miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|57896946|gb|CX662703.1|CX662703 AGAGGCTGCCCGAGATTCCCCGCCGCGGGGTGATAGCCGCGCTCTCACTCGCTCAGCCGCCGCTGTCGAATGGCGGGCCC
CGGTTGGGGCCGGGGGTTGGTGCTGCTCCTCTGGCGGGCCCTGATGGTGGCGTGGAGCTGCTGCTGCTGCTGCTGCTGGG
GGAGTGTGTATCGGGGCAGTCCCGGGGTCAACGTGTACTTGAGCGTGGAGGAAGTGCGGAGGCTGATCGGTCTTGATGCC
GAGTTATATTATGTACGGAATGATGTTGTCAGTTACTTCGCACTCTATTTCAAATTACTTGTACCAGGGGAGACCAACAG
CCTTCACTTTACTTGGCATGCTAAATCCAAGGTTGAATATAAGTTGGGCTTTCAGGTGGACAACCCAGCAGCCATGGACA
TGCCTCAGGCCAATATCTCTGTACAAGGGGAGGTTCCACGCACAGTATCAGTATTCAGAGTGGACCTCTTATGCACAGGA
AAACTTGATTCAGAGGTCACCATGGAAGTGCAGCTTAACCTGACCATTAACTCTTCAAAGAACTTCACAGTCCTGAACTT
CAAAAGGAGGAAAATGTGCTACAAAAAACCTGAACAGGAAGAGAAAACTCCAATTTACCCAGGCAAAAACAGCAGCAAAG
ATGGAAGAACTGCATTTGATGCTGTACACACAGCACCCACTAC




Most similar to sp|P34925|RYK_HUMAN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P34925|RYK_HUMAN Tyrosine-protein kinase RYK OS=Homo sapiens
           GN=RYK PE=1 SV=2
          Length = 604

 Score =  243 bits (621), Expect = 7e-64
 Identities = 123/167 (73%), Positives = 142/167 (85%)
 Frame = +1

Query: 181 PGVNVYLSVEEVRRLIGLDAELYYVRNDVVSYFALYFKLLVPGETNSLHFTWHAKSKVEY 360
           P V++YLS +EVRRLIGLDAELYYVRND++S++AL F LLVP ETN LHFTWHAKSKVEY
Sbjct: 59  PSVSLYLSEDEVRRLIGLDAELYYVRNDLISHYALSFNLLVPSETNFLHFTWHAKSKVEY 118

Query: 361 KLGFQVDNPAAMDMPQANISVQGEVPRTVSVFRVDLLCTGKLDSEVTMEVQLNLTINSSK 540
           KLGFQVDN  AMDMPQ NISVQGEVPRT+SVFRV+L CTGK+DSEV + +QLNLT+NSSK
Sbjct: 119 KLGFQVDNVLAMDMPQVNISVQGEVPRTLSVFRVELSCTGKVDSEVMILMQLNLTVNSSK 178

Query: 541 NFTVLNFKRRKMCYKKPEQEEKTPIYPGKNSSKDGRTAFDAVHTAPT 681
           NFTVLNFKRRKMCYKK E+ + + +   KN+S   RT +D VH APT
Sbjct: 179 NFTVLNFKRRKMCYKKLEEVKTSAL--DKNTS---RTIYDPVHAAPT 220