miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|68106742|gb|CJ414487.1|CJ414487 ATGTTTCTTAGAGCGTAATGAGCGCGTCGACCTAATAAAAATAACAACAAATCATCAAAATGGATTCGACGTATCCAAGT
TTAGCGAGAGCTGGTTTGGATCAGAATTATCTACATGCTAATTCGACAACTCATGAGTTTTTATTTGGAGCACTAGCGGA
ATTGGTTGATAATGCGAGAGATGCATCTGCCACAAAAATCAATGTTTTTACTGAGAATGATGAACGTTGTAGAGGAGGCT
TTACGTTGAATTTTTTAGATGATGGCGAAGGAATGGATGCCTCTGATGTTTCGAATATTGTTCAGTTTGGTAGATCTTCT
AAACGAGCAGTAAATGACAACATGATTGGTCAATATGGAAATGGATTAAAATCGGGGTCTATGAGAATTGGCTCTGATTT
TATTCTGTTTACAAAACGTGGGCTAACTATGACCTGCCTGATGCTCTCGCGATCATTTTATGAACGGGAGAGAATTCAGA
CCATTATTGTTCCAATGCCATCATGGGAGAGTGACACGAAGCGACCGATACTAAATGAAATTGGCGGAAAGGGTCGCTAT
GTTACAGAGATTGGTTTAATTACAAAATATTCTCCATTCAAAAGCGAAAAGGATGTAATGCGACAGTTTGATTTAATCAA
AGATAAAACAGGTACTTTGATTGTGGTTTACAATATGAAACTGCTTGATTCTGGTCTTCCTGAACTTGATATTAAAAGCG
ATCCTACTGATATACGAATGTCAGAAATGGACAATGAAGACNAAAGTAACTGGCC




Most similar to sp|Q9Y6X9|MORC2_HUMAN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9SJT1|SAE2_ARATH SUMO-activating enzyme subunit 2
           OS=Arabidopsis thaliana GN=SAE2 PE=1 SV=1
          Length = 700

 Score =  112 bits (279), Expect(2) = 2e-30
 Identities = 54/64 (84%), Positives = 59/64 (92%)
 Frame = +3

Query: 222 LSGFRDIHIIDLDTIEVSNLNRQFLFRQSHVGQSKAHVARDAVLKFRPNINITSYHANVT 401
           LSGF DIHIID+DTIEVSNLNRQFLFR+SHVGQSKA VARDAVL+FRPNINI SYHANV 
Sbjct: 33  LSGFEDIHIIDMDTIEVSNLNRQFLFRRSHVGQSKAKVARDAVLRFRPNINIRSYHANVK 92

Query: 402 DAQF 413
           + +F
Sbjct: 93  NPEF 96



 Score = 40.0 bits (92), Expect(2) = 2e-30
 Identities = 18/23 (78%), Positives = 20/23 (86%)
 Frame = +2

Query: 152 VQAAKVXMVGAGGIGCELLNTLA 220
           ++ AKV MVGAGGIGCELL TLA
Sbjct: 10  IKGAKVLMVGAGGIGCELLKTLA 32


>sp|Q54L40|SAE2_DICDI SUMO-activating enzyme subunit 2
           OS=Dictyostelium discoideum GN=uba2 PE=3 SV=1
          Length = 661

 Score = 85.1 bits (209), Expect(2) = 7e-21
 Identities = 35/64 (54%), Positives = 54/64 (84%)
 Frame = +3

Query: 222 LSGFRDIHIIDLDTIEVSNLNRQFLFRQSHVGQSKAHVARDAVLKFRPNINITSYHANVT 401
           L+GF++I IIDLDTI++SNLNRQFLFR+ H+G SKA +A+++V+K+   +NIT++H +V 
Sbjct: 43  LTGFKNIDIIDLDTIDISNLNRQFLFRKQHIGMSKAKIAKESVMKYNEQVNITAHHGDVK 102

Query: 402 DAQF 413
            ++F
Sbjct: 103 SSEF 106



 Score = 34.7 bits (78), Expect(2) = 7e-21
 Identities = 14/22 (63%), Positives = 17/22 (77%)
 Frame = +2

Query: 152 VQAAKVXMVGAGGIGCELLNTL 217
           +Q  K+ +VGAGGIGCELL  L
Sbjct: 20  IQTCKILVVGAGGIGCELLKNL 41


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9Y6X9|MORC2_HUMAN MORC family CW-type zinc finger protein 2
           OS=Homo sapiens GN=MORC2 PE=1 SV=2
          Length = 1032

 Score =  271 bits (693), Expect = 4e-72
 Identities = 133/231 (57%), Positives = 172/231 (74%)
 Frame = +3

Query: 66  STYPSLARAGLDQNYLHANSTTHEFLFGALAELVDNARDASATKINVFTENDERCRGGFT 245
           + Y SL RA L   YLH NSTTHEFLFGALAELVDNARDA AT+I+++ E  E  RGGF 
Sbjct: 4   TNYSSLNRAQLTFEYLHTNSTTHEFLFGALAELVDNARDADATRIDIYAERREDLRGGFM 63

Query: 246 LNFLDDGEGMDASDVSNIVQFGRSSKRAVNDNMIGQYGNGLKSGSMRIGSDFILFTKRGL 425
           L FLDDG GMD SD ++++QFG+S+KR      IGQYGNGLKSGSMRIG DFILFTK+  
Sbjct: 64  LCFLDDGAGMDPSDAASVIQFGKSAKRTPESTQIGQYGNGLKSGSMRIGKDFILFTKKED 123

Query: 426 TMTCLMLSRSFYERERIQTIIVPMPSWESDTKRPILNEIGGKGRYVTEIGLITKYSPFKS 605
           TMTCL LSR+F+E E I  +IVP+P+W + T+ P+ + +    ++  E  LI KYSPF++
Sbjct: 124 TMTCLFLSRTFHEEEGIDEVIVPLPTWNARTREPVTDNV---EKFAIETELIYKYSPFRT 180

Query: 606 EKDVMRQFDLIKDKTGTLIVVYNMKLLDSGLPELDIKSDPTDIRMSEMDNE 758
           E++VM QF  I   +GTL++++N+KL+D+G PELDI S+P DI+M+E   E
Sbjct: 181 EEEVMTQFMKIPGDSGTLVIIFNLKLMDNGEPELDIISNPRDIQMAETSPE 231