miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|85732872|gb|BP471315.1|BP471315 AGACTTGGCCCAGTGGGGCCAGATGGGCTGAAGGGGGACAGGGGTGACCCAGGTCCTGATGGTGAACATGGTGAAAAGGG
TCAGGAAGGACTGAAAGGAGAGGAGGGGCTCCCTGGGCCCCCAGGCATCACTGGTGTCCGGGGTCGTGAAGGGAAGCCTG
GCAGTCAGGGTGAGAAGGGCCAGAGGGGAGCTAAGGGTGCCAAGGGCTACCAAGGACAGCTGGGAGAGATGGGCATCCCT
GGAGACCCTGGCCCCCCTGGCACCCCAGGTCCTAAAGGGTCCCGGGGCACCCTAGGACCAATGGGTGCTCCAGGACGGAT
GGGAGCCCAAGGAGAACCAGGATTGGCTGGTTATAATGGGCATAAAGGCATCACGGGACCTCTCGGGCCTCCCGGGCCCA
AAGGCGAGAAGGGGGAACAGGGCGAGGATGGCAAGACTGAGGGGGCCCCCGGGCCACCAGGAGAGCGGGGTCCTGTGGGT
GATCGAGGAGACCGTGGGG




Most similar to sp|Q80ZF0|CORA1_RAT

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q80ZF0|CORA1_RAT Collagen alpha-1(XXVII) chain OS=Rattus
          Length = 1855

 Score =  148 bits (374), Expect = 1e-35
 Identities = 76/120 (63%), Positives = 76/120 (63%)
 Frame = +1

Query: 4    LGPVGPDGLKGDRGDPGPDXXXXXXXXXXXXXXXXXXXXXXITGVRGREGKPGSQGEKGQ 183
            LGPVGPDGLKGDRGDPGPD                      ITGVRGREGKPGSQGEKGQ
Sbjct: 1188 LGPVGPDGLKGDRGDPGPDGEHGEKGQEGLKGEEGLPGPPGITGVRGREGKPGSQGEKGQ 1247

Query: 184  RGAKGAKGYQGQLXXXXXXXXXXXXXXXXXXXXXXTLGPMGAPGRMGAQGEPGLAGYNGH 363
            RGAKGAKGYQGQL                      TLGPMGAPGRMGAQGEPGLAGYNGH
Sbjct: 1248 RGAKGAKGYQGQLGEMGIPGDPGPPGTPGPKGSRGTLGPMGAPGRMGAQGEPGLAGYNGH 1307