miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|62076898|gb|DN711859.1|DN711859 GGCATGCAGCCTGAACCCGCATGAACGTGTAAACATTTGAGTTTCCCAGGCAAGATTCAACTCAAATGGCACCAACAGAT
CAAAAAATGAAAAATGAGAAGTTCACCCCGAAAGATAGCAACTGGAAGAAGTCAAAAAGTAACGTCCAGGGTTTCAAGCA
TAAGAGGAAATGGGTCCCCGAGCAAAACGTATACGAAGGCAGTATTAAAGAAGGTCAGGGGTTTGCTTTAAAGAGGAAGG
AAAAAGTCAAGCATGAGTACAACAAGCTGCTGCGGAAGGAGAGGAAGAAAAACCCCGAGTCCAAAGCTCTGTACAAGGAG
GAGTACCCCGAACACCTCAAGCATCTGTACATGGCCGAGGCCCAGAAACTGAAGAACGAAGCCTGGACCCATCGATTGAA
CAGGACTAAACTGAGAATTAAAGAGCCACACGTGAATGAAGAGAGCGGTGAAAGCACTAATGGTGATGGTGATGATGATG
ATGATGCTGCTGCTGCTCCTACTGAGCCAAATCCAGAAGCTACTGATGGATCCGAGCTGACGGACGCTGGCACTGGGAAT
CCGGAATCCGGTGACGCCGCAGAGAAAGAGTGTCTTCCAATGAGCAACCGCATGAGGAAAAAAGTGCTGAAGAAGACGTC
CTACCAGAAGACAAAAGAGGAATTTGAGGCAATCGCGAAAAAACAGAGAGAGAAGAAAGAGGAGCATCTGANAAAAAGCA
AGCAGAGAGAAGAAGCCATTCAGAACTACAAAAAGAAGAAGATGGAGACCTTTCAGATACTGAAGAAGAAGACCAGGANA
GGACAGCCCAATCTGAACCTCCAAATGGAGTATTTGCTTCANAAGATCACCCAAGGAACTGGGAAATGACTTTTGAGTCA
GAGCTGATATAATTATTGTGAGAAGAGTGGACCGNTACTTCTATTCAACTCTCTGTATTGAGTCTGTTTGCAGGAAAATA
CTCAGGGACATTTCAATTGTGCTTCTCATNGAAAACATAATGGTATTATTTTAGACNNTCGACACAAGATGGCGTCGTAA
GACAGGAGATGCTGATGGAACTCTTTTTATATCACAAAAGTTGGATTTTNCTGGATCCTCTTCATTGGNCGAACCATTGT
CCCAGGTGNATTTAATACCTGNAGGNCAAATTTCCTCCCCTAACCTGGCTTTAACAGAAGAACACCGTTTTAAATTTTTA
GGGAAAAACTTTGGAAACCTTTTTTTGCAAAATCTTGTTAATTGGGAAACCACACCGCGAGACCTTTCTCCAAATACACC
CCGTGTTTAAAAAAAACTTTTAATAAAAAAAAAAAAAAAAAAAAAAA




Most similar to sp|Q5RGP9|TAP26_DANRE

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q5RGP9|TAP26_DANRE Thyroid transcription factor 1-associated
           protein 26 homolog OS=Danio rerio GN=ccdc59 PE=3 SV=1
          Length = 256

 Score =  196 bits (498), Expect = 3e-49
 Identities = 116/263 (44%), Positives = 150/263 (57%), Gaps = 2/263 (0%)
 Frame = +3

Query: 66  MAPTDQKMKNE-KFTPKDSNWKKSKSNVQ-GFKHKRKWVPEQNVYEGSIKEGQGFALKRK 239
           MAP  Q  KN+     K  N K  +  +    K KRKWVPE  V++GS+KEGQGFA KRK
Sbjct: 1   MAPFKQNAKNKGPIRGKQFNNKFQRGGLSHNAKRKRKWVPEDKVFDGSLKEGQGFAFKRK 60

Query: 240 EKVKHEYNKLLRKERKKNPESKALYKEEYPEHLKHLYMAEAQKLKNEAWTHRLNRTKLRI 419
           EKVKHEYNKLLRKERK+  ESK   +EEYPEHLKHLY+AE ++L  E    +  R K R 
Sbjct: 61  EKVKHEYNKLLRKERKRKQESKVQLQEEYPEHLKHLYLAERERLDEEEQEKKKKRCKGRA 120

Query: 420 KEPHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSELTDAGTGNPESGDAAEKECLP 599
            E  +                                +  TD       S + A+ E   
Sbjct: 121 VEEDIEEDDDKLNKDLGSSSSEKNIT-----------NTSTDQTIAPASSNEPAQPESSH 169

Query: 600 MSNRMRKKVLKKTSYQKTKEEFEAIAKKQREKKEEHLXKSKQREEAIQNYKKKKMETFQI 779
            +   ++K    +SYQKTK+E+E I +++  K+EE L    QREEA++ YK+KK+ T+Q+
Sbjct: 170 KTTFFQRK-QNISSYQKTKQEYERIKEERARKREEILKDKAQREEALKKYKEKKIATYQL 228

Query: 780 LKKKTRXGQPNLNLQMEYLLXKI 848
           LK+KT+ GQPNLNLQME LL KI
Sbjct: 229 LKRKTKKGQPNLNLQMELLLQKI 251