miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;EU869041.1/17-203 39947:Oryza sativa Japonica Group
Length = 187
Score = 113 bits (57), Expect = 1e-24
Identities = 119/138 (86%), Gaps = 5/138 (3%)
Strand = Plus / Plus
Query: 66 cagctgcttgttcatggttcccactatcctatctccattagaacacgaggagataggctt 125
||||||||||||||||||||||||||| ||||||| || ||| | |||||||||||
Sbjct: 53 cagctgcttgttcatggttcccactattctatctc-ataggaaaa----gagataggctt 107
Query: 126 gtggtttgcatgatcgaggagccgcttcgatccctcgctgaccgctgtttggattgaagg 185
||||||||||||| | |||||||| || | ||| ||||||| || |||||||||||||
Sbjct: 108 gtggtttgcatgaccaaggagccgaatcaactccttgctgaccactctttggattgaagg 167
Query: 186 gagctctgcatcttgatc 203
||||||||||||||||||
Sbjct: 168 gagctctgcatcttgatc 185
>RF00638;MIR159;EU955086.1/295-527 4577:Zea mays
Length = 233
Score = 97.6 bits (49), Expect = 6e-20
Identities = 79/89 (88%)
Strand = Plus / Plus
Query: 115 gagataggcttgtggtttgcatgatcgaggagccgcttcgatccctcgctgaccgctgtt 174
|||||||||||||||||||||||| |||||||| || || |||| |||| ||||| ||
Sbjct: 143 gagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctggccgctctt 202
Query: 175 tggattgaagggagctctgcatcttgatc 203
||||||||||||||||||||||| |||||
Sbjct: 203 tggattgaagggagctctgcatcctgatc 231
Score = 81.8 bits (41), Expect = 4e-15
Identities = 73/81 (90%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 21 ggagctcctatcattccaatgaagggtc-taccggaagggtttgtgcagctgcttgttca 79
|||||||||||||||||||||||||||| ||||| ||||| || | |||||| |||||
Sbjct: 12 ggagctcctatcattccaatgaagggtcgtaccg-aagggccggttccgctgctcgttca 70
Query: 80 tggttcccactatcctatctc 100
|||||||||||||||||||||
Sbjct: 71 tggttcccactatcctatctc 91
>RF00638;MIR159;ABXC01001787.1/21430-21187 4558:Sorghum bicolor
(sorghum)
Length = 244
Score = 97.6 bits (49), Expect = 6e-20
Identities = 79/89 (88%)
Strand = Plus / Plus
Query: 115 gagataggcttgtggtttgcatgatcgaggagccgcttcgatccctcgctgaccgctgtt 174
|||||||||||||||||||||||| |||||||| || || |||| |||| ||||| ||
Sbjct: 154 gagataggcttgtggtttgcatgaccgaggagctgcaccgtccccttgctggccgctctt 213
Query: 175 tggattgaagggagctctgcatcttgatc 203
||||||||||||||||||||||| |||||
Sbjct: 214 tggattgaagggagctctgcatcctgatc 242
Score = 58.0 bits (29), Expect = 5e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 68 gctgcttgttcatggttcccactatcctatctc 100
|||||| ||||||||||||||||||||||||||
Sbjct: 58 gctgctcgttcatggttcccactatcctatctc 90
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 23 agctcctatcattccaatgaaggg 46
||||||||||||||||||||||||
Sbjct: 14 agctcctatcattccaatgaaggg 37
>RF00638;MIR159;EU947090.1/674-895 4577:Zea mays
Length = 222
Score = 93.7 bits (47), Expect = 9e-19
Identities = 78/87 (89%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 115 gagataggcttgtggtttgcatgatcgaggagccgcttcgatccct-cgctgaccgctgt 173
||||| |||||||||||||||||| |||||||| || ||| |||| || ||||||||||
Sbjct: 131 gagatgggcttgtggtttgcatgaccgaggagctgcctcgtccccttcgttgaccgctgt 190
Query: 174 ttggattgaagggagctctgcatcttg 200
||||| |||||||||||||||||||||
Sbjct: 191 ttggagtgaagggagctctgcatcttg 217
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 66 cagctgcttgttcatggttcccactatcctatctc 100
|||||||| |||||||||||||||| ||| |||||
Sbjct: 56 cagctgctcgttcatggttcccactgtcccatctc 90
>RF00638;MIR159;AP008207.1/17678032-17678305 39947:Oryza sativa
Japonica Group
Length = 274
Score = 54.0 bits (27), Expect = 8e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 173 tttggattgaagggagctctgcatctt 199
|||||||||||||||||||||||||||
Sbjct: 242 tttggattgaagggagctctgcatctt 268
>RF00638;MIR159;ABXC01001787.1/15180-14953 4558:Sorghum bicolor
(sorghum)
Length = 228
Score = 52.0 bits (26), Expect = 3e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 67 agctgcttgttcatggttcccactatcctatctc 100
||||||| |||||||||||||||||||| |||||
Sbjct: 57 agctgctcgttcatggttcccactatcccatctc 90
Score = 52.0 bits (26), Expect = 3e-06
Identities = 72/86 (83%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 115 gagataggcttgtggtttgcatgatcgaggagccgcttcgatccctcgct-gaccgctgt 173
||||| ||| |||||||||||||| |||||||| || ||| |||| | |||||||
Sbjct: 137 gagatgggcctgtggtttgcatgaccgaggagctgcatcgtcccctttgtcgaccgctcg 196
Query: 174 ttggattgaagggagctctgcatctt 199
||||||||||||||||||||| ||||
Sbjct: 197 ttggattgaagggagctctgcgtctt 222
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 171 tgtttggattgaagggagctctgcatct 198
|||||||||||||||||||||| |||||
Sbjct: 160 tgtttggattgaagggagctctacatct 187
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 173 tttggattgaagggagctctgcatctt 199
|||||||||||||||||||| ||||||
Sbjct: 172 tttggattgaagggagctctacatctt 198
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 171 tgtttggattgaagggagctct 192
||||||||||||||||||||||
Sbjct: 160 tgtttggattgaagggagctct 181
>RF00638;MIR159;AC034107.5/26716-26923 3702:Arabidopsis thaliana
(thale cress)
Length = 208
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 173 tttggattgaagggagctctgcatct 198
|||||||||||||||||||| |||||
Sbjct: 176 tttggattgaagggagctcttcatct 201
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 171 tgtttggattgaagggagctct 192
||||||||||||||||||||||
Sbjct: 160 tgtttggattgaagggagctct 181
