miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;FJ491378.1/4581-4466 4550:Secale cereale (rye)
Length = 116
Score = 69.9 bits (35), Expect = 8e-12
Identities = 81/95 (85%), Gaps = 1/95 (1%)
Strand = Plus / Plus
Query: 10 atatactccttccgtcccaaaataagtgaatcaaaaatgact-tagtttttactaaattt 68
||||||||| || |||||||||||||||| |||||||| ||| | ||| |||||| |||
Sbjct: 2 atatactccctctgtcccaaaataagtgactcaaaaatcactcaactttgtactaacttt 61
Query: 69 agtataaagttaagtcacttttgattcacatattt 103
|||| ||||| |||||||||||| |||| |||||
Sbjct: 62 agtacgaagttgagtcacttttgagtcacttattt 96
Score = 60.0 bits (30), Expect = 8e-09
Identities = 79/94 (84%), Gaps = 1/94 (1%)
Strand = Plus / Minus
Query: 11 tatactccttccgtcccaaaataagtgaatcaaaaatgact-tagtttttactaaattta 69
|||||||| ||||||||||||||||||| |||||| ||||| | || ||||||| |||
Sbjct: 114 tatactccctccgtcccaaaataagtgactcaaaagtgactcaacttcgtactaaagtta 55
Query: 70 gtataaagttaagtcacttttgattcacatattt 103
||| |||||| ||| | |||||| |||| |||||
Sbjct: 54 gtacaaagttgagtgatttttgagtcacttattt 21
>RF00906;MIR1122;AJ507395.1/7785-7899 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 115
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 13 tactccttccgtcccaaaataagtgaatcaaaaatgact 51
|||||| ||||||||||||||||||| ||||||||||||
Sbjct: 111 tactccctccgtcccaaaataagtgactcaaaaatgact 73
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 23 gtcccaaaataagtgaatcaaaaatgact 51
|||||||||||||||| ||||||||||||
Sbjct: 15 gtcccaaaataagtgactcaaaaatgact 43
>RF00906;MIR1122;AF427791.1/40179-40064 4513:Hordeum vulgare
Length = 116
Score = 56.0 bits (28), Expect = 1e-07
Identities = 59/68 (86%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 10 atatactccttccgtcccaaaataagtgaatcaaaaatgactt-agtttttactaaattt 68
|||||||| |||||| |||||||||||| ||||||| ||||| | ||| ||||||| ||
Sbjct: 2 atatactctctccgtctcaaaataagtgactcaaaaacgacttaactttatactaaaatt 61
Query: 69 agtataaa 76
||||||||
Sbjct: 62 agtataaa 69
Score = 50.1 bits (25), Expect = 7e-06
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 59 tactaaatttagtataaagttaagtcacttttgattcacatattt 103
|||||| ||||||||||||||||||| |||||| |||| |||||
Sbjct: 65 tactaattttagtataaagttaagtcgtttttgagtcacttattt 21
>RF00906;MIR1122;AJ400714.1/3663-3767 4565:Triticum aestivum
(bread wheat)
Length = 105
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 tactccttccgtcccaaaataagtg 37
|||||||||||||||||||||||||
Sbjct: 5 tactccttccgtcccaaaataagtg 29
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 11 tatactccttccgtcccaaaataagtg 37
|||||||| ||||||||||||||||||
Sbjct: 103 tatactccctccgtcccaaaataagtg 77
>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
Length = 104
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 11 tatactccttccgtcccaaaataagtgaatcaa 43
|||||||| ||||||||||||||||||| ||||
Sbjct: 102 tatactccctccgtcccaaaataagtgactcaa 70
Score = 48.1 bits (24), Expect = 3e-05
Identities = 58/68 (85%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 22 cgtcccaaaataagtgaatcaaaaatgact-tagtttttactaaatttagtataaagtta 80
||||||||||||||||| ||||||| |||| | ||| ||||| ||||||| ||||||
Sbjct: 13 cgtcccaaaataagtgactcaaaaacgactcaactttgcactaactttagtacaaagttg 72
Query: 81 agtcactt 88
||||||||
Sbjct: 73 agtcactt 80
>RF00906;MIR1122;AF181455.1/3108-2994 4513:Hordeum vulgare
Length = 115
Score = 50.1 bits (25), Expect = 7e-06
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 13 tactccttccgtcccaaaataagtgaatcaaaaatga 49
|||||| ||||||||||||||||||| | ||||||||
Sbjct: 111 tactccctccgtcccaaaataagtgactgaaaaatga 75
Score = 44.1 bits (22), Expect = 5e-04
Identities = 90/110 (81%), Gaps = 2/110 (1%)
Strand = Plus / Plus
Query: 13 tactccttccgtcccaaaataagtgaatcaaaaatgacttagtttt-tactaaatttagt 71
|||||| |||||||||||| || ||| |||||||||| ||| |||| || |||| |||||
Sbjct: 5 tactccctccgtcccaaaa-aaatgactcaaaaatgatttaattttatagtaaagttagt 63
Query: 72 ataaagttaagtcacttttgattcacatatttcggggtcgagggagtact 121
||||||| | ||| |||| | |||| ||||| ||| |||||||||||
Sbjct: 64 gtaaagttgactcatttttcagtcacttattttgggacggagggagtact 113
>RF00906;MIR1122;U29095.1/333-439 4565:Triticum aestivum (bread
wheat)
Length = 107
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 atatactccttccgtcccaaaataagtg 37
||||||||| ||||||||||||||||||
Sbjct: 2 atatactccctccgtcccaaaataagtg 29
>RF00906;MIR1122;DQ267106.1/62901-62968 4572:Triticum urartu
Length = 68
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 atatactccttccgtcccaaaataagtg 37
||||||||| ||||||||||||||||||
Sbjct: 2 atatactccctccgtcccaaaataagtg 29
>RF00906;MIR1122;EF560592.1/17009-17118 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 110
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 atatactccttccgtcccaaaataagtg 37
||||||||||||||| ||||||||||||
Sbjct: 2 atatactccttccgttccaaaataagtg 29
>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 10 atatactccttccgtcccaaaataagtg 37
||||||||| ||||||||||||||||||
Sbjct: 104 atatactccctccgtcccaaaataagtg 77
>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
Length = 132
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 12 atactccttccgtcccaaaataagtgaatcaa 43
||||||| ||||||||||||||||||| ||||
Sbjct: 4 atactccctccgtcccaaaataagtgactcaa 35
>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum
(bread wheat)
Length = 104
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 11 tatactccttccgtcccaaaataagtg 37
|||||||| ||||||||||||||||||
Sbjct: 3 tatactccctccgtcccaaaataagtg 29
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 12 atactccttccgtcccaaaataagtg 37
||||||| ||||||||||||||||||
Sbjct: 101 atactccctccgtcccaaaataagtg 76
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 11 tatactccttccgtcccaaaataagtg 37
|||||||| ||||||||||||||||||
Sbjct: 3 tatactccctccgtcccaaaataagtg 29
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 11 tatactccttccgtcccaaaataagtg 37
|||||||| ||||||||||||||||||
Sbjct: 3 tatactccctccgtcccaaaataagtg 29
>RF00906;MIR1122;EU282251.1/1314-1209 52152:Elymus repens
Length = 106
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 11 tatactccttccgtcccaaaataagtg 37
|||||||| ||||||||||||||||||
Sbjct: 104 tatactccctccgtcccaaaataagtg 78
>RF00906;MIR1122;AAAA02018804.1/15100-15261 39946:Oryza sativa
Indica Group
Length = 162
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tatactccttccgtcccaaaata 33
|||||||||||||||||||||||
Sbjct: 3 tatactccttccgtcccaaaata 25
>RF01058;MIR806;AP008208.1/6823788-6823544 39947:Oryza sativa
Japonica Group
Length = 245
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 12 atactccttccgtcccaaaataagtg 37
||||||| ||||||||||||||||||
Sbjct: 245 atactccctccgtcccaaaataagtg 220
>RF01058;MIR806;AAAA02002634.1/48844-49087 39946:Oryza sativa
Indica Group
Length = 244
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 12 atactccttccgtcccaaaataagtg 37
||||||| ||||||||||||||||||
Sbjct: 1 atactccatccgtcccaaaataagtg 26
>RF01058;MIR806;AACV01025022.1/35011-35254 39947:Oryza sativa
Japonica Group
Length = 244
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 12 atactccttccgtcccaaaataagtg 37
||||||| ||||||||||||||||||
Sbjct: 1 atactccctccgtcccaaaataagtg 26
>RF01058;MIR806;AAAA02004537.1/25464-25706 39946:Oryza sativa
Indica Group
Length = 243
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 12 atactccttccgtcccaaaataagtg 37
||||||| ||||||||||||||||||
Sbjct: 1 atactccctccgtcccaaaataagtg 26
>RF01058;MIR806;AP008218.1/10634178-10633943 39947:Oryza sativa
Japonica Group
Length = 236
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 atactccttccgtcccaaaata 33
||||||||||||||||||||||
Sbjct: 1 atactccttccgtcccaaaata 22
>RF01058;MIR806;AAAA02009876.1/3121-2881 39946:Oryza sativa Indica
Group
Length = 241
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 12 atactccttccgtcccaaaataagtg 37
||||||| ||||||||||||||||||
Sbjct: 241 atactccctccgtcccaaaataagtg 216
>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
subsp. dicoccoides
Length = 105
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 12 atactccttccgtcccaaaataagtg 37
||||||| ||||||||||||||||||
Sbjct: 4 atactccctccgtcccaaaataagtg 29
>RF00906;MIR1122;AK249560.1/988-1092 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 12 atactccttccgtcccaaaataagtg 37
||||||| ||||||||||||||||||
Sbjct: 4 atactccatccgtcccaaaataagtg 29
>RF00906;MIR1122;FJ477093.1/40908-41001 4513:Hordeum vulgare
Length = 94
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 10 atatactccttccgtcccaaaataagtgaatcaa 43
||||||||| || |||||||||||||||| ||||
Sbjct: 2 atatactccctctgtcccaaaataagtgactcaa 35
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 59 tactaaatttagtataaagttaagtcactt 88
||||||| ||||||||||||| ||||||||
Sbjct: 41 tactaaagttagtataaagttgagtcactt 70
>RF00906;MIR1122;AAAA02000966.1/612-453 39946:Oryza sativa Indica
Group
Length = 160
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 tatatactccttccgtcccaaaataa 34
|||||||||| |||||||||||||||
Sbjct: 1 tatatactccctccgtcccaaaataa 26
>RF00906;MIR1122;AP008214.1/14410723-14410632 39947:Oryza sativa
Japonica Group
Length = 92
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 12 atactccttccgtcccaaaataagtg 37
||||||| ||||||||||||||||||
Sbjct: 4 atactccctccgtcccaaaataagtg 29
>RF00906;MIR1122;AACV01021941.1/12785-12674 39947:Oryza sativa
Japonica Group
Length = 112
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 atactccttccgtcccaaaata 33
||||||||||||||||||||||
Sbjct: 4 atactccttccgtcccaaaata 25
>RF00906;MIR1122;AAAA02024817.1/15052-15155 39946:Oryza sativa
Indica Group
Length = 104
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 13 tactccttccgtcccaaaataa 34
||||||||||||||||||||||
Sbjct: 100 tactccttccgtcccaaaataa 79
>RF00906;MIR1122;AACV01017125.1/17840-17954 39947:Oryza sativa
Japonica Group
Length = 115
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 tactccttccgtcccaaaataa 34
||||||||||||||||||||||
Sbjct: 5 tactccttccgtcccaaaataa 26
