miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|86354471|gb|DY160296.1|DY160296 GGTGGCTTCACAGCTGCAATGACAGCAGGGTGGACCTCCACCGCCTTACGTTTTGGAGCCAATTTGGGTGATGAGACAAC
TTTAACCACAGATGGCTTCACATTCACTTTAGGTTTAGCTTTACTTCGTTTTTCCAAGGGCTGTGTTGCACATTTCACAT
TCAATATTGAGTCCCCAATCCCTGAGGTTTCTACCTTTGCCTTCTGGGATGACTTTGAAGGAAGCCGCTTAGTCAGGTGC
CGTGTGATGCCTAGCATGGTGGTGAGCACTGGTTTCTCAGCTAACTCGGTACTGTAAGAGAGTAAATCTCCCCGAAGGGG
TGTCAAAATTGATTTTTCCTTCTGTGAGGTTCCCTTCTCTGGCAATTTGGGCACATACTTTTCTCTCACTGTCTTACATC
TCTTGTCTTGAATTTTAGTGATGCCAACTGTTGTGGTCTCATCTGAAGCCTTTTTAGCTTCTGTTCTAGAAACACTGCTC
TGAGAAGCAACATCACTTTCTTCTTGAAGTTTCTTCTCTTCTTTTATACCTGTTTTCTTAGTGATCCGGAGAAGCCGTTT
TGCCGCTGGCA




Most similar to sp|O75152|ZC11A_HUMAN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|O75152|ZC11A_HUMAN Zinc finger CCCH domain-containing protein 11A
            OS=Homo sapiens GN=ZC3H11A PE=1 SV=3
          Length = 810

 Score =  186 bits (471), Expect = 1e-46
 Identities = 109/189 (57%), Positives = 129/189 (68%)
 Frame = -3

Query: 569  PAAKRLLRXXXXXXXXXXXKLQEESDVASQSSVSRTEAKKASDETTTVGITKIQDKRCKT 390
            P A+RLLR            LQE ++V SQSS+ RTEAK+AS ETT V ITKIQ KRC+T
Sbjct: 503  PGARRLLRITKRTGMKEEKNLQEGNEVDSQSSI-RTEAKEASGETTGVDITKIQVKRCET 561

Query: 389  VREKYVPKLPEKGTSQKEKSILTPLRGDLLSYSTELAEKPVLTTMLGITRHLTKRLPSKS 210
            +REK++ K  E+     EKS+LTPLRGD+ S +T++AEKPVLT + GITRHLTKRLP+KS
Sbjct: 562  MREKHMQKQQER-----EKSVLTPLRGDVASCNTQVAEKPVLTAVPGITRHLTKRLPTKS 616

Query: 209  SQKAKVETSGIGDSILNVKCATQPLEKRXXXXXXXXXXXXXXXXXXXXXXXXKRKAVEVH 30
            SQK +VETSGIGDS+LNVKCA Q LEKR                        KRKAVE+H
Sbjct: 617  SQKVEVETSGIGDSLLNVKCAAQTLEKRGKAKPKVNVKPSVVKVVSSPKLAPKRKAVEMH 676

Query: 29   PAVIAAVKP 3
             AVIAAVKP
Sbjct: 677  AAVIAAVKP 685