miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|93029050|gb|CJ525969.1|CJ525969 CAAATCTTAAGAAATACTCCCTCTGTCCCATAATATAAGAGCGTTTTTTACACTAGTGTAGTGTAAAAAACACTCTTATA
TTATGGGACGGAGGGAGTACTTATGAGGNACATTTGTCNNGATTGNGCNCAAGGGTTAAGGGNNATAGACGCAGTAAAAT
AGCATCATCGAATGTAAAGAGATTGGACCGACAGATCAGCGAAAGGACAAGACTAGCACAGCCTGTTTCCAGCAAGTGGA
ATCAATGCCTTAATCCAACTCCATCTCATTATCCCGCGCTGTGCCTCTGCATGACCAGATCTTTATAGTTCTATCATGTG
AAACAGTCACAATCTGTTGTCCATCTCCACTAATATCCAGACTAGTAACCTTTGACTCATGGCCTGCCAAGCATTTAATT
GGTTTGTAATCCCGAGTTGACCATAGCGCTGCTTTAGTGTCATAGGAAGATGTCGCTAAATAATAACCCTCCTGGGGTTC
AAATTTCACATGCGAGATGAGACTCTTATGTGCCGGTATAGAATATAACATTTGTCTGGTCCTCAAATCCCATATTCGAC
AGAAATTGTCTTCGCTTGCAGTTGCAACTAGATGACCATTANGGGAGAAGCCGACTCCTA




Most similar to sp|O22212|PRP4_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|O22212|PRP4_ARATH U4/U6 small nuclear ribonucleoprotein
           PRP4-like protein OS=Arabidopsis thaliana GN=EMB2776
           PE=2 SV=1
          Length = 554

 Score =  152 bits (385), Expect = 1e-36
 Identities = 71/117 (60%), Positives = 88/117 (75%)
 Frame = -3

Query: 615 VGFSXNGHLVATASEDNFCRIWDLRTRQMLYSIPAHKSLISHVKFEPQEGYYLATSSYDT 436
           V FS NG+ +A+  EDN CRIWDLR R+ LY IPAH +L+S VK+EPQEGY+LAT+SYD 
Sbjct: 429 VNFSPNGYHLASGGEDNQCRIWDLRMRKSLYIIPAHANLVSQVKYEPQEGYFLATASYDM 488

Query: 435 KAALWSTRDYKPIKCLAGHESKVTSLDISGDGQQIVTVSHDRTIKIWSCRGTARDNE 265
           K  +WS RD+  +K LAGHESKV SLDI+ D   I TVSHDRTIK+W+  G   ++E
Sbjct: 489 KVNIWSGRDFSLVKSLAGHESKVASLDITADSSCIATVSHDRTIKLWTSSGNDDEDE 545