miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|60558871|gb|DN377651.1|DN377651 TTTTGGTCTGGCTGTTGTGGTGTGCAAAACTCCGTACATTGCTATTTTGCCACACTGCAACACCTTACAGATGTGGAAGA
TGTGAAATTTGTCATCAATTATGACTACCCTAACTCCTCAGAGGATTATATTCATCGAATTGGAAGAACTGCTCGCAGTA
CCAAAACAGGCACAGCATACACTTTCTTTACACCTAATAACATAAAGCAAGTGAGCGACCTTATCTCTGTGCTTCGTGAA
GCTAATCAAGCAATTAATCCAAAGTTGCTTCAGTTGGTCGAAGACAGAGGTTCAGGTCGTTCCAGGGGTAGAGGAGGCAT
GAAGGATGACCGTCGGGACAGATACTCTGCGGGCAAAAGGGGTGGCTTTAATACCTTTAGAGACAGGGAAAATTATGACA
GAGGTTACTCTAGTCTGCTTAAGAGAGATTTTGGGGCAAAAACTCAGAATGGTGTTTACAGTGCTGCAAATTACACCAAT
GGGAGCTTTGGAAGTAATTTTGTGTCTGCTGGTATACAGACCAGTTTTAGGACTGGTAATCCAACAGGGACTTACCAGAA
TGGTTACGATAGCACTCAGCAATATGGAAGTAATGTTCCCAATATGCACAATGGTATGAACCAACAGGCATATGCATATC
CTGCTACTGCAGCTGCGCCTATGATTGGTTATCCAATGCCAACAGGATATTCTC




Most similar to sp|Q4R6M5|DDX5_MACFA

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q8VY97|Y4213_ARATH UPF0480 protein At4g32130 OS=Arabidopsis
           thaliana GN=At4g32130 PE=1 SV=1
          Length = 202

 Score =  138 bits (347), Expect(2) = 5e-34
 Identities = 65/96 (67%), Positives = 81/96 (84%)
 Frame = +3

Query: 3   EVSSLGYLFSPVRVDISARNPGHIQAALTENRRVLNELVLEPLREEQYYEKREPFSIMSL 182
           EV +LGY FSPVRVD+SAR+ G +QA LTE RR L ELVLEPLR EQYYE REPFS+MS+
Sbjct: 89  EVYALGYFFSPVRVDVSARHRGKVQATLTETRRSLTELVLEPLRAEQYYEMREPFSVMSI 148

Query: 183 LKSPMGMMLGFMVIMVFVMPKMMENIDKASSRTNEE 290
           +KSPMG+M+GFMV++VF+MPK+MENID    ++ +E
Sbjct: 149 VKSPMGLMVGFMVVVVFLMPKLMENIDPEEMKSAQE 184



 Score = 26.9 bits (58), Expect(2) = 5e-34
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +1

Query: 262 IKQAQEQMRNSPVPSFSGLL 321
           +K AQEQMR+  VPS + LL
Sbjct: 179 MKSAQEQMRSQGVPSLTSLL 198


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q4R6M5|DDX5_MACFA Probable ATP-dependent RNA helicase DDX5
            OS=Macaca fascicularis GN=DDX5 PE=2 SV=1
          Length = 614

 Score =  353 bits (907), Expect = 5e-97
 Identities = 177/208 (85%), Positives = 177/208 (85%)
 Frame = +1

Query: 70   DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 249
            DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ
Sbjct: 406  DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 465

Query: 250  AINPKLLQLVEXXXXXXXXXXXXXXXXXXXXYSAGKRGGFNTFRDRENYDRGYSSLLKRD 429
            AINPKLLQLVE                    YSAGKRGGFNTFRDRENYDRGYSSLLKRD
Sbjct: 466  AINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTFRDRENYDRGYSSLLKRD 525

Query: 430  FGAKTQNGVYSAANYTNGSFGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQQYGSNVPNMH 609
            FGAKTQNGVYSAANYTNGSFGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQQYGSNVPNMH
Sbjct: 526  FGAKTQNGVYSAANYTNGSFGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQQYGSNVPNMH 585

Query: 610  NGMNQQXXXXXXXXXXXMIGYPMPTGYS 693
            NGMNQQ           MIGYPMPTGYS
Sbjct: 586  NGMNQQAYAYPATAAAPMIGYPMPTGYS 613