miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|81493575|gb|AM141755.1|AM141755 CCCGGGCCTTATGGTCTGGGAGTTCAGCTGTCACCGATTGGCTTTTTATCAATTCCTGGTGGATCCTGCTTACTTTTATT
ATGCTCCTTATAGTGTGCGCCTTCATCGTTGCCTTTGTGTTGCTGCTTTACATGATATCGCCGCTCATCAGTCCGAAGCC
TCTGAAATTAAACGGGGCCCACGTCGTGGTGACCGGAGGCTCAGGTGGAATTGGGAAATGCATTGCAATCGAATGCTACA
GACAAGGAGCCTTTATCACTCTGGTAGCTCGTGATGAGGATAAGTTACTCCGAGCAAAGAAAGAGGTGGAAAAATTTGCC
ATCAATGACAAACAGGTGGTGCTCTGTGTATCGGTCGACATCTCCAGTGATTACACTCAAGTGGAAAATGTGATAAAGCA
GGCTCAGGAGAAGCTTGGACCGGTGGACATGCTGGTGAACTGCGCTGGAACAGCCGTCGCTGGGAAGTTCGAGGAGATGG
AAGTGGAACGTTTCAAAGAGTTAATGGAGCTGAATTACCTGGGCAGCGTCTACCCAACACGAGCCGTCATAACCACCATG
AAGGAGCGAAGAATGGGTCGAATCGTGTTCGTGTCGTCCCAGGCGGGCCAGATCGGTCTTTTCGGATACACGGCCTACTC
GCCTTCAAAGTTCGCTCTGCGTGGATTGGCAGAATCATTGCAAATGGAGATGAAGCCGTACAACATCTATGTGACCGTTG
CATTCCCCCCTGACACGGACACGCCCCTGCTGGCTGAAGAA




Most similar to sp|Q6GV12|KDSR_MOUSE

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q6GV12|KDSR_MOUSE 3-ketodihydrosphingosine reductase OS=Mus
           musculus GN=Kdsr PE=2 SV=1
          Length = 332

 Score =  381 bits (978), Expect = e-105
 Identities = 186/227 (81%), Positives = 213/227 (93%)
 Frame = +3

Query: 81  MLLIVCAFIVAFVLLLYMISPLISPKPLKLNGAHVVVTGGSGGIGKCIAIECYRQGAFIT 260
           MLL+  A +VAFVLLLYM+SPLISPKPL L GAHVVVTGGS GIGKCIAIECY+QGAFIT
Sbjct: 1   MLLLAAAGLVAFVLLLYMVSPLISPKPLALPGAHVVVTGGSSGIGKCIAIECYKQGAFIT 60

Query: 261 LVARDEDKLLRAKKEVEKFAINDKQVVLCVSVDISSDYTQVENVIKQAQEKLGPVDMLVN 440
           LVAR+EDKLL+AKK++EK +INDKQVVLC+SVD+S DY QVENVIKQAQEKLGPVDMLVN
Sbjct: 61  LVARNEDKLLQAKKDIEKHSINDKQVVLCISVDVSQDYNQVENVIKQAQEKLGPVDMLVN 120

Query: 441 CAGTAVAGKFEEMEVERFKELMELNYLGSVYPTRAVITTMKERRMGRIVFVSSQAGQIGL 620
           CAGT+++GKFEE+EV  F++LM +NYLGSVYP+RAVITTMKERR+GRIVFVSSQAGQ+GL
Sbjct: 121 CAGTSMSGKFEELEVSSFEKLMSINYLGSVYPSRAVITTMKERRVGRIVFVSSQAGQLGL 180

Query: 621 FGYTAYSPSKFALRGLAESLQMEMKPYNIYVTVAFPPDTDTPLLAEE 761
           FG+TAYS SKFA+RGLAE+LQME+KPYN+YVTVA+PPDTDTP LAEE
Sbjct: 181 FGFTAYSSSKFAIRGLAEALQMEVKPYNVYVTVAYPPDTDTPGLAEE 227