miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|63104125|gb|DN957089.1|DN957089 CTTTTTGTAGAAGGACAACCTGAGGCGCAGTCCTCCAGTCAAAACCTCTCTAGTAATGAAAGCAGGAAACTGAACATCCG
TGATCTCAGCTGTATTTGGATAAGCTGACTTTAAGCCAACCATGGATCGGGAGGAGGAGGAAGAGGAGCTGACTGCCAAG
GCAGCACCAAAGGACGTGGACGTGTTGACGTCCATGTGCTGCCTGGGTTACCTGTCCAGCATCAGCCTCCTCGTGGCCGT
ATGCGTCGGCATGTACGTCCGCTGGGAGGTGACGGACGAACCCATGATCCTGGTCATCTTCATCCTCGGCCTCTTCGTCC
TGGGAATCGCCAGCATCCTCCATTACTACTTTGCCATGGAGAAGGCCAGCCTCAGCCTCTTCCACCTGTGGTCCGGCTTT
CTGCTCGGACTCCTCTGCTTCCTCAACAGCCCCGCCTTGGACTCGAACGTGACGGAGCTCGTCGCCAACTATCTCCTCGT
CGCCAGCGTGGCGATGAAGGCGGCCTGGGCCGTAACCGAGCGCGTCCGCCGCTCGGTGCGTCACAAACCCGCGCTGCNTA
CGTCGGCCGAGTGGCTCGAGCTGCTGGGATTTGGAATCGCCAGCACGGCCATGCTTCTTCACAAGTCGGCGGCCATCGTC
GGCTT




Most similar to sp|Q1LUD1|T168A_DANRE

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q1LUD1|T168A_DANRE Transmembrane protein 168-A OS=Danio rerio
           GN=tmem168a PE=3 SV=1
          Length = 681

 Score =  179 bits (455), Expect = 1e-44
 Identities = 87/157 (55%), Positives = 115/157 (73%)
 Frame = +2

Query: 170 KDVDVLTSMCCLGYLSSISLLVAVCVGMYVRWEVTDEPMXXXXXXXXXXXXXXASILHYY 349
           K VD+ + + CLGYLSS +LLVAVC+GMYVRWE T EPM              A IL+YY
Sbjct: 9   KSVDMWSFLRCLGYLSSFNLLVAVCLGMYVRWEQTSEPMILVLFILGLFVSAIACILYYY 68

Query: 350 FAMEKASLSLFHLWSGFLLGLLCFLNSPALDSNVTELVANYLLVASVAMKAAWAVTERVR 529
           F+ME ASLSLFHLW GFL GLLCFLNSP+L+  + E V NYLL++SV+++  WA+TER+ 
Sbjct: 69  FSMESASLSLFHLWFGFLQGLLCFLNSPSLEDEIKEQVTNYLLLSSVSIRTLWALTERLC 128

Query: 530 RSVRHKPALXTSAEWLELLGFGIASTAMLLHKSAAIV 640
            + ++KP + TS+E LELLGFG+AS +++  KS A++
Sbjct: 129 ANPKYKPVVITSSELLELLGFGVASISLVFDKSLAMI 165