miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AF474373.1/52258-52134 112509:Hordeum vulgare
           subsp. vulgare (domesticated barley)
          Length = 125

 Score = 97.6 bits (49), Expect = 4e-20
 Identities = 92/105 (87%), Gaps = 1/105 (0%)
 Strand = Plus / Plus

                                                                       
Query: 8   atactccctctgtccggaa-tatttgtcacaagaacagatgtatctagatgtattttagt 66
           ||||||||||||||||||| ||||||||| | |||  |||||||||||||||||||||||
Sbjct: 4   atactccctctgtccggaaatatttgtcataggaatggatgtatctagatgtattttagt 63

                                                        
Query: 67  tttaaatacatcattttgtatccatttatgcgacaagtaattccg 111
           | || ||| |||  ||| ||||||||| || ||||||||||||||
Sbjct: 64  tctagatatatccatttttatccatttgtgtgacaagtaattccg 108




>RF00906;MIR1122;EU282650.1/1397-1273 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 125

 Score = 83.8 bits (42), Expect = 5e-16
 Identities = 60/66 (90%)
 Strand = Plus / Plus

                                                                       
Query: 44  gatgtatctagatgtattttagttttaaatacatcattttgtatccatttatgcgacaag 103
           |||||||||||||||||||||||| || |||||||  ||| |||| ||||||||||||||
Sbjct: 41  gatgtatctagatgtattttagttctagatacatccatttttatcaatttatgcgacaag 100

                 
Query: 104 taattc 109
           ||||||
Sbjct: 101 taattc 106




>RF00906;MIR1122;L41869.1/3010-3134 4513:Hordeum vulgare
          Length = 125

 Score = 81.8 bits (41), Expect = 2e-15
 Identities = 90/105 (85%), Gaps = 1/105 (0%)
 Strand = Plus / Plus

                                                                       
Query: 8   atactccctctgtccggaa-tatttgtcacaagaacagatgtatctagatgtattttagt 66
           |||||||||  |||||||| || |||||  |||||  |||||||||||||||||||||||
Sbjct: 4   atactcccttcgtccggaaatacttgtccaaagaatggatgtatctagatgtattttagt 63

                                                        
Query: 67  tttaaatacatcattttgtatccatttatgcgacaagtaattccg 111
           | || |||||||  ||| ||| ||||| |||||||||||||||||
Sbjct: 64  tatagatacatccatttctattcatttttgcgacaagtaattccg 108




>RF00906;MIR1122;AF325196.1/33744-33620 4565:Triticum aestivum
           (bread wheat)
          Length = 125

 Score = 79.8 bits (40), Expect = 8e-15
 Identities = 58/64 (90%)
 Strand = Plus / Minus

                                                                       
Query: 48  tatctagatgtattttagttttaaatacatcattttgtatccatttatgcgacaagtaat 107
           ||||||||||||||||| || || |||||||  ||| |||||||||||||||||||||||
Sbjct: 81  tatctagatgtattttaattctagatacatccatttttatccatttatgcgacaagtaat 22

               
Query: 108 tccg 111
           ||||
Sbjct: 21  tccg 18




>RF00906;MIR1122;DJ023136.1/240-116 4513:Hordeum vulgare
          Length = 125

 Score = 71.9 bits (36), Expect = 2e-12
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                       
Query: 44  gatgtatctagatgtattttagttttaaatacatcattttgtatccatttatgcgacaag 103
           |||||||||||||| ||||||||| |||||||||   ||| ||||||||| ||||| |||
Sbjct: 85  gatgtatctagatgcattttagttctaaatacattcatttctatccatttttgcgataag 26

                   
Query: 104 taattccg 111
           ||||||||
Sbjct: 25  taattccg 18




>RF00906;MIR1122;AF548379.1/5968-6092 37682:Aegilops tauschii
          Length = 125

 Score = 63.9 bits (32), Expect = 5e-10
 Identities = 59/68 (86%)
 Strand = Plus / Plus

                                                                       
Query: 44  gatgtatctagatgtattttagttttaaatacatcattttgtatccatttatgcgacaag 103
           |||||||||||| ||||||||||| || |||||||  ||| ||||||||| ||| |||||
Sbjct: 41  gatgtatctagacgtattttagttctagatacatccatttttatccatttctgcaacaag 100

                   
Query: 104 taattccg 111
           || |||||
Sbjct: 101 tagttccg 108




>RF00906;MIR1122;AY951945.1/93583-93458 4568:Triticum monococcum
          Length = 126

 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                      
Query: 53  agatgtattttagttttaaatacatcattttgtatccatttatgcgacaagtaattccg 111
           ||||||||||||||| || |||||||  ||| ||||||||| ||||||||||| |||||
Sbjct: 76  agatgtattttagttctagatacatccatttatatccatttctgcgacaagtatttccg 18




>RF00906;MIR1122;DQ537336.1/120340-120474 4565:Triticum aestivum
           (bread wheat)
          Length = 135

 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 46/51 (90%)
 Strand = Plus / Plus

                                                              
Query: 43  agatgtatctagatgtattttagttttaaatacatcattttgtatccattt 93
           |||||||||||||||||| ||||||||| ||| ||| |||| |||||||||
Sbjct: 50  agatgtatctagatgtatattagttttagatatatccttttttatccattt 100




>RF00906;MIR1122;AB238931.1/2749-2883 4568:Triticum monococcum
          Length = 135

 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                             
Query: 44 gatgtatctagatgtattttagttttaaatacatc 78
          |||||||||||||||||||||||| ||||||||||
Sbjct: 85 gatgtatctagatgtattttagttctaaatacatc 51




>RF00906;MIR1122;AF022725.1/11631-11507 4513:Hordeum vulgare
          Length = 125

 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                       
Query: 45  atgtatctagatgtattttagttttaaatacatcattttgtatccatttatgcgacaagt 104
           ||||||||||||||||| || || || |||||||  ||| ||| |||||||| |||||||
Sbjct: 84  atgtatctagatgtattataattctagatacatccatttttatacatttatgtgacaagt 25

                  
Query: 105 aattccg 111
           |||||||
Sbjct: 24  aattccg 18




>RF00906;MIR1122;AY235466.1/780-656 4565:Triticum aestivum (bread
           wheat)
          Length = 125

 Score = 60.0 bits (30), Expect = 8e-09
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                       
Query: 44  gatgtatctagatgtattttagttttaaatacatcattttgtatccatttatgcgacaag 103
           |||||||||||||||||||||||| || |||||||  ||| ||| ||||| | |||||||
Sbjct: 41  gatgtatctagatgtattttagttctagatacatccatttttatgcatttctacgacaag 100

             
Query: 104 ta 105
           ||
Sbjct: 101 ta 102




>RF00906;MIR1122;AY368673.1/196592-196716 4571:Triticum turgidum
          Length = 125

 Score = 60.0 bits (30), Expect = 8e-09
 Identities = 82/98 (83%), Gaps = 1/98 (1%)
 Strand = Plus / Minus

                                                                       
Query: 9   tactccctctgtccggaa-tatttgtcacaagaacagatgtatctagatgtattttagtt 67
           |||||||||||||||||| || |||||| | |||  |||||| ||||| |||||||||||
Sbjct: 121 tactccctctgtccggaaatacttgtcagaggaatggatgtacctagacgtattttagtt 62

                                                 
Query: 68  ttaaatacatcattttgtatccatttatgcgacaagta 105
            || |||||||  ||| ||| ||||| | |||||||||
Sbjct: 61  ctagatacatccatttttatgcatttctccgacaagta 24




>RF00906;MIR1122;AY235464.1/714-838 4565:Triticum aestivum (bread
           wheat)
          Length = 125

 Score = 60.0 bits (30), Expect = 8e-09
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                       
Query: 44  gatgtatctagatgtattttagttttaaatacatcattttgtatccatttatgcgacaag 103
           |||||||||||||||||||||||| || |||||||  ||| ||| ||||| | |||||||
Sbjct: 85  gatgtatctagatgtattttagttctagatacatccatttttatgcatttctacgacaag 26

             
Query: 104 ta 105
           ||
Sbjct: 25  ta 24




>RF00906;MIR1122;BT009606.1/1324-1200 4565:Triticum aestivum (bread
           wheat)
          Length = 125

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 59/69 (85%)
 Strand = Plus / Minus

                                                                       
Query: 45  atgtatctagatgtattttagttttaaatacatcattttgtatccatttatgcgacaagt 104
           |||||||||||||||||||| || || |||||||  ||| ||||||||| || ||| |||
Sbjct: 84  atgtatctagatgtattttaattgtagatacatccatttttatccatttttgtgacgagt 25

                    
Query: 105 aattccgaa 113
           |||| ||||
Sbjct: 24  aatttcgaa 16




>RF00906;MIR1122;AY663392.1/94965-94831 4565:Triticum aestivum
          (bread wheat)
          Length = 135

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                           
Query: 45 atgtatctagatgtattttagttttaaatacatcattttgtatccattt 93
          |||||| |||||||||||||||| ||  ||||||||||| |||||||||
Sbjct: 84 atgtatatagatgtattttagttctaggtacatcattttttatccattt 36




>RF00906;MIR1122;AB298185.1/18759-18893 4565:Triticum aestivum
          (bread wheat)
          Length = 135

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                           
Query: 44 gatgtatctagatgtattttagttttaaatacatcattttgtatccatt 92
          |||||||||||||||||||||||| || ||||| || ||| ||||||||
Sbjct: 85 gatgtatctagatgtattttagttctagatacaccactttttatccatt 37




>RF00906;MIR1122;AF459085.1/1867-1743 4513:Hordeum vulgare
          Length = 125

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 87/105 (82%), Gaps = 1/105 (0%)
 Strand = Plus / Minus

                                                                       
Query: 8   atactccctctgtccggaat-atttgtcacaagaacagatgtatctagatgtattttagt 66
           |||||||||| ||||||||| |||||||| |  ||  |||||||||||| ||||||||||
Sbjct: 122 atactccctccgtccggaattatttgtcatagaaatggatgtatctagacgtattttagt 63

                                                        
Query: 67  tttaaatacatcattttgtatccatttatgcgacaagtaattccg 111
           | || |||||||  ||| | |||||||   ||||||||| |||||
Sbjct: 62  tctagatacatccatttctttccattttgacgacaagtacttccg 18




>RF00906;MIR1122;EU812563.1/59152-59276 112509:Hordeum vulgare
           subsp. vulgare (domesticated barley)
          Length = 125

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 60/68 (88%), Gaps = 2/68 (2%)
 Strand = Plus / Minus

                                                                       
Query: 45  atgtatctagatgtattttagttttaaataca-tcattttgtatccatttatgcgacaag 103
           |||||||||||| |||||||||| || ||||| ||||||| |||  |||| |||||||||
Sbjct: 84  atgtatctagatatattttagttctagatacattcatttt-tatatatttgtgcgacaag 26

                   
Query: 104 taattccg 111
           ||||||||
Sbjct: 25  taattccg 18




>RF00906;MIR1122;EF540321.1/236564-236678 4571:Triticum turgidum
          Length = 115

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                             
Query: 44 gatgtatctagatgtattttagttttaaatacatc 78
          |||||||||||||||||||||||| || |||||||
Sbjct: 41 gatgtatctagatgtattttagttatagatacatc 75




>RF00906;MIR1122;AB298184.1/15044-14931 4565:Triticum aestivum
          (bread wheat)
          Length = 114

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                             
Query: 44 gatgtatctagatgtattttagttttaaatacatc 78
          |||||||||||||||||||||||| || |||||||
Sbjct: 40 gatgtatctagatgtattttagttctagatacatc 74




>RF00906;MIR1122;EU117148.1/1866-1980 4571:Triticum turgidum
          Length = 115

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 44 gatgtatctagatgtattttagtttta 70
          |||||||||||||||||||||||||||
Sbjct: 41 gatgtatctagatgtattttagtttta 67




>RF00906;MIR1122;DQ904440.1/75385-75530 52163:Triticum monococcum
          subsp. aegilopoides
          Length = 146

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                             
Query: 44 gatgtatctagatgtattttagttttaaatacatc 78
          |||||||||||||||||||||||| || |||||||
Sbjct: 62 gatgtatctagatgtattttagttctacatacatc 96




>RF00906;MIR1122;AF532104.1/14817-14951 37682:Aegilops tauschii
          Length = 135

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                             
Query: 43 agatgtatctagatgtattttagttttaaatacatcattttgtatccattt 93
          |||||||||||||||||||||| || || ||||||  |||| |||||||||
Sbjct: 86 agatgtatctagatgtattttaattctagatacattcttttttatccattt 36




>RF00906;MIR1122;AY013754.1/1932-2046 37682:Aegilops tauschii
          Length = 115

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                             
Query: 44 gatgtatctagatgtattttagttttaaatacatc 78
          |||||||||||||||||||||||| || |||||||
Sbjct: 75 gatgtatctagatgtattttagttctagatacatc 41




>RF00906;MIR1122;DQ889708.1/343-221 4565:Triticum aestivum (bread
           wheat)
          Length = 123

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                         
Query: 86  atccatttatgcgacaagtaattccgaatt 115
           |||||||| |||||||||||||||||||||
Sbjct: 51  atccatttctgcgacaagtaattccgaatt 22




>RF00906;MIR1122;AY491681.1/88752-88866 4568:Triticum monococcum
          Length = 115

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                            
Query: 45 atgtatctagatgtattttagttttaaatacatc 78
          ||||||||||||||||||||||| || |||||||
Sbjct: 74 atgtatctagatgtattttagttctagatacatc 41




>RF00906;MIR1122;EF028786.1/1091-968 4565:Triticum aestivum (bread
          wheat)
          Length = 124

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 44 gatgtatctagatgtattttagttttaaatacat 77
          |||||||||||| ||||||||||| |||||||||
Sbjct: 41 gatgtatctagacgtattttagttctaaatacat 74




>RF00906;MIR1122;AY951949.1/1544-1411 4568:Triticum monococcum
          Length = 134

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                        
Query: 45 atgtatctagatgtattttagttttaaata 74
          ||||||||| ||||||||||||||||||||
Sbjct: 83 atgtatctaaatgtattttagttttaaata 54




>RF00906;MIR1122;CT009625.1/8885-8999 37682:Aegilops tauschii
          Length = 115

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                            
Query: 45 atgtatctagatgtattttagttttaaatacatc 78
          ||||||||||||||||||||||| || |||||||
Sbjct: 74 atgtatctagatgtattttagttatagatacatc 41




>RF00906;MIR1122;DQ145552.1/668-803 4573:Aegilops speltoides
          Length = 136

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                            
Query: 44 gatgtatctagatgtattttagttttaaatacat 77
          |||||||||||||||||||||||| || ||||||
Sbjct: 85 gatgtatctagatgtattttagttctagatacat 52




>RF00906;MIR1122;DQ245819.1/394-508 4577:Zea mays
          Length = 115

 Score = 50.1 bits (25), Expect = 8e-06
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                           
Query: 43 agatgtatctagatgtattttagttttaaatac 75
          |||| |||||||||||||||||||| |||||||
Sbjct: 76 agatatatctagatgtattttagttctaaatac 44




>RF00906;MIR1122;FJ225151.1/115-1 4565:Triticum aestivum (bread
          wheat)
          Length = 115

 Score = 50.1 bits (25), Expect = 8e-06
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                           
Query: 45 atgtatctagatgtattttagttttaaatacat 77
          ||||||||||||||||||||||| || ||||||
Sbjct: 79 atgtatctagatgtattttagttctagatacat 47




>RF00906;MIR1122;AY951945.1/36609-36485 4568:Triticum monococcum
          Length = 125

 Score = 50.1 bits (25), Expect = 8e-06
 Identities = 45/49 (91%), Gaps = 2/49 (4%)
 Strand = Plus / Plus

                                                           
Query: 46 tgtatctagatgtattttagttttaaataca-tcattttgtatccattt 93
          |||||||||||||||||||||| || ||||| ||||||| |||||||||
Sbjct: 43 tgtatctagatgtattttagttctagatacattcatttt-tatccattt 90




>RF00906;MIR1122;AM932682.1/94335-94221 4565:Triticum aestivum
           (bread wheat)
          Length = 115

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 86  atccatttatgcgacaagtaattc 109
           ||||||||||||||||||||||||
Sbjct: 73  atccatttatgcgacaagtaattc 96




>RF00906;MIR1122;BT009295.1/1923-1809 4565:Triticum aestivum
          (bread wheat)
          Length = 115

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                             
Query: 44 gatgtatctagatgtattttagttttaaatacatc 78
          |||||||| ||||||||||||||| || |||||||
Sbjct: 75 gatgtatcaagatgtattttagttctagatacatc 41




>RF00906;MIR1122;X13580.1/135-24 4565:Triticum aestivum (bread
          wheat)
          Length = 112

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                             
Query: 43 agatgtatctagatgtattttagttttaaatacat 77
          |||||||||||| |||||||||||| || ||||||
Sbjct: 40 agatgtatctagttgtattttagttctagatacat 74




>RF00906;MIR1122;AM932683.1/23310-23434 4565:Triticum aestivum
           (bread wheat)
          Length = 125

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 81/99 (81%), Gaps = 1/99 (1%)
 Strand = Plus / Plus

                                                                       
Query: 8   atactccctctgtccggaa-tatttgtcacaagaacagatgtatctagatgtattttagt 66
           ||||||| || |||||||| || |||||  |||||  ||||||| ||||  |||||||||
Sbjct: 4   atactccttccgtccggaaatacttgtcgaaagaatggatgtatttagacatattttagt 63

                                                  
Query: 67  tttaaatacatcattttgtatccatttatgcgacaagta 105
           |||| || ||||  ||| ||| ||||| |||||||||||
Sbjct: 64  tttagatgcatccatttatattcatttttgcgacaagta 102




>RF00906;MIR1122;AM932686.1/4713-4599 4565:Triticum aestivum
          (bread wheat)
          Length = 115

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                             
Query: 44 gatgtatctagatgtattttagttttaaatacatc 78
          |||||||||||| ||||||||||| || |||||||
Sbjct: 75 gatgtatctagacgtattttagttctagatacatc 41




>RF00906;MIR1122;AY137517.1/112-234 112509:Hordeum vulgare subsp.
          vulgare (domesticated barley)
          Length = 123

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                 
Query: 45 atgtatctagatgtattttagttttaaatacatcatttt 83
          |||||||||||  |||||||||| || ||||||||||||
Sbjct: 82 atgtatctagacttattttagttatacatacatcatttt 44




>RF00906;MIR1122;EU282564.1/350-463 112509:Hordeum vulgare subsp.
          vulgare (domesticated barley)
          Length = 114

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                             
Query: 44 gatgtatctagatgtattttagttttaaatacatc 78
          ||||||||||||||||||| |||| || |||||||
Sbjct: 41 gatgtatctagatgtatttcagttctagatacatc 75




>RF00906;MIR1122;EU159422.1/10160-10283 37682:Aegilops tauschii
          Length = 124

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                            
Query: 44 gatgtatctagatgtattttagttttaaatacatcattttgtatccattt 93
          |||||||||||| |||||||| || || |||||||  ||| |||||||||
Sbjct: 41 gatgtatctagacgtattttacttctagatacatccatttttatccattt 90