miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|67891468|gb|DR146378.1|DR146378 TTCTTTTTTTTTTTTTTTTTTTTTTTTTTCCCATAAGGGGGNNGNGNTNANNNCAGANANCAACAGATTGCACTTTATTA
GGACACACAGAGCGCAGATCTGGCTAATCTTTGGACACGCAAAGCGTTGCACACTTTTCCAACTTAAATAGAAAGATTTG
CTAAAAGGGAGTATGCCAATCCGGTGGTTTGGACACAAGACACAAAGGCGCTAATGAAGTACACAATCAAGGGAATTCGT
GGGATGAATGGATGTATGCTGGTTCCTAGGCGTTGGCAAAGTCAATGCCCTTCTGGAGGTTCTTCTTCAGCTCAGGGATG
GCGGCCTCCAGCAGCTTCTTCTCGTAGTCATTGAGCTTAGGCAGACCCAGGTTCTCTTTCAAACCTGACTTGCCCAGCAC
CAAAGGGGTGGAAAAAAAGGTGGCCTCCGTGATGGTCGACTGCACATAGGAGCACTCGATAACGTTCTTCTCGCCGTTGA
GGCCCTTCAGCAGGGATCCAGCAAAGCGGGCACCGGCATAGGCCATCGAGAGGGTGGCTGAACCGGCTCCAGCCTTGGCT
TTGACCACCTCAGTGCCGGCCTCCTGGATGCGCACCGTTAGCTTCTCGATGACGTCCTGGCTGCCCTTGAACAGAGGCTG
GCTCTGGGACAGCACGGGCAGAATGGTCACACCCGAGTGGCCGCCGATCACGGGGATCTGCACTGTCTGTGGATCAACAT
TCACGGCATGGCCGATGAAGGCGCGGGCACACACCACATCCAGGGTGGAAACACCGAACAGACGATTGGGATCGTAGACA
CTAACCTTCTTAAGGATCTCGGCAGCAATTGGCACGCAGGTGTTCACGGGAATCCGGAAGATGGCTATCAGGGCCCTTGG
GGCAATTTCTTGGCAATGGAACCTGGCAAATGCCCCTGAAAGAAGCCCGGCGGTCCCCGGTTGAAACAAAATCATCCCCG
GGGCCATGCCCCGGGTTTGCCGGGGAAACCTCCCACGGGGGAATGGAAAACCCCAAATTCTGAAAGCCCCTTTCAGGGGA
ATTCCGCCCCCAGGCGGGGAACCGCGCCCCCCCATGGAAAATCCCAAACAAGTCCTTGTGCTCCTTGTGGGGGTACAATG
GTGGGGAAAAAGATAGTGGGGGGGGCCCCCCACCGGGGGGGTGTCGCACAAAAGTTGTCTAAACAGAAAAAAA




Most similar to sp|P04636|MDHM_RAT

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P04636|MDHM_RAT Malate dehydrogenase, mitochondrial OS=Rattus
          Length = 338

 Score =  241 bits (614), Expect = 1e-62
 Identities = 118/206 (57%), Positives = 154/206 (74%)
 Frame = -2

Query: 895 CQEIAPRALIAIFRIPVNTCVPIAAEILKKVSVYDPNRLFGVSTLDVVCARAFIGHAVNV 716
           C +  P A+I I   PVN+ +PI AE+ KK  VY+PN++FGV+TLD+V A  F+     +
Sbjct: 128 CAQHCPEAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFVAELKGL 187

Query: 715 DPQTVQIPVIGGHSGVTILPVLSQSQPLFKGSQDVIEKLTVRIQEAGTEVVKAKAGAGSA 536
           DP  V +PVIGGH+G TI+P++SQ  P     QD +  LT RIQEAGTEVVKAKAGAGSA
Sbjct: 188 DPARVNVPVIGGHAGKTIIPLISQCTPKVDFPQDQLATLTGRIQEAGTEVVKAKAGAGSA 247

Query: 535 TLSMAYAGARFAGSLLKGLNGEKNVIECSYVQSTITEATFFSTPLVLGKSGLKENLGLPK 356
           TLSMAYAGARF  SL+  +NG++ VIECS+VQS  TE T+FSTPL+LGK GL++NLG+ K
Sbjct: 248 TLSMAYAGARFVFSLVDAMNGKEGVIECSFVQSKETECTYFSTPLLLGKKGLEKNLGIGK 307

Query: 355 LNDYEKKLLEAAIPELKKNLQKGIDF 278
           +  +E+K++  AIPELK +++KG DF
Sbjct: 308 ITPFEEKMIAEAIPELKASIKKGEDF 333