miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AJ507395.1/7785-7899 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 115
Score = 65.9 bits (33), Expect = 1e-10
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 10 gtacttcctccgtcccaaaataagtaactcaaaaatgactc 50
||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 112 gtactccctccgtcccaaaataagtgactcaaaaatgactc 72
Score = 58.0 bits (29), Expect = 2e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 16 cctccgtcccaaaataagtaactcaaaaatgactcaa 52
|||| |||||||||||||| |||||||||||||||||
Sbjct: 10 cctctgtcccaaaataagtgactcaaaaatgactcaa 46
>RF00906;MIR1122;FJ491378.1/4581-4466 4550:Secale cereale (rye)
Length = 116
Score = 60.0 bits (30), Expect = 6e-09
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 11 tacttcctccgtcccaaaataagtaactcaaaaatgactcaa 52
|||| ||||||||||||||||||| |||||||| ||||||||
Sbjct: 112 tactccctccgtcccaaaataagtgactcaaaagtgactcaa 71
Score = 52.0 bits (26), Expect = 1e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 11 tacttcctccgtcccaaaataagtaactcaaaaatgactcaa 52
|||| |||| |||||||||||||| |||||||||| ||||||
Sbjct: 5 tactccctctgtcccaaaataagtgactcaaaaatcactcaa 46
>RF00906;MIR1122;AF181455.1/3108-2994 4513:Hordeum vulgare
Length = 115
Score = 56.0 bits (28), Expect = 9e-08
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 9 agtacttcctccgtcccaaaataagtaactcaaaaatgactcaa 52
|||||| ||||||||||||||||||| ||| |||||||| ||||
Sbjct: 113 agtactccctccgtcccaaaataagtgactgaaaaatgagtcaa 70
>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
Length = 104
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 20 cgtcccaaaataagtaactcaaaaatgactcaa 52
||||||||||||||| ||||||||| |||||||
Sbjct: 13 cgtcccaaaataagtgactcaaaaacgactcaa 45
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 11 tacttcctccgtcccaaaataagtaactcaa 41
|||| ||||||||||||||||||| ||||||
Sbjct: 100 tactccctccgtcccaaaataagtgactcaa 70
>RF01058;MIR806;AP004279.1/119207-118967 39947:Oryza sativa
Japonica Group
Length = 241
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 tacttcctccgtcccaaaataagt 34
||||||||||||||||||||||||
Sbjct: 2 tacttcctccgtcccaaaataagt 25
>RF01058;MIR806;AAAA02032712.1/19270-19031 39946:Oryza sativa
Indica Group
Length = 240
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 gtacttcctccgtcccaaaataag 33
||||||||||||||||||||||||
Sbjct: 1 gtacttcctccgtcccaaaataag 24
>RF00906;MIR1122;AB183299.1/312-404 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 11 tacttcctccgtcccaaaataagt 34
||||||||||||||||||||||||
Sbjct: 89 tacttcctccgtcccaaaataagt 66
>RF00906;MIR1122;AY943294.1/62260-62364 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 10 gtacttcctccgtcccaaaataa 32
|||||||||||||||||||||||
Sbjct: 102 gtacttcctccgtcccaaaataa 80
>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
Length = 132
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 11 tacttcctccgtcccaaaataagtaactcaa 41
|||| ||||||||||||||||||| ||||||
Sbjct: 5 tactccctccgtcccaaaataagtgactcaa 35
>RF00906;MIR1122;EU282770.1/593-711 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 119
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 7 cgagtacttcctccgtcccaaaataa 32
|||||||| |||||||||||||||||
Sbjct: 119 cgagtactccctccgtcccaaaataa 94
>RF00906;MIR1122;AK249769.1/2180-2285 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 106
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 9 agtacttcctccgtcccaaaataagt 34
|||||||||| |||||||||||||||
Sbjct: 104 agtacttccttcgtcccaaaataagt 79
>RF00906;MIR1122;AP008209.1/34516197-34516103 39947:Oryza sativa
Japonica Group
Length = 95
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 gtacttcctccgtcccaaaata 31
||||||||||||||||||||||
Sbjct: 4 gtacttcctccgtcccaaaata 25
