miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|89135139|gb|DY580684.1|DY580684 GCACGAGGAGGAGACAACGCTGTGGTGTGATTCTTGCCTGTTTCGTTCACGGAATTTGAGGAGGATTGTTAAAACAAATT
GTATTTTGTTGATCGCACAATGCATTGGTTACAATTTTCCTTAATCGCAGCTAATTGCGTTGTCTTGTGCAATGCAGGAG
TTATTTCCTACATAGAGGGATACTTCTCTCACGATGACCCTGATGTTAAACGAAATGTGACTCAGCTAATAGCAAGCAGA
GGATATGATTACGAAGAACATCACGTTACAACGGAAGACGGCTTCATTCTTGGATTGCAGAGGATTCCGCGGGGGAGAGG
AGAAAAGATAAGTTCTGAAAACAAACCTGTTGTTTTTCTTCAACATGGCATTCTAGAAGACTCCACCAACTGGGTCTTAG
ATTCCGCGAGCAAGAGCTTTGCTTACATTCTTGCAGACAGTGGGTTTGACGTTTGGCTTGGGAACATCCGGGGAAATGAC
TACTCAAGTGCGTCACGTGAAGTACAAGCCCACTCAATCAATATTTTGGAATTGGAGCTGGCAAGAAATGGCTGACTACG
ACCTCCCGGCAATGATAAACTACGCTCTACAAGTCAGTGGAGAGAAGCAGTTGTTTTATGTTGGC




Most similar to sp|Q5VXJ0|LIPK_HUMAN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q3E902|RS212_ARATH 40S ribosomal protein S21-2 OS=Arabidopsis
           thaliana GN=RPS21C PE=3 SV=1
          Length = 85

 Score =  104 bits (260), Expect(2) = 3e-33
 Identities = 50/51 (98%), Positives = 50/51 (98%)
 Frame = +2

Query: 86  MQKEEGQVTELYIPRKCSATNRLITSKDHASVQLNIGHLDANGLYTGQFTT 238
           MQ EEGQVTELYIPRKCSATNRLITSKDHASVQLNIGHLDANGLYTGQFTT
Sbjct: 1   MQNEEGQVTELYIPRKCSATNRLITSKDHASVQLNIGHLDANGLYTGQFTT 51



 Score = 56.6 bits (135), Expect(2) = 3e-33
 Identities = 26/26 (100%), Positives = 26/26 (100%)
 Frame = +1

Query: 253 GFVRAQGDADSGVDRLWQKKKVEAKQ 330
           GFVRAQGDADSGVDRLWQKKKVEAKQ
Sbjct: 56  GFVRAQGDADSGVDRLWQKKKVEAKQ 81


>sp|Q9M337|RS211_ARATH 40S ribosomal protein S21-1 OS=Arabidopsis
           thaliana GN=RPS21B PE=2 SV=1
          Length = 82

 Score = 99.4 bits (246), Expect(2) = 1e-31
 Identities = 46/51 (90%), Positives = 49/51 (96%)
 Frame = +2

Query: 86  MQKEEGQVTELYIPRKCSATNRLITSKDHASVQLNIGHLDANGLYTGQFTT 238
           M+ + GQVTELYIPRKCSATNR+ITSKDHASVQLNIGHLDANGLYTGQFTT
Sbjct: 1   MENDAGQVTELYIPRKCSATNRMITSKDHASVQLNIGHLDANGLYTGQFTT 51



 Score = 56.6 bits (135), Expect(2) = 1e-31
 Identities = 26/26 (100%), Positives = 26/26 (100%)
 Frame = +1

Query: 253 GFVRAQGDADSGVDRLWQKKKVEAKQ 330
           GFVRAQGDADSGVDRLWQKKKVEAKQ
Sbjct: 56  GFVRAQGDADSGVDRLWQKKKVEAKQ 81


>sp|Q41852|RS21_MAIZE 40S ribosomal protein S21 OS=Zea mays GN=RPS21
           PE=3 SV=1
          Length = 81

 Score = 91.3 bits (225), Expect(2) = 3e-27
 Identities = 40/51 (78%), Positives = 46/51 (90%)
 Frame = +2

Query: 86  MQKEEGQVTELYIPRKCSATNRLITSKDHASVQLNIGHLDANGLYTGQFTT 238
           MQ EEG+  +LY+PRKCSATNR+IT+KDHASVQ+NIGHLDANGLY G FTT
Sbjct: 1   MQNEEGKTVDLYVPRKCSATNRIITAKDHASVQINIGHLDANGLYDGHFTT 51



 Score = 50.1 bits (118), Expect(2) = 3e-27
 Identities = 22/27 (81%), Positives = 24/27 (88%)
 Frame = +1

Query: 250 AGFVRAQGDADSGVDRLWQKKKVEAKQ 330
           +GFVRAQGDADS +DRLWQKKK E KQ
Sbjct: 55  SGFVRAQGDADSSLDRLWQKKKAEIKQ 81


>sp|P35687|RS21_ORYSJ 40S ribosomal protein S21 OS=Oryza sativa
           subsp. japonica GN=RPS21 PE=3 SV=1
          Length = 82

 Score = 90.5 bits (223), Expect(2) = 1e-26
 Identities = 39/51 (76%), Positives = 47/51 (92%)
 Frame = +2

Query: 86  MQKEEGQVTELYIPRKCSATNRLITSKDHASVQLNIGHLDANGLYTGQFTT 238
           MQ EEGQ+ +LY+PRKCSATNR+IT+KDHASVQ+NIGH+D NGLY G+FTT
Sbjct: 1   MQNEEGQMVDLYVPRKCSATNRIITAKDHASVQINIGHVDENGLYDGRFTT 51



 Score = 48.9 bits (115), Expect(2) = 1e-26
 Identities = 20/27 (74%), Positives = 24/27 (88%)
 Frame = +1

Query: 250 AGFVRAQGDADSGVDRLWQKKKVEAKQ 330
           +GF+RAQGDADS +DRLWQK+K E KQ
Sbjct: 55  SGFIRAQGDADSALDRLWQKRKAEVKQ 81


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q5VXJ0|LIPK_HUMAN Lipase member K OS=Homo sapiens GN=LIPK PE=2
           SV=2
          Length = 399

 Score =  117 bits (294), Expect = 5e-26
 Identities = 55/124 (44%), Positives = 85/124 (68%)
 Frame = +1

Query: 115 FSLIAANCVVLCNAGVISYIEGYFSHDDPDVKRNVTQLIASRGYDYEEHHVTTEDGFILG 294
           + L+AA C +L    +  Y +   ++ +P+   N++Q+I+  GY YEE+ VTT+DG+ILG
Sbjct: 2   WQLLAAACWMLLLGSMYGY-DKKGNNANPEANMNISQIISYWGYPYEEYDVTTKDGYILG 60

Query: 295 LQRIPRGRGEKISSENKPVVFLQHGILEDSTNWVLDSASKSFAYILADSGFDVWLGNIRG 474
           + RIP GRG    +  KP V+LQHG++  ++NW+ +  + S A++LADSG+DVWLGN RG
Sbjct: 61  IYRIPHGRGCPGRTAPKPAVYLQHGLIASASNWICNLPNNSLAFLLADSGYDVWLGNSRG 120

Query: 475 NDYS 486
           N +S
Sbjct: 121 NTWS 124