miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AJ507395.1/7785-7899 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 115
Score = 73.8 bits (37), Expect = 4e-13
Identities = 40/41 (97%)
Strand = Plus / Minus
Query: 9 gtacttcctccgtcccaaaataagtgactcaaaaatgactc 49
||||| |||||||||||||||||||||||||||||||||||
Sbjct: 112 gtactccctccgtcccaaaataagtgactcaaaaatgactc 72
Score = 65.9 bits (33), Expect = 1e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 15 cctccgtcccaaaataagtgactcaaaaatgactcaa 51
|||| ||||||||||||||||||||||||||||||||
Sbjct: 10 cctctgtcccaaaataagtgactcaaaaatgactcaa 46
Score = 56.0 bits (28), Expect = 9e-08
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 57 gagtcatttttgagtcacttactttgagatggagggagta 96
||||||||||||||||||||| |||| || ||||||||||
Sbjct: 72 gagtcatttttgagtcacttattttgggacggagggagta 111
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 57 gagtcatttttgagtcacttactttg 82
||||||||||||||||||||| ||||
Sbjct: 44 gagtcatttttgagtcacttattttg 19
>RF00906;MIR1122;FJ491378.1/4581-4466 4550:Secale cereale (rye)
Length = 116
Score = 67.9 bits (34), Expect = 2e-11
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 10 tacttcctccgtcccaaaataagtgactcaaaaatgactcaa 51
|||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 112 tactccctccgtcccaaaataagtgactcaaaagtgactcaa 71
Score = 60.0 bits (30), Expect = 6e-09
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 10 tacttcctccgtcccaaaataagtgactcaaaaatgactcaa 51
|||| |||| ||||||||||||||||||||||||| ||||||
Sbjct: 5 tactccctctgtcccaaaataagtgactcaaaaatcactcaa 46
Score = 48.1 bits (24), Expect = 2e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 57 gagtcatttttgagtcacttactttgagatggagggagta 96
|||||| |||||||||||||| |||| || ||||||||||
Sbjct: 73 gagtcacttttgagtcacttattttgggacggagggagta 112
>RF00906;MIR1122;AF181455.1/3108-2994 4513:Hordeum vulgare
Length = 115
Score = 63.9 bits (32), Expect = 4e-10
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 8 agtacttcctccgtcccaaaataagtgactcaaaaatgactcaa 51
|||||| ||||||||||||||||||||||| |||||||| ||||
Sbjct: 113 agtactccctccgtcccaaaataagtgactgaaaaatgagtcaa 70
Score = 44.1 bits (22), Expect = 3e-04
Identities = 35/38 (92%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 9 gtacttcctccgtcccaaaataagtgactcaaaaatga 46
||||| |||||||||||||| || ||||||||||||||
Sbjct: 4 gtactccctccgtcccaaaa-aaatgactcaaaaatga 40
>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
Length = 104
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 19 cgtcccaaaataagtgactcaaaaatgactcaa 51
||||||||||||||||||||||||| |||||||
Sbjct: 13 cgtcccaaaataagtgactcaaaaacgactcaa 45
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 10 tacttcctccgtcccaaaataagtgactcaa 40
|||| ||||||||||||||||||||||||||
Sbjct: 100 tactccctccgtcccaaaataagtgactcaa 70
>RF00906;MIR1122;AB183299.1/312-404 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 10 tacttcctccgtcccaaaataagtgactcaa 40
||||||||||||||||||||||||| |||||
Sbjct: 89 tacttcctccgtcccaaaataagtgtctcaa 59
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 15 cctccgtcccaaaataagtgactcaa 40
|||||||||||||||||||| |||||
Sbjct: 10 cctccgtcccaaaataagtgtctcaa 35
>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
Length = 132
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 10 tacttcctccgtcccaaaataagtgactcaa 40
|||| ||||||||||||||||||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgactcaa 35
>RF01058;MIR806;AP004279.1/119207-118967 39947:Oryza sativa
Japonica Group
Length = 241
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 tacttcctccgtcccaaaataagtg 34
|||||||||||||||||||||||||
Sbjct: 2 tacttcctccgtcccaaaataagtg 26
>RF00906;MIR1122;AB239678.1/2131-2247 52163:Triticum monococcum
subsp. aegilopoides
Length = 117
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 8 agtacttcctccgtcccaaaataagtgactcaa 40
|||||| ||||||||||||| ||||||||||||
Sbjct: 115 agtactccctccgtcccaaattaagtgactcaa 83
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 10 tacttcctccgtcccaaaataagtgactcaa 40
|||| ||||||||||||| ||||||||||||
Sbjct: 5 tactccctccgtcccaaattaagtgactcaa 35
>RF00906;MIR1122;AF427791.1/40179-40064 4513:Hordeum vulgare
Length = 116
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 16 ctccgtcccaaaataagtgactcaaaaatgact 48
||||||| |||||||||||||||||||| ||||
Sbjct: 11 ctccgtctcaaaataagtgactcaaaaacgact 43
Score = 46.1 bits (23), Expect = 9e-05
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 58 agtcatttttgagtcacttactttgagatggagggagta 96
|||| ||||||||||||||| ||||||| |||| |||||
Sbjct: 43 agtcgtttttgagtcacttattttgagacggagagagta 5
>RF00906;MIR1122;FJ477093.1/40908-41001 4513:Hordeum vulgare
Length = 94
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 8 agtacttcctccgtcccaaaataagtgactcaa 40
|||||| ||||||||||||| ||||||||||||
Sbjct: 92 agtactccctccgtcccaaattaagtgactcaa 60
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 10 tacttcctccgtcccaaaataagtgactcaa 40
|||| |||| |||||||||||||||||||||
Sbjct: 5 tactccctctgtcccaaaataagtgactcaa 35
>RF01058;MIR806;AAAA02032712.1/19270-19031 39946:Oryza sativa
Indica Group
Length = 240
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 gtacttcctccgtcccaaaataag 32
||||||||||||||||||||||||
Sbjct: 1 gtacttcctccgtcccaaaataag 24
>RF00906;MIR1122;AY943294.1/62260-62364 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 9 gtacttcctccgtcccaaaataagtgactcaa 40
||||||||||||||||||||||| || |||||
Sbjct: 102 gtacttcctccgtcccaaaataactgtctcaa 71
>RF00906;MIR1122;U29095.1/333-439 4565:Triticum aestivum (bread
wheat)
Length = 107
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 10 tacttcctccgtcccaaaataagtgactcaa 40
|||| |||||||||| |||||||||||||||
Sbjct: 103 tactccctccgtcccgaaataagtgactcaa 73
>RF00906;MIR1122;AJ400714.1/3663-3767 4565:Triticum aestivum (bread
wheat)
Length = 105
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 10 tacttcctccgtcccaaaataagtgactcaa 40
|||| |||||||||||||||||||| |||||
Sbjct: 101 tactccctccgtcccaaaataagtgtctcaa 71
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 7 gagtacttcctccgtcccaaaataagtgactcaa 40
||||||| | |||||||||||||||||| |||||
Sbjct: 2 gagtactccttccgtcccaaaataagtgtctcaa 35
>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum
(bread wheat)
Length = 104
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 10 tacttcctccgtcccaaaataagtgactcaa 40
|||| |||||||||||||||||||| |||||
Sbjct: 5 tactccctccgtcccaaaataagtgtctcaa 35
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 10 tacttcctccgtcccaaaataagtgactca 39
|||| |||||||||||||||||||| ||||
Sbjct: 100 tactccctccgtcccaaaataagtgtctca 71
>RF00906;MIR1122;AK249769.1/2180-2285 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 106
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 8 agtacttcctccgtcccaaaataagtg 34
|||||||||| ||||||||||||||||
Sbjct: 104 agtacttccttcgtcccaaaataagtg 78
>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 10 tacttcctccgtcccaaaataagtgactcaa 40
|||| |||||||||||||||||||| |||||
Sbjct: 5 tactccctccgtcccaaaataagtgtctcaa 35
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 10 tacttcctccgtcccaaaataagtgactcaa 40
|||| |||||||||||||||||||| |||||
Sbjct: 101 tactccctccgtcccaaaataagtgtctcaa 71
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 10 tacttcctccgtcccaaaataagtgactcaa 40
|||| |||||||||||||||||||| |||||
Sbjct: 5 tactccctccgtcccaaaataagtgtctcaa 35
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 10 tacttcctccgtcccaaaataagtgactcaa 40
|||| |||||||||||||||||||| |||||
Sbjct: 5 tactccctccgtcccaaaataagtgtctcaa 35
>RF01058;MIR806;AACV01004692.1/2655-2900 39947:Oryza sativa
Japonica Group
Length = 246
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 gtacttcctccgtcccaaaataagtg 34
||||| ||||||||||||||||||||
Sbjct: 1 gtactccctccgtcccaaaataagtg 26
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 9 gtacttcctccgtcccaaaataagtg 34
||||| ||||||||||||||||||||
Sbjct: 246 gtactacctccgtcccaaaataagtg 221
>RF01058;MIR806;AAAA02004537.1/25464-25706 39946:Oryza sativa Indica
Group
Length = 243
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 9 gtacttcctccgtcccaaaataagtg 34
||||| ||||||||||||||||||||
Sbjct: 243 gtactacctccgtcccaaaataagtg 218
>RF01058;MIR806;AP004672.3/126730-126486 39947:Oryza sativa Japonica
Group
Length = 245
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 9 gtacttcctccgtcccaaaataagtg 34
||||| ||||||||||||||||||||
Sbjct: 245 gtactacctccgtcccaaaataagtg 220
>RF00906;MIR1122;FJ752586.1/56000-56102 161934:Beta vulgaris
Length = 103
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 10 tacttcctccgtcccaaaataagtga 35
|||||||||||| |||||||||||||
Sbjct: 99 tacttcctccgttccaaaataagtga 74
>RF00906;MIR1122;DQ901436.1/1229-1333 4565:Triticum aestivum
(bread wheat)
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 15 cctccgtcccaaaataagtgactcaa 40
|||||||||||||||||||| |||||
Sbjct: 10 cctccgtcccaaaataagtgtctcaa 35
>RF00906;MIR1122;EU282770.1/593-711 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 119
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 6 cgagtacttcctccgtcccaaaataa 31
|||||||| |||||||||||||||||
Sbjct: 119 cgagtactccctccgtcccaaaataa 94
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 9 gtacttcctccgtcccaaaataagtg 34
||||| ||||||||||||||||||||
Sbjct: 102 gtactccctccgtcccaaaataagtg 77
>RF00906;MIR1122;AP008209.1/34516197-34516103 39947:Oryza sativa
Japonica Group
Length = 95
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 gtacttcctccgtcccaaaata 30
||||||||||||||||||||||
Sbjct: 4 gtacttcctccgtcccaaaata 25
