miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AF474373.1/52258-52134 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 97.6 bits (49), Expect = 4e-20
Identities = 92/105 (87%), Gaps = 1/105 (0%)
Strand = Plus / Plus
Query: 8 atactccctctgtccggaa-tatttgtcacaagaacagatgtatctagatgtattttagt 66
||||||||||||||||||| ||||||||| | ||| |||||||||||||||||||||||
Sbjct: 4 atactccctctgtccggaaatatttgtcataggaatggatgtatctagatgtattttagt 63
Query: 67 tttaaatacatcattttgtatccatttatgcgacaagtaattccg 111
| || ||| ||| ||| ||||||||| || ||||||||||||||
Sbjct: 64 tctagatatatccatttttatccatttgtgtgacaagtaattccg 108
>RF00906;MIR1122;EU282650.1/1397-1273 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 125
Score = 83.8 bits (42), Expect = 5e-16
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 44 gatgtatctagatgtattttagttttaaatacatcattttgtatccatttatgcgacaag 103
|||||||||||||||||||||||| || ||||||| ||| |||| ||||||||||||||
Sbjct: 41 gatgtatctagatgtattttagttctagatacatccatttttatcaatttatgcgacaag 100
Query: 104 taattc 109
||||||
Sbjct: 101 taattc 106
>RF00906;MIR1122;L41869.1/3010-3134 4513:Hordeum vulgare
Length = 125
Score = 81.8 bits (41), Expect = 2e-15
Identities = 90/105 (85%), Gaps = 1/105 (0%)
Strand = Plus / Plus
Query: 8 atactccctctgtccggaa-tatttgtcacaagaacagatgtatctagatgtattttagt 66
||||||||| |||||||| || ||||| ||||| |||||||||||||||||||||||
Sbjct: 4 atactcccttcgtccggaaatacttgtccaaagaatggatgtatctagatgtattttagt 63
Query: 67 tttaaatacatcattttgtatccatttatgcgacaagtaattccg 111
| || ||||||| ||| ||| ||||| |||||||||||||||||
Sbjct: 64 tatagatacatccatttctattcatttttgcgacaagtaattccg 108
>RF00906;MIR1122;AF325196.1/33744-33620 4565:Triticum aestivum
(bread wheat)
Length = 125
Score = 79.8 bits (40), Expect = 8e-15
Identities = 58/64 (90%)
Strand = Plus / Minus
Query: 48 tatctagatgtattttagttttaaatacatcattttgtatccatttatgcgacaagtaat 107
||||||||||||||||| || || ||||||| ||| |||||||||||||||||||||||
Sbjct: 81 tatctagatgtattttaattctagatacatccatttttatccatttatgcgacaagtaat 22
Query: 108 tccg 111
||||
Sbjct: 21 tccg 18
>RF00906;MIR1122;DJ023136.1/240-116 4513:Hordeum vulgare
Length = 125
Score = 71.9 bits (36), Expect = 2e-12
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 44 gatgtatctagatgtattttagttttaaatacatcattttgtatccatttatgcgacaag 103
|||||||||||||| ||||||||| ||||||||| ||| ||||||||| ||||| |||
Sbjct: 85 gatgtatctagatgcattttagttctaaatacattcatttctatccatttttgcgataag 26
Query: 104 taattccg 111
||||||||
Sbjct: 25 taattccg 18
>RF00906;MIR1122;AF548379.1/5968-6092 37682:Aegilops tauschii
Length = 125
Score = 63.9 bits (32), Expect = 5e-10
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 44 gatgtatctagatgtattttagttttaaatacatcattttgtatccatttatgcgacaag 103
|||||||||||| ||||||||||| || ||||||| ||| ||||||||| ||| |||||
Sbjct: 41 gatgtatctagacgtattttagttctagatacatccatttttatccatttctgcaacaag 100
Query: 104 taattccg 111
|| |||||
Sbjct: 101 tagttccg 108
>RF00906;MIR1122;AY951945.1/93583-93458 4568:Triticum monococcum
Length = 126
Score = 61.9 bits (31), Expect = 2e-09
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 53 agatgtattttagttttaaatacatcattttgtatccatttatgcgacaagtaattccg 111
||||||||||||||| || ||||||| ||| ||||||||| ||||||||||| |||||
Sbjct: 76 agatgtattttagttctagatacatccatttatatccatttctgcgacaagtatttccg 18
>RF00906;MIR1122;DQ537336.1/120340-120474 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 61.9 bits (31), Expect = 2e-09
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 43 agatgtatctagatgtattttagttttaaatacatcattttgtatccattt 93
|||||||||||||||||| ||||||||| ||| ||| |||| |||||||||
Sbjct: 50 agatgtatctagatgtatattagttttagatatatccttttttatccattt 100
>RF00906;MIR1122;AB238931.1/2749-2883 4568:Triticum monococcum
Length = 135
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 44 gatgtatctagatgtattttagttttaaatacatc 78
|||||||||||||||||||||||| ||||||||||
Sbjct: 85 gatgtatctagatgtattttagttctaaatacatc 51
>RF00906;MIR1122;AF022725.1/11631-11507 4513:Hordeum vulgare
Length = 125
Score = 61.9 bits (31), Expect = 2e-09
Identities = 58/67 (86%)
Strand = Plus / Minus
Query: 45 atgtatctagatgtattttagttttaaatacatcattttgtatccatttatgcgacaagt 104
||||||||||||||||| || || || ||||||| ||| ||| |||||||| |||||||
Sbjct: 84 atgtatctagatgtattataattctagatacatccatttttatacatttatgtgacaagt 25
Query: 105 aattccg 111
|||||||
Sbjct: 24 aattccg 18
>RF00906;MIR1122;AY235466.1/780-656 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 60.0 bits (30), Expect = 8e-09
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 44 gatgtatctagatgtattttagttttaaatacatcattttgtatccatttatgcgacaag 103
|||||||||||||||||||||||| || ||||||| ||| ||| ||||| | |||||||
Sbjct: 41 gatgtatctagatgtattttagttctagatacatccatttttatgcatttctacgacaag 100
Query: 104 ta 105
||
Sbjct: 101 ta 102
>RF00906;MIR1122;AY368673.1/196592-196716 4571:Triticum turgidum
Length = 125
Score = 60.0 bits (30), Expect = 8e-09
Identities = 82/98 (83%), Gaps = 1/98 (1%)
Strand = Plus / Minus
Query: 9 tactccctctgtccggaa-tatttgtcacaagaacagatgtatctagatgtattttagtt 67
|||||||||||||||||| || |||||| | ||| |||||| ||||| |||||||||||
Sbjct: 121 tactccctctgtccggaaatacttgtcagaggaatggatgtacctagacgtattttagtt 62
Query: 68 ttaaatacatcattttgtatccatttatgcgacaagta 105
|| ||||||| ||| ||| ||||| | |||||||||
Sbjct: 61 ctagatacatccatttttatgcatttctccgacaagta 24
>RF00906;MIR1122;AY235464.1/714-838 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 60.0 bits (30), Expect = 8e-09
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 44 gatgtatctagatgtattttagttttaaatacatcattttgtatccatttatgcgacaag 103
|||||||||||||||||||||||| || ||||||| ||| ||| ||||| | |||||||
Sbjct: 85 gatgtatctagatgtattttagttctagatacatccatttttatgcatttctacgacaag 26
Query: 104 ta 105
||
Sbjct: 25 ta 24
>RF00906;MIR1122;BT009606.1/1324-1200 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 58.0 bits (29), Expect = 3e-08
Identities = 59/69 (85%)
Strand = Plus / Minus
Query: 45 atgtatctagatgtattttagttttaaatacatcattttgtatccatttatgcgacaagt 104
|||||||||||||||||||| || || ||||||| ||| ||||||||| || ||| |||
Sbjct: 84 atgtatctagatgtattttaattgtagatacatccatttttatccatttttgtgacgagt 25
Query: 105 aattccgaa 113
|||| ||||
Sbjct: 24 aatttcgaa 16
>RF00906;MIR1122;AY663392.1/94965-94831 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 58.0 bits (29), Expect = 3e-08
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 45 atgtatctagatgtattttagttttaaatacatcattttgtatccattt 93
|||||| |||||||||||||||| || ||||||||||| |||||||||
Sbjct: 84 atgtatatagatgtattttagttctaggtacatcattttttatccattt 36
>RF00906;MIR1122;AB298185.1/18759-18893 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 58.0 bits (29), Expect = 3e-08
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 44 gatgtatctagatgtattttagttttaaatacatcattttgtatccatt 92
|||||||||||||||||||||||| || ||||| || ||| ||||||||
Sbjct: 85 gatgtatctagatgtattttagttctagatacaccactttttatccatt 37
>RF00906;MIR1122;AF459085.1/1867-1743 4513:Hordeum vulgare
Length = 125
Score = 58.0 bits (29), Expect = 3e-08
Identities = 87/105 (82%), Gaps = 1/105 (0%)
Strand = Plus / Minus
Query: 8 atactccctctgtccggaat-atttgtcacaagaacagatgtatctagatgtattttagt 66
|||||||||| ||||||||| |||||||| | || |||||||||||| ||||||||||
Sbjct: 122 atactccctccgtccggaattatttgtcatagaaatggatgtatctagacgtattttagt 63
Query: 67 tttaaatacatcattttgtatccatttatgcgacaagtaattccg 111
| || ||||||| ||| | ||||||| ||||||||| |||||
Sbjct: 62 tctagatacatccatttctttccattttgacgacaagtacttccg 18
>RF00906;MIR1122;EU812563.1/59152-59276 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 56.0 bits (28), Expect = 1e-07
Identities = 60/68 (88%), Gaps = 2/68 (2%)
Strand = Plus / Minus
Query: 45 atgtatctagatgtattttagttttaaataca-tcattttgtatccatttatgcgacaag 103
|||||||||||| |||||||||| || ||||| ||||||| ||| |||| |||||||||
Sbjct: 84 atgtatctagatatattttagttctagatacattcatttt-tatatatttgtgcgacaag 26
Query: 104 taattccg 111
||||||||
Sbjct: 25 taattccg 18
>RF00906;MIR1122;EF540321.1/236564-236678 4571:Triticum turgidum
Length = 115
Score = 54.0 bits (27), Expect = 5e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 44 gatgtatctagatgtattttagttttaaatacatc 78
|||||||||||||||||||||||| || |||||||
Sbjct: 41 gatgtatctagatgtattttagttatagatacatc 75
>RF00906;MIR1122;AB298184.1/15044-14931 4565:Triticum aestivum
(bread wheat)
Length = 114
Score = 54.0 bits (27), Expect = 5e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 44 gatgtatctagatgtattttagttttaaatacatc 78
|||||||||||||||||||||||| || |||||||
Sbjct: 40 gatgtatctagatgtattttagttctagatacatc 74
>RF00906;MIR1122;EU117148.1/1866-1980 4571:Triticum turgidum
Length = 115
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 44 gatgtatctagatgtattttagtttta 70
|||||||||||||||||||||||||||
Sbjct: 41 gatgtatctagatgtattttagtttta 67
>RF00906;MIR1122;DQ904440.1/75385-75530 52163:Triticum monococcum
subsp. aegilopoides
Length = 146
Score = 54.0 bits (27), Expect = 5e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 44 gatgtatctagatgtattttagttttaaatacatc 78
|||||||||||||||||||||||| || |||||||
Sbjct: 62 gatgtatctagatgtattttagttctacatacatc 96
>RF00906;MIR1122;AF532104.1/14817-14951 37682:Aegilops tauschii
Length = 135
Score = 54.0 bits (27), Expect = 5e-07
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 43 agatgtatctagatgtattttagttttaaatacatcattttgtatccattt 93
|||||||||||||||||||||| || || |||||| |||| |||||||||
Sbjct: 86 agatgtatctagatgtattttaattctagatacattcttttttatccattt 36
>RF00906;MIR1122;AY013754.1/1932-2046 37682:Aegilops tauschii
Length = 115
Score = 54.0 bits (27), Expect = 5e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 44 gatgtatctagatgtattttagttttaaatacatc 78
|||||||||||||||||||||||| || |||||||
Sbjct: 75 gatgtatctagatgtattttagttctagatacatc 41
>RF00906;MIR1122;DQ889708.1/343-221 4565:Triticum aestivum (bread
wheat)
Length = 123
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 86 atccatttatgcgacaagtaattccgaatt 115
|||||||| |||||||||||||||||||||
Sbjct: 51 atccatttctgcgacaagtaattccgaatt 22
>RF00906;MIR1122;AY491681.1/88752-88866 4568:Triticum monococcum
Length = 115
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 45 atgtatctagatgtattttagttttaaatacatc 78
||||||||||||||||||||||| || |||||||
Sbjct: 74 atgtatctagatgtattttagttctagatacatc 41
>RF00906;MIR1122;EF028786.1/1091-968 4565:Triticum aestivum (bread
wheat)
Length = 124
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 44 gatgtatctagatgtattttagttttaaatacat 77
|||||||||||| ||||||||||| |||||||||
Sbjct: 41 gatgtatctagacgtattttagttctaaatacat 74
>RF00906;MIR1122;AY951949.1/1544-1411 4568:Triticum monococcum
Length = 134
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 45 atgtatctagatgtattttagttttaaata 74
||||||||| ||||||||||||||||||||
Sbjct: 83 atgtatctaaatgtattttagttttaaata 54
>RF00906;MIR1122;CT009625.1/8885-8999 37682:Aegilops tauschii
Length = 115
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 45 atgtatctagatgtattttagttttaaatacatc 78
||||||||||||||||||||||| || |||||||
Sbjct: 74 atgtatctagatgtattttagttatagatacatc 41
>RF00906;MIR1122;DQ145552.1/668-803 4573:Aegilops speltoides
Length = 136
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 44 gatgtatctagatgtattttagttttaaatacat 77
|||||||||||||||||||||||| || ||||||
Sbjct: 85 gatgtatctagatgtattttagttctagatacat 52
>RF00906;MIR1122;DQ245819.1/394-508 4577:Zea mays
Length = 115
Score = 50.1 bits (25), Expect = 8e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 43 agatgtatctagatgtattttagttttaaatac 75
|||| |||||||||||||||||||| |||||||
Sbjct: 76 agatatatctagatgtattttagttctaaatac 44
>RF00906;MIR1122;FJ225151.1/115-1 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 50.1 bits (25), Expect = 8e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 45 atgtatctagatgtattttagttttaaatacat 77
||||||||||||||||||||||| || ||||||
Sbjct: 79 atgtatctagatgtattttagttctagatacat 47
>RF00906;MIR1122;AY951945.1/36609-36485 4568:Triticum monococcum
Length = 125
Score = 50.1 bits (25), Expect = 8e-06
Identities = 45/49 (91%), Gaps = 2/49 (4%)
Strand = Plus / Plus
Query: 46 tgtatctagatgtattttagttttaaataca-tcattttgtatccattt 93
|||||||||||||||||||||| || ||||| ||||||| |||||||||
Sbjct: 43 tgtatctagatgtattttagttctagatacattcatttt-tatccattt 90
>RF00906;MIR1122;AM932682.1/94335-94221 4565:Triticum aestivum
(bread wheat)
Length = 115
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 86 atccatttatgcgacaagtaattc 109
||||||||||||||||||||||||
Sbjct: 73 atccatttatgcgacaagtaattc 96
>RF00906;MIR1122;BT009295.1/1923-1809 4565:Triticum aestivum
(bread wheat)
Length = 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 44 gatgtatctagatgtattttagttttaaatacatc 78
|||||||| ||||||||||||||| || |||||||
Sbjct: 75 gatgtatcaagatgtattttagttctagatacatc 41
>RF00906;MIR1122;X13580.1/135-24 4565:Triticum aestivum (bread
wheat)
Length = 112
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 43 agatgtatctagatgtattttagttttaaatacat 77
|||||||||||| |||||||||||| || ||||||
Sbjct: 40 agatgtatctagttgtattttagttctagatacat 74
>RF00906;MIR1122;AM932683.1/23310-23434 4565:Triticum aestivum
(bread wheat)
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 81/99 (81%), Gaps = 1/99 (1%)
Strand = Plus / Plus
Query: 8 atactccctctgtccggaa-tatttgtcacaagaacagatgtatctagatgtattttagt 66
||||||| || |||||||| || ||||| ||||| ||||||| |||| |||||||||
Sbjct: 4 atactccttccgtccggaaatacttgtcgaaagaatggatgtatttagacatattttagt 63
Query: 67 tttaaatacatcattttgtatccatttatgcgacaagta 105
|||| || |||| ||| ||| ||||| |||||||||||
Sbjct: 64 tttagatgcatccatttatattcatttttgcgacaagta 102
>RF00906;MIR1122;AM932686.1/4713-4599 4565:Triticum aestivum
(bread wheat)
Length = 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 44 gatgtatctagatgtattttagttttaaatacatc 78
|||||||||||| ||||||||||| || |||||||
Sbjct: 75 gatgtatctagacgtattttagttctagatacatc 41
>RF00906;MIR1122;AY137517.1/112-234 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 123
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 45 atgtatctagatgtattttagttttaaatacatcatttt 83
||||||||||| |||||||||| || ||||||||||||
Sbjct: 82 atgtatctagacttattttagttatacatacatcatttt 44
>RF00906;MIR1122;EU282564.1/350-463 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 114
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 44 gatgtatctagatgtattttagttttaaatacatc 78
||||||||||||||||||| |||| || |||||||
Sbjct: 41 gatgtatctagatgtatttcagttctagatacatc 75
>RF00906;MIR1122;EU159422.1/10160-10283 37682:Aegilops tauschii
Length = 124
Score = 44.1 bits (22), Expect = 5e-04
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 44 gatgtatctagatgtattttagttttaaatacatcattttgtatccattt 93
|||||||||||| |||||||| || || ||||||| ||| |||||||||
Sbjct: 41 gatgtatctagacgtattttacttctagatacatccatttttatccattt 90
