miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|77284751|gb|CJ432578.1|CJ432578 GCAGATTCCTCGAGCACTGTGTGATATCCATTGTGCTGGCGCGGATTCTTTATCACTGATAAGTTGGTGGACATATTATG
TTTATCAGTGATAAAGTGTCAAGCATGACAAAGTTGCAGCCGAATACAGTGATCCGTGCCGCCCTGGACCTGTTGAACGA
GGTCGGCGTAGACGGTCTGACGACACGCAAACTGGCGGAACGGTTGGGGGTTCAGCAGCCGGCGCTTTACTGGCACTTCA
GGAACAAGCGGGCGCTGCTCGACGCACTGGCCGAAGCCATGCTGGCGGAGAATCATACGCATTCGGTGCCGAGAGCCGAC
GACGACTGGCGCTCATTTCTGATCGGGAATGCCCGCAGCTTCAGGCAGGCGCTGCTCGCCTACCGCCAGCACAATGGCAC
CATGTGCTCGAGCTGCAGGTCGCGGCCGCTAGACTAGTCTAGAGAAAAAACCTCCCACACCTTCCCCTGAACCTGATACA
TAAAATGAATGCAATTGTTGTTGTTAACTTGTTTATTGCAGCTTATAATGGTTACAAATAAAGCAATAGCATTACAAATT
TCACAAATAAAGCATTTGTTTCACTGCATTTTAATTGGGGGTTGTCCAAACTTCATCATGTATTTTATCATGTCTTGGAT
CCCCGGGTACCGAGCTTGAATTAATTTCTTTTTCCGTTTCTTGCTCACTTACTTGTTTGGCTTGGTCGTTTGGTTCCGCG
AACGGGATTAGCTTACTTCAAGGCGGTATTCAGGTATTCACAGAAATATGGGGATTACGCATGAAAAACATTGTGAACAA
ATGGCCTCATAAGGGCCTGAAACCTTAATAGGCCCGTGTGTTTG




Most similar to sp|P03038|TETR1_ECOLX

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P03038|TETR1_ECOLX Tetracycline repressor protein class A from
           transposon 1721 OS=Escherichia coli GN=tetR PE=2 SV=2
          Length = 216

 Score =  163 bits (413), Expect = 1e-39
 Identities = 84/103 (81%), Positives = 84/103 (81%), Gaps = 4/103 (3%)
 Frame = +3

Query: 105 MTKLQPNTVIRAALDLLNEVGVDGLTTRKLAERLGVQQPALYWHFRNKRXXXXXXXXXXX 284
           MTKLQPNTVIRAALDLLNEVGVDGLTTRKLAERLGVQQPALYWHFRNKR           
Sbjct: 1   MTKLQPNTVIRAALDLLNEVGVDGLTTRKLAERLGVQQPALYWHFRNKRALLDALAEAML 60

Query: 285 XXNHTHSVPRADDDWRSFLIGNARSFRQALLAYRQ----HNGT 401
             NHTHSVPRADDDWRSFLIGNARSFRQALLAYR     H GT
Sbjct: 61  AENHTHSVPRADDDWRSFLIGNARSFRQALLAYRDGARIHAGT 103