miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|87269965|gb|DY456840.1|DY456840 GGGATAACCATTTTAACTGTATTTTTTGCAGCCCATACCTTCTTGGGAATACAATTGTCTAACTTTTTATTTTTGGTCTG
GCTGTTGTGGTGTGCAAAACCCTGTACATTGCTATTTTGCCACACTGCAACACCTTACAGATGTGGAAGATGTGAAATTT
GTCATCAATTATGACTACCCTAACTCCTCAGAGGATTATATTCATCGAATTGGAAGAACTGCTCGCAGTACCAAAACAGG
CACAGCATACACTTTCTTTACACCTAATAACATAAAGCAAGTGAGCGACCTTATCTCTGTGCTTCGGGAAGCTAATCAAG
CGATTAATCCTAAGTTGCTTCAGTTGGTCGAAGACAGAGGTTCAGGTCGTTCCAGGGGTAGAGGAGGCATGAAGGATGAC
CGGCGGGACAGATACTCTGCGGGCAAGAGGGGTGGATTTAATACATTTAGAGACAGGGAAAATTATGACCGCGGTTACTC
TAGTCTGCTTAAGAGAGATTTTGGGGCAAAAACTCAGAATGGTGTTTACAGTGCTGCAAATTACACCAATGGGAGCTTTG
GAAGTAATTTTGTGTCTGCTGGTATACAGACCAGTTTTAGGACTGGTAATCCAACAGGGACTTACCAGAACGGTTATGAT
AGCACTCAGCAATATG




Most similar to sp|Q4R6M5|DDX5_MACFA

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9SR32|U161_ARATH UPF0161 protein At3g09310 OS=Arabidopsis
           thaliana GN=At3g09310 PE=2 SV=2
          Length = 170

 Score =  119 bits (297), Expect(2) = 2e-28
 Identities = 49/59 (83%), Positives = 55/59 (93%)
 Frame = +3

Query: 510 EISPLMPKSCRYVPTCSEYSMIAYKKYGVAKGSILTAWRICRCNPLGGSGFDPPRWFDE 686
           EISP++P+SCRYVPTCSEYSM AYKKYGV KG++LT WR+CRCNPLGGSGFDPPRWF E
Sbjct: 88  EISPVLPRSCRYVPTCSEYSMEAYKKYGVLKGTVLTTWRLCRCNPLGGSGFDPPRWFGE 146



 Score = 28.1 bits (61), Expect(2) = 2e-28
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +2

Query: 329 DTNEEEDFGVKVALSMLSFYKSQ 397
           D  E E  GVK AL+ML FYK +
Sbjct: 66  DGEELESVGVKAALAMLRFYKRE 88


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q4R6M5|DDX5_MACFA Probable ATP-dependent RNA helicase DDX5
           OS=Macaca fascicularis GN=DDX5 PE=2 SV=1
          Length = 614

 Score =  303 bits (776), Expect = 6e-82
 Identities = 152/172 (88%), Positives = 152/172 (88%)
 Frame = +2

Query: 140 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 319
           DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ
Sbjct: 406 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 465

Query: 320 AINPKLLQLVEXXXXXXXXXXXXXXXXXXXXYSAGKRGGFNTFRDRENYDRGYSSLLKRD 499
           AINPKLLQLVE                    YSAGKRGGFNTFRDRENYDRGYSSLLKRD
Sbjct: 466 AINPKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTFRDRENYDRGYSSLLKRD 525

Query: 500 FGAKTQNGVYSAANYTNGSFGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQQY 655
           FGAKTQNGVYSAANYTNGSFGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQQY
Sbjct: 526 FGAKTQNGVYSAANYTNGSFGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQQY 577