miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|82804657|gb|DV870428.1|DV870428 TACATTTTTGTTGAAAGGTCCTCAAAATGAGAGCACACGAGGAGGTTGCTGTGAACTTTTAAGTGGCCCTACTGCGCAGA
AGCATTCAGATGTCACTTGATGATCTGTAAGGGGACTTGCTAATTTGGGACTGTTAGGAAATACACACGTCCTTTGGACA
CGCTCCATCATTGGGTGGGTAATAAGGTATACAGATGACGTGTGCTTTTTGTTTTTTTTTCTTCCCCCCCTTCAACCTCA
ATGGTATTCCTACAGGGAATGGATAACCATTTTAACTGTATTTTTTGCAGCCCATACCTTCTTGGGAATACAATTGTCTA
ACTTTTTATTTTTGGTCTGGCTGTTGTGGTGTGCAAAACCCTGTACATTGCTATTTTGCCACACTGCAACACCTTACAGA
TGTGGAAGATGTGAAATTTGTCATCAATTATGACTACCCTAACTCCTCAGAGGATTATATTCATCGAATTGGAAGAACTG
CTCGCAGTACCAAAACAGGCACAGCATACACTTTCTTTACACCTAATAACATAAAGCAAGTGAGCGACCTTATCTCTGTG
CTTCGGGAAGCTAATCAAGCAATTAATCCTAAGTTGCTTCAGTTGGTCGAAGACAGAGGTTCAGGTCGTTCCAGGGGTAG
AGGAGGCATGAAGGATGACCGGCGGGACAGATACTTCTGCGGGCAAAAGGGGTGGATTTAATACTTTTAGAGACAGGGAA
ATTTATGACCGAGGTTACTCTAGTCTGGCTT




Most similar to sp|Q5R4I9|DDX5_PONAB

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q5R4I9|DDX5_PONAB Probable ATP-dependent RNA helicase DDX5
           OS=Pongo abelii GN=DDX5 PE=2 SV=1
          Length = 614

 Score =  144 bits (362), Expect(2) = 1e-42
 Identities = 71/71 (100%), Positives = 71/71 (100%)
 Frame = +3

Query: 399 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 578
           DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ
Sbjct: 406 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 465

Query: 579 AINPKLLQLVE 611
           AINPKLLQLVE
Sbjct: 466 AINPKLLQLVE 476



 Score = 50.8 bits (120), Expect(2) = 1e-42
 Identities = 23/24 (95%), Positives = 23/24 (95%)
 Frame = +1

Query: 676 SAGKRGGFNTFRDREIYDRGYSSL 747
           SAGKRGGFNTFRDRE YDRGYSSL
Sbjct: 498 SAGKRGGFNTFRDRENYDRGYSSL 521


>sp|A5A6J2|DDX5_PANTR Probable ATP-dependent RNA helicase DDX5
           OS=Pan troglodytes GN=DDX5 PE=2 SV=1
          Length = 614

 Score =  144 bits (362), Expect(2) = 1e-42
 Identities = 71/71 (100%), Positives = 71/71 (100%)
 Frame = +3

Query: 399 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 578
           DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ
Sbjct: 406 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 465

Query: 579 AINPKLLQLVE 611
           AINPKLLQLVE
Sbjct: 466 AINPKLLQLVE 476



 Score = 50.8 bits (120), Expect(2) = 1e-42
 Identities = 23/24 (95%), Positives = 23/24 (95%)
 Frame = +1

Query: 676 SAGKRGGFNTFRDREIYDRGYSSL 747
           SAGKRGGFNTFRDRE YDRGYSSL
Sbjct: 498 SAGKRGGFNTFRDRENYDRGYSSL 521


>sp|Q4R6M5|DDX5_MACFA Probable ATP-dependent RNA helicase DDX5
           OS=Macaca fascicularis GN=DDX5 PE=2 SV=1
          Length = 614

 Score =  144 bits (362), Expect(2) = 1e-42
 Identities = 71/71 (100%), Positives = 71/71 (100%)
 Frame = +3

Query: 399 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 578
           DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ
Sbjct: 406 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 465

Query: 579 AINPKLLQLVE 611
           AINPKLLQLVE
Sbjct: 466 AINPKLLQLVE 476



 Score = 50.8 bits (120), Expect(2) = 1e-42
 Identities = 23/24 (95%), Positives = 23/24 (95%)
 Frame = +1

Query: 676 SAGKRGGFNTFRDREIYDRGYSSL 747
           SAGKRGGFNTFRDRE YDRGYSSL
Sbjct: 498 SAGKRGGFNTFRDRENYDRGYSSL 521


>sp|P17844|DDX5_HUMAN Probable ATP-dependent RNA helicase DDX5
           OS=Homo sapiens GN=DDX5 PE=1 SV=1
          Length = 614

 Score =  144 bits (362), Expect(2) = 1e-42
 Identities = 71/71 (100%), Positives = 71/71 (100%)
 Frame = +3

Query: 399 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 578
           DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ
Sbjct: 406 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 465

Query: 579 AINPKLLQLVE 611
           AINPKLLQLVE
Sbjct: 466 AINPKLLQLVE 476



 Score = 50.8 bits (120), Expect(2) = 1e-42
 Identities = 23/24 (95%), Positives = 23/24 (95%)
 Frame = +1

Query: 676 SAGKRGGFNTFRDREIYDRGYSSL 747
           SAGKRGGFNTFRDRE YDRGYSSL
Sbjct: 498 SAGKRGGFNTFRDRENYDRGYSSL 521


>sp|Q61656|DDX5_MOUSE Probable ATP-dependent RNA helicase DDX5
           OS=Mus musculus GN=Ddx5 PE=1 SV=1
          Length = 614

 Score =  144 bits (362), Expect(2) = 3e-42
 Identities = 71/71 (100%), Positives = 71/71 (100%)
 Frame = +3

Query: 399 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 578
           DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ
Sbjct: 406 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 465

Query: 579 AINPKLLQLVE 611
           AINPKLLQLVE
Sbjct: 466 AINPKLLQLVE 476



 Score = 49.7 bits (117), Expect(2) = 3e-42
 Identities = 22/24 (91%), Positives = 23/24 (95%)
 Frame = +1

Query: 676 SAGKRGGFNTFRDREIYDRGYSSL 747
           SAGKRGGFNTFRDRE YDRGYS+L
Sbjct: 498 SAGKRGGFNTFRDRENYDRGYSNL 521


>sp|Q501J6|DDX17_MOUSE Probable ATP-dependent RNA helicase DDX17
           OS=Mus musculus GN=Ddx17 PE=2 SV=1
          Length = 650

 Score =  125 bits (315), Expect = 2e-28
 Identities = 59/71 (83%), Positives = 64/71 (90%)
 Frame = +3

Query: 399 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 578
           DVEDVKFVINYDYPNSSEDY+HRIGRTARST  GTAYTFFTP N+KQ  +LI VL EANQ
Sbjct: 404 DVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQ 463

Query: 579 AINPKLLQLVE 611
           AINPKL+QLV+
Sbjct: 464 AINPKLMQLVD 474