miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|91739851|gb|EB376506.1|EB376506 CTTTTTTTTTTTTTTTTTGATATTCTCTTAAGAGTTTATTATAAACCAGTTTCATAGGCCACAAGGAAATAAAAGGACTA
TGTACAGCCTTACAGGACACAGGCAGGGAGCTGAGGAGGGCCAAGATGAGTCTAGGGCCTTGGTGGGCGCATTCCCGGGG
GAGGGGGCCCTGTAAGGGAAACCAGACAATCCGGTGAGACTCCGCGAACAACAGCATAACAAACAAACAGGTCTGTGGTA
GCGTGGCCCTGGGGGATCGGGCCCACGCCTCTGTGGATCTACTTCCATAACTCTGTGGCAAGGGTCAAAGGAGGTGGGCC
CATCATGCCTGGAGGAGGTGCACCTCGGCCCATGGGTGGGGGAGGACCCGCACGGCCAGGTGGGTACTGGGTGGGGGCCC
CTGCAATACTAGCTGTGGCAGCTGCTGCAGCGGCTGCAACAGTGCCTCTTCCTTGAGGGGTCATCACCTGTTGGGATGGC
CCACCAACCCCACGGACTGGGCCAGCAAGACCTGCAGGAGCCTGAGGCATGGGAACACCAGCTGGGATTCCTCTGCCAGC
GGCCCTGCCAATCCCTGGGCCCCCAGCAGCTCCAGCAAGTGGTACTCGGGCAATGCCAGTATCTTTGGGGGGAGGACCCT
CTACCGTCATGGAGACCAGGTTCTCCCCGCGCAGCAGCACCAGGCCGAGGACTCGCTTCTCTTCCCTTTCTGCCTGTTTG
GAGTTCTTCGGCTTGATCTTCCTGAACTCATCACAGTC




Most similar to sp|P17136|RSMB_RAT

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P17136|RSMB_RAT Small nuclear ribonucleoprotein-associated
           SV=1
          Length = 214

 Score =  174 bits (441), Expect = 6e-43
 Identities = 93/125 (74%), Positives = 93/125 (74%)
 Frame = -1

Query: 758 DCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLXXXXXX 579
           DCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPL      
Sbjct: 27  DCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGG 86

Query: 578 XXXXXXXXXXXXXGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVXXXXXXXXXXXXX 399
                        GVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTV             
Sbjct: 87  PGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAG 146

Query: 398 APTQY 384
           APTQY
Sbjct: 147 APTQY 151