miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|63063605|gb|CX294751.1|CX294751 CATAAGGATAGCTTGGTGCAGACCGCAGATAAAGATGAGAGAGAGAGAGAGGAGAGAAATTTCCTCTCTCTTTCTCTCTA
CCCACCGACTCTCTCGTCGCTTCGTCTTTTTTTTTCTCTCTTCTTTATCTGTGGGTGGCATTTTTCTTCGATAAATGGCC
CCCTCATCACTCTGTTAAGATCCGCGGCAAGGAAGGGATTCCACCAAGCCAGCAGAGGTTCCTCTTTACTGGCAAACAAC
TTGACGATGGTCGCACGCTTGCAGACTACAATATCAAGTAGTGAACCTTTCATTTGGTCCTCCGTCTCAAGGGTGGCATG
CAGATTTTTGTGAAAACCCTAACCGGCAAAACATAAACTTGGAGATCGATAGCTCTGACACAATCGACAATGTCAAGGCT
AAGATCCAGGACAAAGGAGCGGATTCCCGCGGACCAGCAGAGTCATTATTATTTTTTTTTTTTTTGAAGAGCTTTGAAGT
TTCTTTTGGCTTACGTGAGGTTTGACCGTGAGAATGTATCTGCATCTGGACGGTATAAGAATGTATCTGTATCTGGACGG
TATAAGAATGTATAAGAATGTATC




Most similar to sp|Q8MKD1|UBB_HORSE

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q8MKD1|UBB_HORSE Polyubiquitin-B OS=Equus caballus GN=UBB PE=2
           SV=3
          Length = 305

 Score =  102 bits (253), Expect = 2e-21
 Identities = 56/89 (62%), Positives = 64/89 (71%), Gaps = 1/89 (1%)
 Frame = +3

Query: 177 KIRGKEGIPPSQQRFLFTGKQLDDGRTLADYNI-K**TFHLVLRLKGGMQIFVKTLTGKT 353
           KI+ KEGIPP QQRF+F GKQL+DGRTL+DYNI K  T HLVLRL+GGMQIFVKTLTGKT
Sbjct: 181 KIQDKEGIPPDQQRFIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 354 *TWRSIALTQSTMSRLRSRTKERIPADQQ 440
            T            + + + KE IP DQQ
Sbjct: 241 ITLEVEPSDTIENVKAKIQDKEGIPPDQQ 269