miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|71437918|gb|DR818968.1|DR818968 CGAGAGGAGACTTTGCTCGCTTTTGGTGGGCATCCGCGCGGAGCTGACCACAGACGGTGTAGAGACTAGATAGATCGGAA
GGGGATCTAGGCATAGAGAGCGAGGAGGATGACCGGCGTTGTTGCAGGCGCCGGAGGGGGCAACAAGGCGGCGGGCGCCA
CGCTGCGGCTGCACCACTACCTTGTGATGGCCGGGGTGGCGGCGGCGTTCGTCCTCGCCTGCCTCCGGTACGCGCCGGAC
CCCGCGGGGTACGGCTTCCTGGCCGTGGCGCCGCGGCCGGTGGAGGCCGATGCTGGTGCCCGGCGGGACACCACTCCTCC
ACCGCGCCCGTCGTCGTCGTCGTCGTCGGTGGTCATCTTCAACTTCGGTGACTCCAACTCCGACACGGGCGGCATGGCGG
CGGTCAACGGGATGAACATTAACCTGCCCGAGGGACGCACCTTCTTCCGCCGCCCCACCGGAAGGCTCTCCGATGGCCGC
CTCGTCATCGACTTCATCTGTGAGAGCCTGCACACGCCTTTCCTGAGCCCATACCTCAAGGCGCTGGGCGCGGATTTCAG
CAACGGCGTGAACTTCGCCATCGGCGGCTCGACGGCGACGCCGGGGGGCTCTCCATTCTCGCTGGACGTGCAGCTCCATC
AGTGGCTCTACTTCAGGGCCAGGTCCATGGAGATGATCAACCTANGACAGAGGCCTCCCATCGATCG




Most similar to sp|O80522|GDL2_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9SAK5|APL_ARATH Myb family transcription factor APL
           OS=Arabidopsis thaliana GN=APL PE=2 SV=2
          Length = 358

 Score =  115 bits (289), Expect(2) = 2e-27
 Identities = 62/120 (51%), Positives = 76/120 (63%), Gaps = 1/120 (0%)
 Frame = +3

Query: 432 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKY-L 608
           K RLRWT ELHERFVDAVAQLGGPD+ATPK ++RVMGV+GLT+YH+KSHLQK+RL K   
Sbjct: 34  KPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPH 93

Query: 609 PXXXXXXXXXXXXXXXXXXXXXXXXXAGVQINEALKLQMEVQKRLHEQLEVQDSYSLELK 788
                                     +G+      ++QMEVQ+RLHEQLEVQ    L ++
Sbjct: 94  KEYGDHSTKEGSRASAMDIQRNVASSSGMMSRNMNEMQMEVQRRLHEQLEVQRHLQLRIE 153



 Score = 28.5 bits (62), Expect(2) = 2e-27
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = +2

Query: 764 RQLQLRIEAQGKYLK 808
           R LQLRIEAQGKY++
Sbjct: 146 RHLQLRIEAQGKYMQ 160


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|O80522|GDL2_ARATH GDSL esterase/lipase At1g09390 OS=Arabidopsis
           thaliana GN=At1g09390 PE=2 SV=1
          Length = 370

 Score =  139 bits (349), Expect = 2e-32
 Identities = 67/112 (59%), Positives = 90/112 (80%), Gaps = 1/112 (0%)
 Frame = +1

Query: 352 VIFNFGDSNSDTGGMAAVNGMNINLPEGRTFFRRPTGRLSDGRLVIDFICESLHTPFLSP 531
           VIFNFGDSNSDTGG+ A  G +I LP GR+FF+R TGRLSDGRLVIDF+C+SL+T  L+P
Sbjct: 37  VIFNFGDSNSDTGGLVAGLGYSIGLPNGRSFFQRSTGRLSDGRLVIDFLCQSLNTSLLNP 96

Query: 532 YLKAL-GADFSNGVNFAIGGSTATPGGSPFSLDVQLHQWLYFRARSMEMINL 684
           YL +L G+ F NG NFAI GS+  P   PF+L++QL Q+L+F++R++E+ ++
Sbjct: 97  YLDSLVGSKFQNGANFAIVGSSTLPRYVPFALNIQLMQFLHFKSRALELASI 148