miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|61767125|gb|CR851369.2|CR851369 GCCACACTGCAACACCTTACAGATGTGGAAGATGTGAAATTTGTCATCAATTATGACTACCCTAACTCCTCAGAGGATTA
TATTCATCGAATTGGAAGAACTGCTCGCAGTACCAAAACAGGCACAGCATACACTTTCTTTACACCTAATAACATAAAGC
AAGTGAGCGACCTTATCTCTGTGCTTCGGGAAGCTAATCAAGCAATTAATCCTAAGTTGCTTCAGTTGGTCGAAGACAGA
GGTTCAGGTCGTTCCAGGGGTAGAGGAGGCATGAAGGATGACCGGCGGGACAGATACTCTGCGGGCAAGAGGGGTGGATT
TAATACATTTAGAGACAGGGAAAATTATGACCGCGGTTACTCTAGTCTGCTTAAGAGAGATTTTGGGGCAAAAACTCAGA
ATGGTGTTTACAGTGCTGCAAATTACACCAATGGGAGCTTTGGAAGTAATTTTGTGTCTGCTGGTATACAGACCAGTTTT
AGGACTGGTAATCCAACAGGGACTTACCAGAACGGTTATGATAGCACTCAGCAATATGGAAGTAACGTTCCAAATATGCA
CAATGGTATGAACCAACAGGCATATGCATATCCTGCTACTGCAGCTGCGCCTATGATTGGTTATCCGATGCCAACAGGAT
ATTCTCAATAAGACTTTAGAAGTATATGTAAATGTCTGTTTTTCATAATTGCTCTTTATATTGTGTGTTATCAGACAAGA
TAGTTATTTAAGAAACATGGGGAATGCAGAAA




Most similar to sp|Q4R6M5|DDX5_MACFA

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q4R6M5|DDX5_MACFA Probable ATP-dependent RNA helicase DDX5
            OS=Macaca fascicularis GN=DDX5 PE=2 SV=1
          Length = 614

 Score =  355 bits (912), Expect = 1e-97
 Identities = 178/209 (85%), Positives = 178/209 (85%)
 Frame = +1

Query: 22   DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 201
            DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ
Sbjct: 406  DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 465

Query: 202  AINPKLLQLVEXXXXXXXXXXXXXXXXXXXXYSAGKRGGFNTFRDRENYDRGYSSLLKRD 381
            AINPKLLQLVE                    YSAGKRGGFNTFRDRENYDRGYSSLLKRD
Sbjct: 466  AINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTFRDRENYDRGYSSLLKRD 525

Query: 382  FGAKTQNGVYSAANYTNGSFGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQQYGSNVPNMH 561
            FGAKTQNGVYSAANYTNGSFGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQQYGSNVPNMH
Sbjct: 526  FGAKTQNGVYSAANYTNGSFGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQQYGSNVPNMH 585

Query: 562  NGMNQQXXXXXXXXXXXMIGYPMPTGYSQ 648
            NGMNQQ           MIGYPMPTGYSQ
Sbjct: 586  NGMNQQAYAYPATAAAPMIGYPMPTGYSQ 614