miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|7581392|gb|AW698806.1|AW698806 ACGATACAAATACATCTTCTCCACTCTCTGCCCATCTTCCACATAACAATCTGCCTGTTCACTTTCACTGAAGATCTCCA
CATTCAACCTCGGCATCTTCTTGGCTAATGTCTTGCATGCTTCTACAGTCACCTCGCACGACGACATCCAAAGGGATCGC
ATTGTTTCATACTTCCCTATGTCTGTTAGAAGCGCCGTGTCTCCGAATGGACAGTCTCTAATCTCAAGCTTGCGAATCCT
TTTGCATCCGTTCAATACATAGAGCATTCCCTTGTCACTCTCGCCAGCAAATGCAATAGACAACATTTCAAGCTGCTCAG
CGTACCTGCCC




Most similar to sp|Q9LPW7|AFB3_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9LPW7|AFB3_ARATH Protein AUXIN SIGNALING F-BOX 3 OS=Arabidopsis
           thaliana GN=AFB3 PE=1 SV=1
          Length = 577

 Score =  157 bits (396), Expect = 3e-38
 Identities = 76/113 (67%), Positives = 93/113 (82%), Gaps = 3/113 (2%)
 Frame = -2

Query: 330 GRYAEQLEMLSIAFAGESDKGMLYVLNGCKRIRKLEIRDCPFGDTALLTDIGKYETMRSL 151
           G YAEQLEMLSIAFAG++DKGMLYVLNGCK++RKLEIRD PFG+ ALL D+G+YETMRSL
Sbjct: 449 GMYAEQLEMLSIAFAGDTDKGMLYVLNGCKKMRKLEIRDSPFGNAALLADVGRYETMRSL 508

Query: 150 WMSSCEVTVEACKTLAKKMPRLNVEIFSESE---QADCYVEDGQRVEKMYLYR 1
           WMSSCEVT+  CK LA+  PRLNVEI +E+E         ++ ++V+K+YLYR
Sbjct: 509 WMSSCEVTLGGCKRLAQNSPRLNVEIINENENNGMEQNEEDEREKVDKLYLYR 561