miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|84096480|gb|DR120941.1|DR120941 CTGCAGGATTCGGCACGAGGGGCGAGCACGGCGTCGGAGATCATTGCCTTCATGGTCTCCATCTCCGGCTGGGTGCTGGT
GTCCTCCACGCTGCCCACCGACTACTGGAAGGTGTCCACCATCGACGGCACGGTCATCACCACCGCCACCTATTGGGCCA
ACCTGTGGAAGGCATGCGTTACCGACTCCACGGGCGTCTCCAATTGCAAGGATTTCCCCTCCATGCTGGCGCTGGACGGT
TATATCCAGGCATGTCGAGGACTTATGATTGCCGCTGTCAGCCTGGGCTTTTTTGGTTCCATATTTGCCCTGTTTGGAAT
GAAATGTACCAAGGTCGGAGGCTCAGATAAAGCCAAAGCTAAAATGGCTTGTTTGGCTGGGATTGTATTCATACTGTCAG
GGCTGTGCTCAATGACCGGGTGTTCCCTGTATGCAAACAAAATCACAACGGAATTCTTTGATCCCCACTACGTGGAGCAG
AAGTATGAATTAGGAGCTGCTCTGTTTATTGGATGGGCAGGAGCCTCACTCTGCATAATTGGTGGTGTCATATTTTGCTT
TTCAATATCTGACAACAACAAAAAACCCAGAATGGGATACACATACAATGGGGCCACATCTGTCATGTCTTCTCGGACAA
AGTATCACGGAGGAGGAGGAGGAGATCTGAAAACCACAAACCCTTCCAAACAGTTTGACAAAAATGCTTACGTCTAAGAA
GAGCACTGCCGCAAGCTGTGTCTTGAGCTTGTTAGAAACGTGAACTGTTCACAGAATGATCCCCTCAAGGCCCTCCTGTA
ATTAACACTCGAAAAAACTATTTTTCAAATGCGAATGTGAAGAATTTGTTGATTGCATGGATGTAAATGTTCTTACATAG
TTACATACTAATCACTTTCTGTTGTGGCTTTCTATAACAAATAAACAAGCTATTTACAGGATTTGTATATATTTTATACA
TCCGCAGAACCTGTAATGTACGCAGTACCAACGATTACAGACGTTGTCATCATAGAGCCTTCTTAAAAAAAAAAAAAAAA
AACTCGAGGATCCGGGTACCGGGCCCATAAGNNNNNNNNNNNNNNNNNNNNNNGTCGACCATGGTTTTTTCC




Most similar to sp|Q5E9L0|CLD10_BOVIN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q5E9L0|CLD10_BOVIN Claudin-10 OS=Bos taurus GN=CLDN10 PE=2 SV=1
          Length = 231

 Score =  445 bits (1145), Expect = e-124
 Identities = 220/231 (95%), Positives = 223/231 (96%)
 Frame = +1

Query: 22  ASTASEIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYWANLWKACVTDSTGVS 201
           ASTASEIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYWANLWK CVTDSTGVS
Sbjct: 2   ASTASEIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYWANLWKTCVTDSTGVS 61

Query: 202 NCKDFPSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKMACLAG 381
           NCKDFPSMLALDGYIQACRGLMIAAVSLGFFGSIFAL GMKCTKVGGSDKAKAK+ACLAG
Sbjct: 62  NCKDFPSMLALDGYIQACRGLMIAAVSLGFFGSIFALIGMKCTKVGGSDKAKAKIACLAG 121

Query: 382 IVFILSGLCSMTGCSLYANKITTEFFDPHYVEQKYELGAALFIGWAGASLCIIGGVIFCF 561
           IVFILSGLCSMTGCSLYANKITTEFFDP +VEQKYELGAALFIGWAGASLC+IGGVIFCF
Sbjct: 122 IVFILSGLCSMTGCSLYANKITTEFFDPLFVEQKYELGAALFIGWAGASLCLIGGVIFCF 181

Query: 562 SISDNNKKPRMGYTYNGATSVMSSRTKYHGGGGGDLKTTNPSKQFDKNAYV 714
           SISDNNK PRMGYTYNGATSVMSSRTKYH G  GDLKT NPSKQFDKNAYV
Sbjct: 182 SISDNNKAPRMGYTYNGATSVMSSRTKYH-GREGDLKTPNPSKQFDKNAYV 231