miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|64690105|gb|BJ833065.1|BJ833065 GCACTCGACAACATTCACACTACAAAGTAAAAATAAACAGCAGCAGATAAACAATGTTTGTCTTTTCTGATTCTCAAAAG
TGAAAATGAATTTGTCAAACTCAAACAACTGCAACTCTTCAGTATGTGATATTTTAATGAAGTGAACAGTGAGAACTTAC
AGCGCCCCCTACAAACACACACGCATGCACGCGCACACACACGCATGCACGCGCACACACACGCACACACACGCAGGCAC
GCACGCACACACACGCACACACACACGACTGCATGTAATACTCAGACAGGACTTAGGGTAGGTGGGTGCGTGTGTGTCAG
TCAGCTGAGTTTGCTGCTGCGCGTGTGAATCCCATCATGCAGTTGGTCTTCAATCATCTTAATGTCATCCAAATCATCTT
TGATGACGTTGATCAGGTGACTCAGACCCTCCTGCTGCTGCTTCAGGTGCTGTTTGATTTCTCGTAGCAGGTCTGCGTCC
ACACGATACCGCTCCTCCGAACGAACGGATCCAAAATGATTCTGCATTCGAATCTGAGACATCAGTTCATTCAGCCGCCC
CTTAAACTGTGTGGGTGCGTTGAGCTCTGACTGGATGGTTTCCAACTGAACTCTCAAATGTTCTTCATCCAGTTGAATGG
CATAACCACTTTTCCTCTGAACTTCCTGTTTGATTAACACCTGCAGGACTCTGTGTGACAGATCCATCAGCTTGCGTTTG
TATTGAGTGATTTTGGCTGCAGTTG




Most similar to sp|Q7Z3B4|NUP54_HUMAN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q7Z3B4|NUP54_HUMAN Nucleoporin p54 OS=Homo sapiens GN=NUP54 PE=1
           SV=2
          Length = 507

 Score =  227 bits (578), Expect = 7e-59
 Identities = 113/140 (80%), Positives = 125/140 (89%)
 Frame = -3

Query: 743 TAAKITQYKRKLMDLSHRVLQVLIKQEVQRKSGYAIQLDEEHLRVQLETIQSELNAPTQF 564
           + AKI QYKRKLMDLSHR LQVLIKQE+QRKSGYAIQ DEE LRVQL+TIQ ELNAPTQF
Sbjct: 368 SVAKIAQYKRKLMDLSHRTLQVLIKQEIQRKSGYAIQADEEQLRVQLDTIQGELNAPTQF 427

Query: 563 KGRLNELMSQIRMQNHFGSVRSEERYRVDADLLREIKQHLKQQQEGLSHLINVIKDDLDD 384
           KGRLNELMSQIRMQNHFG+VRSEERY +DADLLREIKQHLKQQQEGLSHLI++IKDDL+D
Sbjct: 428 KGRLNELMSQIRMQNHFGAVRSEERYYIDADLLREIKQHLKQQQEGLSHLISIIKDDLED 487

Query: 383 IKMIEDQLHDGIHTRSSKLS 324
           IK++E  L++ IH R    S
Sbjct: 488 IKLVEHGLNETIHIRGGVFS 507