miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|9303246|gb|BE361689.1|BE361689 CAGCACCAGGGACAGGGACACGGCAATAATAATAATAAGCAGCAGCAGTGGTGCCCACCGCCGGCGGCGCTGGCGCACGA
GGAGCAGCTCCGGTTCCGGTGCGCGGTGTGCGGGAAGGCCTTCGCGTCGTACCAGGCGCTCGGCGGCCACAAGTCCAGCC
ACCGCAAGCCGCCCACGCCGGAGCAGTACGCCGCCGCCGCGGCGGCGCAGCAGCAGGAGGCGTTTTCCGCGCCCGACTCC
GAGGAGACGACGACGACGACGACGTCGTCGTCGGGAGGGACGACTTCTACCGGTGGGCCGCACCGGTGCACCATCTGCCG
GAAGGGGTTCGCCACGGGCCAGGCGCTCGGCGGCCACAAGCGCTGCCACTACTGGGACGGCACGTCGTCGGTGTCCGTCT
CCATGTCGGCGTCGGCGTCCGCTACGGGGTCGTCGTCGGCCGTCACCGTCAGGAACTTTGACCTCAACCTGATGCCTGTG
CCGGAGAACGCCGGCATGAAGAGATGGGTCGAGGAGGAGGAGGTGCAGAGTCCACTGCCCATCAAGAAGCGCAGGATCTT
GGATTAGTTTAACTCTCACTGCCTACTTTTGAGATCGTGTGTCCATAAATCTCGGATTCTCAGTTCATGTAAAA




Most similar to sp|Q42430|ZFP1_WHEAT

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q42430|ZFP1_WHEAT Zinc finger protein 1 OS=Triticum aestivum
           PE=2 SV=1
          Length = 261

 Score =  103 bits (256), Expect = 1e-21
 Identities = 67/183 (36%), Positives = 81/183 (44%), Gaps = 14/183 (7%)
 Frame = +1

Query: 55  PPPAALAHEEQLRFRCAVCGKAFASYQALGGHKSSHR-KPPTPXXXXXXXXXXXXXXFSA 231
           P P + A      F+C+VCGK+F+SYQALGGHK+SHR K P+P               +A
Sbjct: 77  PQPESFAAPVPAEFKCSVCGKSFSSYQALGGHKTSHRVKQPSPPSDAAAAPLVALPAVAA 136

Query: 232 PDSEEXXXXXXXXXXXXXXXXXPHRCTICRKGFATGQALGGHKRCHYWDGXXXXXXXXXX 411
                                  HRC+IC+K F TGQALGGHKR HY  G          
Sbjct: 137 ILPSAEPATSSTAASSDGATNRVHRCSICQKEFPTGQALGGHKRKHYDGGVGAAASSTEL 196

Query: 412 XXXXXXXXXXXXXRN-------FDLNLMPVPE------NAGMKRWVEEEEVQSPLPIKKR 552
                         N       FDLN+  VPE        G   W ++EEVQSPL  KK 
Sbjct: 197 LAAAAAESEVGSTGNGSSAARAFDLNIPAVPEFVWRPCAKGKMMWEDDEEVQSPLAFKKP 256

Query: 553 RIL 561
           R+L
Sbjct: 257 RLL 259