miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|89973724|gb|DY760133.1|DY760133 ACAGTTTCGGTCGGAATCCCGGGATCGGGCGGCCTTCCTGGGCTGCCTGACTGACGTCCGCCAGGCGCTGGCAGCGCCTC
GAGTGGCTGGGAAGGAGGGCCCTGGCCTGGCCGAGTTGCTGGCCAATGTGGCCAGCTCCATCCTGAGCCACATTAAGGCT
TCTCTGGCAGCAGTGCACCTTTTCACCGCCAAAGAGGTGTCCTTCTCCAACAAGCCCTACTTCCGGGGGGAGTTCTGCAG
TCAGGGTGTCCGTGAGGGCCTCATCGTGGGCTTCATCCGCTCTATGTGCCAGACGGCTCAGAGCTTCTGCGACAGCCCTG
GGGAGAAAGGGGGTGCCACACCACCTGCCCTGCTCCTGCTGCTCTCCCGCCTCTGCCTGGACTATGAGACGGCTACCATC
TCCTACATCCTCACTCTCACTGATGAACAGTTTCTGGTGCAGGATCAGTTCCCAGTGACGCCCGTGAGCACACTGTGTGC
AGAGGCCAGGGAAACTGCACGGCGGCTGCTGACCCACTACGTGAAGGTGCAGGGCCTGGTCATATCACAGATGCTGCGCA
AGAGCGTGGAGACTCGGGACTGGCTCAGCACTCTGGAGCCGCGTGGGGCTTCTGTACGAAGAGGGTGTTCGCAAGGCCCA
GAGCAGCGACTCCAGCAAGAGGACCTTCTCCGTGTACAGCAGCTCTCGGCAGCAGGGCCGCTACGCCCCAGCTATACCCC
CAGTGCCCGATGGACACCACCCTCTGAGCATATCCAGAGCTATCTCTGACGTATGATGTGTCAGCCTGTGAGTCACAGAT




Most similar to sp|Q9UID3|FFR_HUMAN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9UID3|FFR_HUMAN Protein fat-free homolog OS=Homo sapiens GN=FFR
            PE=1 SV=2
          Length = 782

 Score =  357 bits (916), Expect = 5e-98
 Identities = 195/256 (76%), Positives = 203/256 (79%), Gaps = 22/256 (8%)
 Frame = +2

Query: 26   RAAFLGCLTDVRQALAAPRVAGKEGPGLAELLANVASSILSHIKASLAAVHLFTAKEVSF 205
            RAAFLGCLTDVRQALAAPRVAGKEGPGLAELLANVASSILSHIKASLAAVHLFTAKEVSF
Sbjct: 415  RAAFLGCLTDVRQALAAPRVAGKEGPGLAELLANVASSILSHIKASLAAVHLFTAKEVSF 474

Query: 206  SNKPYFRGEFCSQGVREGLIVGFIRSMCQTAQSFCDSPGEKGGATPPAXXXXXXXXXXDY 385
            SNKPYFRGEFCSQGVREGLIVGF+ SMCQTAQSFCDSPGEKGGATPPA          DY
Sbjct: 475  SNKPYFRGEFCSQGVREGLIVGFVHSMCQTAQSFCDSPGEKGGATPPALLLLLSRLCLDY 534

Query: 386  ETATISYILTLTDEQFLVQDQFPVTPVSTLCAEARETARRLLTHYVKVQGLVISQMLRKS 565
            ETATISYILTLTDEQFLVQDQFPVTPVSTLCAEARETARRLLTHYVKVQGLVISQMLRKS
Sbjct: 535  ETATISYILTLTDEQFLVQDQFPVTPVSTLCAEARETARRLLTHYVKVQGLVISQMLRKS 594

Query: 566  VETRDWLSTLEPRGASVRRGCSQGPEQR---------LQQEDLLRVQQLSAA-------- 694
            VETRDWLSTLEPR  +VR    +  E           L +E + + Q   ++        
Sbjct: 595  VETRDWLSTLEPR--NVRAVMKRVVEDTTAIDVQVGLLYEEGVRKAQSSDSSKRTFSVYS 652

Query: 695  -----GPLRPSYTPSA 727
                 G   PSYTPSA
Sbjct: 653  SSRQQGRYAPSYTPSA 668