miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|93249658|gb|CJ607957.1|CJ607957 ATTCAGTTGTAAGCCTCTGTCACCATTGAGTACACAGTGACTACTGACAAGTACTCCTTCTGTAAACTAATATAAGAGTC
TAAACGCTCTTATATTAGTTTACAAGGCAGTACTCGAGTAGTACAAGTGGAGTAGCACTATGGCTATTCTACTTGACATT
GAAAAACTTAATTCGAGCACTACATGAACCTCTTTACAAGGGATTTTCTGACGAGTCAGAGGTCAGGACCGAGAACAACG
TACGGTATCAGTCGATCGTATGATTTGTGACAATATAAATGCAAAATTTACATGAAGAACGCCGGCAGTTACTCCACAGT
CCACATCCCCAAAGGGAGAGGGAAAGGGATGAACCGTATCTATCATAATTAGACCATGCTGAAGAGATTAGCCGTGGAGA
TGAGCGAGCTTGCGGCGAGCGCTATGAAGGCAAGGAAGGACAGCCACACCGAGCTGGTGATCTTCCTGTTGAAGGCGTCC
TGACTGAACCTCGACACCCACAGATCGTTGCGCGACGCGGCAGCCGACGACGCGGACATGAGGAGATACGCCAGGACCTG
ATCAAGGAACAGGCTGAAGTAGTAGCTTGACATGCTCCTGTAAATAAACCTCGCCGCGACCAGACGGCGGATCTCACCCA
GCGATTGCGCGATTGAGTAGGCGCAGACGATCACGTTCACCGCCAGGGCGTACCTGTACTGATCGTAGCGATCGAAGTGA
TCGCCGTCCCAGCCGG




Most similar to sp|C5XEK4|U4974_SORBI

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|C5XEK4|U4974_SORBI UPF0497 membrane protein Sb03g029220
           OS=Sorghum bicolor GN=Sb03g029220 PE=2 SV=1
          Length = 461

 Score =  152 bits (384), Expect = 2e-36
 Identities = 79/121 (65%), Positives = 89/121 (73%)
 Frame = -3

Query: 734 GWDGDHFDRYDQYRYALAVNVIVCAYSIAQSLGEIRRLVAARFIYRSMSSYYFSLFLDQV 555
           GW GD++  + QYRYA+AVNVIVCAYSIAQS GEIRRL++ RFI+RSMSSYY SLFLDQ 
Sbjct: 341 GWAGDYYAHHLQYRYAVAVNVIVCAYSIAQSFGEIRRLISPRFIFRSMSSYYCSLFLDQA 400

Query: 554 LAYLLMXXXXXXXSRNDLWVSRFSQDAFNRKITSSVWXXXXXXXXXXXXXXXSTANLFSM 375
           LAYLLM       SRNDLWVSRF  DAFNRKITS++W               STANLFSM
Sbjct: 401 LAYLLMSASSAAASRNDLWVSRFGTDAFNRKITSALWLSFIAFLMLALNALISTANLFSM 460

Query: 374 V 372
           +
Sbjct: 461 L 461