miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY133251.1/901-1005 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 83.8 bits (42), Expect = 5e-16
Identities = 76/86 (88%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 14 atacttcctccgtcccaaaataattgtctagaggcttagtacaattttatactaaagcta 73
||||| ||||||| ||||||||| ||||| ||| | |||||||||||| ||||| |||||
Sbjct: 4 atactccctccgttccaaaataagtgtcttgag-cgtagtacaattttgtactagagcta 62
Query: 74 gtacaaggttgagacatttattttgg 99
|||||| ||||||||| |||||||||
Sbjct: 63 gtacaaagttgagacagttattttgg 88
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 83.8 bits (42), Expect = 5e-16
Identities = 76/86 (88%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 14 atacttcctccgtcccaaaataattgtctagaggcttagtacaattttatactaaagcta 73
||||| ||||||||||||||||| ||||| || |||||||||| ||| |||||||| ||
Sbjct: 4 atactccctccgtcccaaaataagtgtctcaag-cttagtacaactttgtactaaagtta 62
Query: 74 gtacaaggttgagacatttattttgg 99
||||| |||||||||||||||||||
Sbjct: 63 atacaaagttgagacatttattttgg 88
>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
subsp. dicoccoides
Length = 105
Score = 77.8 bits (39), Expect = 3e-14
Identities = 76/87 (87%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 13 aatacttcctccgtcccaaaataattgtctagaggcttagtacaattttatactaaagct 72
|||||| ||||||||||||||||| ||||| || |||||||| || ||| ||||| || |
Sbjct: 3 aatactccctccgtcccaaaataagtgtcttga-gcttagtaaaaatttgtactagagat 61
Query: 73 agtacaaggttgagacatttattttgg 99
||||||| ||||||||| |||||||||
Sbjct: 62 agtacaaagttgagacacttattttgg 88
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 75.8 bits (38), Expect = 1e-13
Identities = 75/86 (87%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 14 atacttcctccgtcccaaaataattgtctagaggcttagtacaattttatactaaagcta 73
||||| ||||||||||||||||| ||||| || |||||||||| || |||||||| ||
Sbjct: 4 atactccctccgtcccaaaataagtgtctcaag-cttagtacaaccttgtactaaagtta 62
Query: 74 gtacaaggttgagacatttattttgg 99
||||| |||||||||||||||||||
Sbjct: 63 atacaaagttgagacatttattttgg 88
>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 73.8 bits (37), Expect = 5e-13
Identities = 74/85 (87%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 15 tacttcctccgtcccaaaataattgtctagaggcttagtacaattttatactaaagctag 74
|||| ||||||||||||||||| ||||| || |||||| |||||| ||||| ||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtctcaag-cttagtgtaattttgtactacagctag 63
Query: 75 tacaaggttgagacatttattttgg 99
||||| ||||||||| |||||||||
Sbjct: 64 tacaaagttgagacacttattttgg 88
>RF00906;MIR1122;AF521177.1/206122-206018 4513:Hordeum vulgare
Length = 105
Score = 71.9 bits (36), Expect = 2e-12
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 47 gcttagtacaattttatactaaagctagtacaaggttgagacatttattttg 98
||||||||||| ||| ||||| ||||||||||| ||||||||||||||||||
Sbjct: 36 gcttagtacaactttgtactagagctagtacaaagttgagacatttattttg 87
>RF00906;MIR1122;AJ234485.1/114-218 4513:Hordeum vulgare
Length = 105
Score = 71.9 bits (36), Expect = 2e-12
Identities = 73/84 (86%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 15 tacttcctccgtcccaaaataattgtctagaggcttagtacaattttatactaaagctag 74
|||| |||||||| |||||||| ||||| | |||||||||||||| ||||| ||||||
Sbjct: 5 tactccctccgtctcaaaataagtgtcttaat-cttagtacaattttgtactagagctag 63
Query: 75 tacaaggttgagacatttattttg 98
||||| ||||||||| ||||||||
Sbjct: 64 tacaatgttgagacagttattttg 87
>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum
(bread wheat)
Length = 104
Score = 67.9 bits (34), Expect = 3e-11
Identities = 75/86 (87%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 14 atacttcctccgtcccaaaataattgtctagaggcttagtacaattttatactaaagcta 73
||||| ||||||||||||||||| ||||| | |||||||||||||||||||| || ||
Sbjct: 4 atactccctccgtcccaaaataagtgtctcaac-cttagtacaattttatactagagtta 62
Query: 74 gtacaaggttgagacatttattttgg 99
|||||| | ||||||| |||||||||
Sbjct: 63 gtacaaag-tgagacacttattttgg 87
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 13 aatacttcctccgtcccaaaataattgtct 42
|||||| ||||||||||||||||| |||||
Sbjct: 102 aatactccctccgtcccaaaataagtgtct 73
>RF00906;MIR1122;AK249748.1/2677-2573 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 67.9 bits (34), Expect = 3e-11
Identities = 77/90 (85%), Gaps = 1/90 (1%)
Strand = Plus / Minus
Query: 15 tacttcctccgtcccaaaataattgtctagaggcttagtacaattttatactaaagctag 74
|||| |||||||| |||||||| ||||| | ||||||| || |||||| |||||||||
Sbjct: 101 tactccctccgtcgcaaaataaatgtcttaaa-cttagtataaatttatagtaaagctag 43
Query: 75 tacaaggttgagacatttattttggaacag 104
||||| ||| ||||| ||||||||||||||
Sbjct: 42 tacaaagttaagacagttattttggaacag 13
>RF00906;MIR1122;DQ445236.1/13423-13319 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 67.9 bits (34), Expect = 3e-11
Identities = 77/90 (85%), Gaps = 1/90 (1%)
Strand = Plus / Minus
Query: 13 aatacttcctccgtcccaaaataattgtctagaggcttagtacaattttatactaaagct 72
|||||| ||||||| ||||||||| | ||| || |||||||||| ||| ||||| ||||
Sbjct: 103 aatactccctccgttccaaaataactatctcaag-cttagtacaactttgtactagagct 45
Query: 73 agtacaaggttgagacatttattttggaac 102
||||||| |||||||| ||||||||||||
Sbjct: 44 agtacaaatttgagacacttattttggaac 15
>RF00906;MIR1122;DQ995510.1/1615-1718 4513:Hordeum vulgare
Length = 104
Score = 65.9 bits (33), Expect = 1e-10
Identities = 75/88 (85%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 12 taatacttcctccgtcccaaaataattgtctagaggcttagtacaattttatactaaagc 71
||||||| |||||||| |||||||| ||||| | ||| |||||| ||| ||||| |||
Sbjct: 2 taatactccctccgtctcaaaataactgtctcaa--ctttgtacaactttgtactagagc 59
Query: 72 tagtacaaggttgagacatttattttgg 99
|||||||| ||||||||| |||||||||
Sbjct: 60 tagtacaaagttgagacagttattttgg 87
>RF00906;MIR1122;EU593539.1/914-1018 4513:Hordeum vulgare
Length = 105
Score = 65.9 bits (33), Expect = 1e-10
Identities = 73/85 (85%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 15 tacttcctccgtcccaaaataattgtctagaggcttagtacaattttatactaaagctag 74
|||| ||||||||||||||||| ||||| | |||||||| || ||||||||| | ||||
Sbjct: 5 tactccctccgtcccaaaataactgtct-taagcttagtataaatttatactagatctag 63
Query: 75 tacaaggttgagacatttattttgg 99
|| || ||||||||| |||||||||
Sbjct: 64 tataaagttgagacagttattttgg 88
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 13 aatacttcctccgtcccaaaataattgtct 42
|||||| ||||||||||||||||| |||||
Sbjct: 103 aatactccctccgtcccaaaataactgtct 74
>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
Length = 112
Score = 65.9 bits (33), Expect = 1e-10
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 47 gcttagtacaattttatactaaagctagtacaaggttgagacatttattttgg 99
||||||||||| ||| |||||||| |||||||| ||||||||| |||||||||
Sbjct: 43 gcttagtacaactttgtactaaagttagtacaaagttgagacacttattttgg 95
>RF00906;MIR1122;AK252392.1/1279-1175 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 63.9 bits (32), Expect = 5e-10
Identities = 69/80 (86%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 20 cctccgtcccaaaataattgtctagaggcttagtacaattttatactaaagctagtacaa 79
||||||||||||||||| ||||| || |||||||||||||||||| |||||||||||
Sbjct: 10 cctccgtcccaaaataagtgtcttaag-cttagtacaattttatacatgagctagtacaa 68
Query: 80 ggttgagacatttattttgg 99
||| ||||| ||||||||
Sbjct: 69 agttaagacagatattttgg 88
>RF00906;MIR1122;X83518.1/7301-7197 4513:Hordeum vulgare
Length = 105
Score = 63.9 bits (32), Expect = 5e-10
Identities = 75/88 (85%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 14 atacttcctccgtcccaaaataattgtctagaggcttagtacaattttatactaaagcta 73
||||| ||||| || |||||||| ||||| || |||||||||| ||| || || |||||
Sbjct: 4 atactccctccatctcaaaataactgtctcaag-cttagtacaactttgtagtagagcta 62
Query: 74 gtacaaggttgagacatttattttggaa 101
|||||| ||||||||| |||||||||||
Sbjct: 63 gtacaaagttgagacacttattttggaa 90
>RF00906;MIR1122;AF474373.1/50497-50394 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 104
Score = 61.9 bits (31), Expect = 2e-09
Identities = 68/79 (86%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 21 ctccgtcccaaaataattgtctagaggcttagtacaattttatactaaagctagtacaag 80
|||||||||||||||| ||||| | || |||||||| ||| ||||| | |||||||||
Sbjct: 11 ctccgtcccaaaataactgtct-caagcctagtacaactttgtactagaactagtacaaa 69
Query: 81 gttgagacatttattttgg 99
||||||||| |||||||||
Sbjct: 70 gttgagacacttattttgg 88
>RF00906;MIR1122;DQ901436.1/1229-1333 4565:Triticum aestivum
(bread wheat)
Length = 105
Score = 60.0 bits (30), Expect = 7e-09
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 50 tagtacaattttatactaaagctagtacaaggttgagacatttattttgg 99
|||||||| ||| || |||||||||||||| ||||||||| |||||||||
Sbjct: 67 tagtacaactttgtattaaagctagtacaaagttgagacacttattttgg 18
>RF00906;MIR1122;DQ175992.1/50-154 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 60.0 bits (30), Expect = 7e-09
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 47 gcttagtacaattttatactaaagctagtacaaggttgagacatttattttggaacaggg 106
|||||||| |||||||||||| |||||| |||| ||| ||||| ||||||||| || | |
Sbjct: 36 gcttagtataattttatactagagctagaacaaagttaagacaattattttgggacggag 95
Query: 107 gaagtagaaa 116
| ||||||||
Sbjct: 96 ggagtagaaa 105
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 15 tacttcctccgtcccaaaataattgtct 42
|||| |||||||||||||||||||||||
Sbjct: 101 tactccctccgtcccaaaataattgtct 74
>RF00906;MIR1122;AK249560.1/988-1092 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 58.0 bits (29), Expect = 3e-08
Identities = 72/85 (84%), Gaps = 1/85 (1%)
Strand = Plus / Minus
Query: 15 tacttcctccgtcccaaaataattgtctagaggcttagtacaattttatactaaagctag 74
|||| ||||||||||||||||| ||||| | |||| ||||| ||| ||||| ||||||
Sbjct: 101 tactccctccgtcccaaaataactgtct-caaacttaatacaagtttgtactatagctag 43
Query: 75 tacaaggttgagacatttattttgg 99
|| || ||||||||| |||||||||
Sbjct: 42 tataaagttgagacacttattttgg 18
>RF00906;MIR1122;DQ445238.1/5626-5730 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 58.0 bits (29), Expect = 3e-08
Identities = 72/85 (84%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 15 tacttcctccgtcccaaaataattgtctagaggcttagtacaattttatactaaagctag 74
|||| ||||||||||||||||| ||||| | |||||||| || |||||| || | ||||
Sbjct: 5 tactccctccgtcccaaaataactgtct-taagcttagtataaatttatattagatctag 63
Query: 75 tacaaggttgagacatttattttgg 99
|| || ||||||||| |||||||||
Sbjct: 64 tataaagttgagacagttattttgg 88
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 13 aatacttcctccgtcccaaaataattgtct 42
|||||| ||||||||||||||||| |||||
Sbjct: 103 aatactccctccgtcccaaaataactgtct 74
>RF00906;MIR1122;AJ249141.1/1014-910 4513:Hordeum vulgare
Length = 105
Score = 56.0 bits (28), Expect = 1e-07
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 47 gcttagtacaattttatactaaagctagtacaaggttgagacatttattttg 98
||||||||||| ||| ||||| ||||| ||||| ||||||||| ||||||||
Sbjct: 36 gcttagtacaactttgtactagagctaatacaaagttgagacagttattttg 87
>RF00906;MIR1122;AB183299.1/312-404 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 52.0 bits (26), Expect = 2e-06
Identities = 50/57 (87%), Gaps = 2/57 (3%)
Strand = Plus / Minus
Query: 14 atacttcctccgtcccaaaataattgtctagaggcttagtacaattttatactaaag 70
||||||||||||||||||||||| ||||| | |||||||||| |||||||||||
Sbjct: 90 atacttcctccgtcccaaaataagtgtctcaa--cttagtacaaagttatactaaag 36
>RF00906;MIR1122;DQ537335.1/8332-8425 4565:Triticum aestivum (bread
wheat)
Length = 94
Score = 48.1 bits (24), Expect = 3e-05
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 59 tttatactaaagctagtacaaggttgagacatttattttggaac 102
|||| ||||||| |||||||| |||||| ||| |||||||||||
Sbjct: 58 tttacactaaagttagtacaaagttgagtcatctattttggaac 15
>RF00906;MIR1122;AY943294.1/62260-62364 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 15 tacttcctccgtcccaaaataattgtct 42
|||||||||||||||||||||| |||||
Sbjct: 101 tacttcctccgtcccaaaataactgtct 74
>RF01058;MIR806;AP004279.1/119207-118967 39947:Oryza sativa
Japonica Group
Length = 241
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 atacttcctccgtcccaaaataa 36
|||||||||||||||||||||||
Sbjct: 1 atacttcctccgtcccaaaataa 23
>RF00906;MIR1122;DQ537336.1/120340-120474 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 11 ataatacttcctccgtcccaaaataattgtc 41
|||||||| ||||||||| ||||||||||||
Sbjct: 135 ataatactccctccgtccaaaaataattgtc 105
>RF00906;MIR1122;AF525764.1/1593-1489 200361:Aegilops tauschii
subsp. strangulata
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 12 taatacttcctccgtcccaaaataattgtct 42
||||||| ||| |||||||||||||||||||
Sbjct: 2 taatactccctacgtcccaaaataattgtct 32
>RF00906;MIR1122;AAAA02005583.1/44128-44034 39946:Oryza sativa
Indica Group
Length = 95
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 13 aatacttcctccgtcccaaaata 35
|||||||||||||||||||||||
Sbjct: 3 aatacttcctccgtcccaaaata 25
>RF00906;MIR1122;AP008216.1/2906565-2906717 39947:Oryza sativa
Japonica Group
Length = 153
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 13 aatacttcctccgtcccaaaata 35
|||||||||||||||||||||||
Sbjct: 151 aatacttcctccgtcccaaaata 129
>RF01058;MIR806;AAAA02032712.1/19270-19031 39946:Oryza sativa
Indica Group
Length = 240
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tacttcctccgtcccaaaataa 36
||||||||||||||||||||||
Sbjct: 2 tacttcctccgtcccaaaataa 23
>RF00906;MIR1122;AJ400714.1/3663-3767 4565:Triticum aestivum (bread
wheat)
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 71/86 (82%), Gaps = 1/86 (1%)
Strand = Plus / Minus
Query: 14 atacttcctccgtcccaaaataattgtctagaggcttagtacaattttatactaaagcta 73
||||| ||||||||||||||||| ||||| | |||||||||| ||| ||||| || ||
Sbjct: 102 atactccctccgtcccaaaataagtgtct-caaccttagtacaactttgtactagagtta 44
Query: 74 gtacaaggttgagacatttattttgg 99
|| || |||||||| |||||||||
Sbjct: 43 gtgtaaaattgagacacttattttgg 18
