miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|89240808|gb|DY614690.1|DY614690 GCCTCCTCAATGATGGTCTCGGCGGAAGCTGAGCAGATGGGGGTCGGAGGTGGTACCTTCCAGCCGTATCTGGACTCTCT
GCGCCAGGAGCTGCAGCAAAGAGACCCAGCGATGCTTTCCGTGGTCGTGGCGCTGCTCGTCGTGCTGCTGACGCTGGTAT
GCTGGAAACTCATTCGGAGCAGAAAGAGCAGTCGAAGGGCTGTACTTCTGGTTGGCCTTTGTGACTCGGGGAAGACGCTC
CTTTTTGTCAGGCTGTTAACGGGACTTTACAGATTTTCATAGCTTAAGACAGTATCATTCTTGGATCAGCCAAATTCATT
GTGACTGAACAACTCAAAGTCACTTTTATGGAATACTTGATTATGAGATGTCTTCCTCTGCTCCCTTAATTTTATAAAAC
TAAGTAATGAACAAATAGCAGAAAGATTCTCTGTAGGGTTTTATATGTGTGCAAACTCAGCAGTGTTAAAGAATATCTGT
GTTTTTGTAATGAAATTCTTGGCTTCTCAAATTTTTGGGTTTTACAAATAATACATTTTTGGTAAATAATGTGGCCAGCA
TGACTTAGAGCAGGCAAAGGTCATGTAAGAGCAGGATGAGACTAACCTCATGTCAGGATTCTGATTTGAAAGCCTCTCTA
CTGCTAATATTTAGTCTTATTTTACCTTTGCTAGCAGANNTAGCTTAGGGAAACAGAAGTAGGAAAAAAAAACAGTGAAN
NGAAATTTNANNC




Most similar to sp|Q9Y5M8|SRPRB_HUMAN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9Y5M8|SRPRB_HUMAN Signal recognition particle receptor subunit
           beta OS=Homo sapiens GN=SRPRB PE=1 SV=3
          Length = 271

 Score =  107 bits (267), Expect = 8e-23
 Identities = 57/90 (63%), Positives = 65/90 (72%), Gaps = 3/90 (3%)
 Frame = +1

Query: 13  MVSAEAEQMGVGGG---TFQPYLDSLRQELQQRDPAMXXXXXXXXXXXXXXXCWKLIRSR 183
           M SA++ ++  GGG   TFQPYLD+LRQELQQ DP +                WKLIRSR
Sbjct: 1   MASADSRRVADGGGAGGTFQPYLDTLRQELQQTDPTLLSVVVAVLAVLLTLVFWKLIRSR 60

Query: 184 KSSRRAVLLVGLCDSGKTLLFVRLLTGLYR 273
           +SS+RAVLLVGLCDSGKTLLFVRLLTGLYR
Sbjct: 61  RSSQRAVLLVGLCDSGKTLLFVRLLTGLYR 90