miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41894_hvu-MIR444b:mirbase
Length = 121
Score = 240 bits (121), Expect = 2e-64
Identities = 121/121 (100%)
Strand = Plus / Minus
Query: 2 ggagtcagcaagcttgagacagcaactgcacaacttgcaagaaagtcacgattatgaaga 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggagtcagcaagcttgagacagcaactgcacaacttgcaagaaagtcacgattatgaaga 62
Query: 62 cccatagattttgtaacttccttgaaagtaatgcagttgttgcctcatgcttggtgccac 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cccatagattttgtaacttccttgaaagtaatgcagttgttgcctcatgcttggtgccac 2
Query: 122 c 122
|
Sbjct: 1 c 1
>42089_osa-MIR444d:mirbase
Length = 143
Score = 99.6 bits (50), Expect = 5e-22
Identities = 104/121 (85%), Gaps = 2/121 (1%)
Strand = Plus / Minus
Query: 2 ggagtcagcaagcttgagacagcaactgcacaacttgcaagaaagtcacgattatgaaga 61
|||| ||||||||||||| |||||||||||||||||||||||||| ||| | || | |
Sbjct: 132 ggaggcagcaagcttgaggcagcaactgcacaacttgcaagaaagccacaagta--atca 75
Query: 62 cccatagattttgtaacttccttgaaagtaatgcagttgttgcctcatgcttggtgccac 121
| | |||||||| ||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 74 tctaatgattttgtgcctttcttgcaagtaatgcagttgttgcctcatgcttggtgccac 15
Query: 122 c 122
|
Sbjct: 14 c 14
>42088_osa-MIR444d:mirbase
Length = 143
Score = 99.6 bits (50), Expect = 5e-22
Identities = 104/121 (85%), Gaps = 2/121 (1%)
Strand = Plus / Minus
Query: 2 ggagtcagcaagcttgagacagcaactgcacaacttgcaagaaagtcacgattatgaaga 61
|||| ||||||||||||| |||||||||||||||||||||||||| ||| | || | |
Sbjct: 132 ggaggcagcaagcttgaggcagcaactgcacaacttgcaagaaagccacaagta--atca 75
Query: 62 cccatagattttgtaacttccttgaaagtaatgcagttgttgcctcatgcttggtgccac 121
| | |||||||| ||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 74 tctaatgattttgtgcctttcttgcaagtaatgcagttgttgcctcatgcttggtgccac 15
Query: 122 c 122
|
Sbjct: 14 c 14
>42087_osa-MIR444d:mirbase
Length = 143
Score = 99.6 bits (50), Expect = 5e-22
Identities = 104/121 (85%), Gaps = 2/121 (1%)
Strand = Plus / Minus
Query: 2 ggagtcagcaagcttgagacagcaactgcacaacttgcaagaaagtcacgattatgaaga 61
|||| ||||||||||||| |||||||||||||||||||||||||| ||| | || | |
Sbjct: 132 ggaggcagcaagcttgaggcagcaactgcacaacttgcaagaaagccacaagta--atca 75
Query: 62 cccatagattttgtaacttccttgaaagtaatgcagttgttgcctcatgcttggtgccac 121
| | |||||||| ||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 74 tctaatgattttgtgcctttcttgcaagtaatgcagttgttgcctcatgcttggtgccac 15
Query: 122 c 122
|
Sbjct: 14 c 14
>42091_osa-MIR444f:mirbase
Length = 154
Score = 73.8 bits (37), Expect = 3e-14
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 1 cggagtcagcaagcttgagacagcaactgcacaacttgcaagaaagtca 49
||||| ||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 154 cggaggcagcaagcttgaggcaacaactgcacaacttgcaagaaagtca 106
Score = 60.0 bits (30), Expect = 4e-10
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 81 ccttgaaagtaatgcagttgttgcctcatgcttggtgccacc 122
||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 44 ccttgcaagtaatgcagttgtaacctcatgcttggtgccacc 3
>42084_osa-MIR444b:mirbase
Length = 138
Score = 71.9 bits (36), Expect = 1e-13
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 2 ggagtcagcaagcttgagacagcaactgcacaacttgcaagaaa 45
|||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 129 ggaggcagcaagcttgagacaacaactgcacaacttgcaagaaa 86
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 10 caagcttgagacagcaactgcacaacttgcaagaaa 45
|||||||| | ||||||||||||| |||||||||||
Sbjct: 18 caagcttgtggcagcaactgcacatcttgcaagaaa 53
>42083_osa-MIR444b:mirbase
Length = 138
Score = 71.9 bits (36), Expect = 1e-13
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 2 ggagtcagcaagcttgagacagcaactgcacaacttgcaagaaa 45
|||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 129 ggaggcagcaagcttgagacaacaactgcacaacttgcaagaaa 86
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 10 caagcttgagacagcaactgcacaacttgcaagaaa 45
|||||||| | ||||||||||||| |||||||||||
Sbjct: 18 caagcttgtggcagcaactgcacatcttgcaagaaa 53
>42480_ssp-MIR444c:mirbase
Length = 108
Score = 69.9 bits (35), Expect = 4e-13
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 7 cagcaagcttgagacagcaactgcacaacttgcaagaaa 45
|||||||||||||||| ||||||||||||||||||||||
Sbjct: 106 cagcaagcttgagacaacaactgcacaacttgcaagaaa 68
Score = 40.1 bits (20), Expect = 4e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 10 caagcttgagacagcaactgcacaacttgcaagaaa 45
|||||| ||| ||||||||||| | |||||||||||
Sbjct: 6 caagctagaggcagcaactgcatatcttgcaagaaa 41
>42479_ssp-MIR444b:mirbase
Length = 106
Score = 67.9 bits (34), Expect = 2e-12
Identities = 89/106 (83%), Gaps = 1/106 (0%)
Strand = Plus / Minus
Query: 10 caagcttgagacagcaactgcacaacttgcaagaaagtcacgattatga-agacccatag 68
|||||||||| || ||||||||||||||||||||||| ||| | ||||| | || |
Sbjct: 106 caagcttgaggcaacaactgcacaacttgcaagaaagccacaagtatgatcctgcaattg 47
Query: 69 attttgtaacttccttgaaagtaatgcagttgttgcctcatgcttg 114
||||||| |||| |||| ||||||||||||| |||||||||||||
Sbjct: 46 attttgtgactttcttgcaagtaatgcagttcctgcctcatgcttg 1
Score = 42.1 bits (21), Expect = 9e-05
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 10 caagcttgagacagcaactgcacaacttgcaagaaagtcac 50
||||| |||| ||| ||||||| |||||||||||||||||
Sbjct: 1 caagcatgaggcaggaactgcattacttgcaagaaagtcac 41
>42649_tae-MIR444b:mirbase
Length = 162
Score = 65.9 bits (33), Expect = 6e-12
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 2 ggagtcagcaagcttgagacagcaactgcacaacttgcaagaaag 46
|||| ||||||||||||| |||||||||||| |||||||||||||
Sbjct: 153 ggaggcagcaagcttgaggcagcaactgcacgacttgcaagaaag 109
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 87 aagtaatgcagttgttgcctcatgcttggtgcc 119
|||||||||||||||||||||||||| ||||||
Sbjct: 47 aagtaatgcagttgttgcctcatgctcggtgcc 15
>42478_ssp-MIR444a:mirbase
Length = 105
Score = 65.9 bits (33), Expect = 6e-12
Identities = 87/105 (82%)
Strand = Plus / Minus
Query: 10 caagcttgagacagcaactgcacaacttgcaagaaagtcacgattatgaagacccataga 69
|||||||||| || |||||||||||||||||||||| ||| | |||| | || ||
Sbjct: 105 caagcttgaggcaacaactgcacaacttgcaagaaaaccacaagtatgtcctgcaattga 46
Query: 70 ttttgtaacttccttgaaagtaatgcagttgttgcctcatgcttg 114
|||||| |||| |||| ||||||||||||| |||||||||||||
Sbjct: 45 ttttgtgactttcttgcaagtaatgcagttcctgcctcatgcttg 1
Score = 42.1 bits (21), Expect = 9e-05
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 10 caagcttgagacagcaactgcacaacttgcaagaaagtcac 50
||||| |||| ||| ||||||| |||||||||||||||||
Sbjct: 1 caagcatgaggcaggaactgcattacttgcaagaaagtcac 41
>42086_osa-MIR444c:mirbase
Length = 138
Score = 63.9 bits (32), Expect = 3e-11
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 2 ggagtcagcaagcttgagacagcaactgcacaacttgcaagaaa 45
|||| |||||||||||||||| |||||||||| |||||||||||
Sbjct: 127 ggaggcagcaagcttgagacaacaactgcacagcttgcaagaaa 84
Score = 50.1 bits (25), Expect = 4e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 9 gcaagcttgagacagcaactgcacaacttgcaagaaa 45
||||||| ||||||||||||||| | |||||||||||
Sbjct: 21 gcaagctagagacagcaactgcatatcttgcaagaaa 57
>42085_osa-MIR444c:mirbase
Length = 138
Score = 63.9 bits (32), Expect = 3e-11
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 2 ggagtcagcaagcttgagacagcaactgcacaacttgcaagaaa 45
|||| |||||||||||||||| |||||||||| |||||||||||
Sbjct: 127 ggaggcagcaagcttgagacaacaactgcacagcttgcaagaaa 84
Score = 50.1 bits (25), Expect = 4e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 9 gcaagcttgagacagcaactgcacaacttgcaagaaa 45
||||||| ||||||||||||||| | |||||||||||
Sbjct: 21 gcaagctagagacagcaactgcatatcttgcaagaaa 57
>41893_hvu-MIR444a:mirbase
Length = 114
Score = 63.9 bits (32), Expect = 3e-11
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 7 cagcaagcttgagacagcaactgcacaacttgcaagaaag 46
||||||||||||| |||||||||||| |||||||||||||
Sbjct: 111 cagcaagcttgaggcagcaactgcacgacttgcaagaaag 72
>42082_osa-MIR444a:mirbase
Length = 131
Score = 61.9 bits (31), Expect = 1e-10
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 2 ggagtcagcaagcttgagacagcaactgcacaacttgcaagaa 44
|||| ||||||||||||| ||||||||||| ||||||||||||
Sbjct: 123 ggaggcagcaagcttgaggcagcaactgcataacttgcaagaa 81
>42081_osa-MIR444a:mirbase
Length = 131
Score = 61.9 bits (31), Expect = 1e-10
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 2 ggagtcagcaagcttgagacagcaactgcacaacttgcaagaa 44
|||| ||||||||||||| ||||||||||| ||||||||||||
Sbjct: 123 ggaggcagcaagcttgaggcagcaactgcataacttgcaagaa 81
>42648_tae-MIR444:mirbase
Length = 426
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 87 aagtaatgcagttgttgcctcatgcttggtgcc 119
|||||||||||||||||||||||||| ||||||
Sbjct: 54 aagtaatgcagttgttgcctcatgctcggtgcc 22
Score = 58.0 bits (29), Expect = 2e-09
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 2 ggagtcagcaagcttgagacagcaactgcacaacttgcaagaaag 46
|||| ||||||||||||| ||||||||||| |||||||||||||
Sbjct: 177 ggaggcagcaagcttgaggcagcaactgcatgacttgcaagaaag 133
>41805_bdi-MIR444:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 7 cagcaagcttgagacagcaactgcacaactt 37
||||||||||||| ||||||||||| |||||
Sbjct: 109 cagcaagcttgaggcagcaactgcataactt 79
>42090_osa-MIR444e:mirbase
Length = 140
Score = 42.1 bits (21), Expect = 9e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 11 aagcttgagacagcaactgcacaacttgc 39
||||||||| ||||||||||| |||||||
Sbjct: 119 aagcttgaggcagcaactgcataacttgc 91
