miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;DQ154924.1/3536-3603 4571:Triticum turgidum
Length = 68
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 attttggaacggagggagtataa 33
|||||||||||||||||||||||
Sbjct: 45 attttggaacggagggagtataa 67
>RF00906;MIR1122;AY951945.1/37511-37377 4568:Triticum monococcum
Length = 135
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 72 atatactccctccgtccgaaattactt 98
||||||||||||||||||||| |||||
Sbjct: 134 atatactccctccgtccgaaaatactt 108
>RF00906;MIR1122;CT009586.1/21808-21942 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 72 atatactccctccgtccgaaattactt 98
||||||||||||||||||||| |||||
Sbjct: 134 atatactccctccgtccgaaaatactt 108
>RF00906;MIR1122;DQ890018.1/183-48 77009:Hordeum vulgare subsp.
spontaneum
Length = 136
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 11 attttggaacggagggagtataa 33
|||||||||||||||||||||||
Sbjct: 24 attttggaacggagggagtataa 2
>RF00906;MIR1122;AY133251.1/901-1005 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 11 attttggaacggagggagtataa 33
|||||||||||||||||||||||
Sbjct: 24 attttggaacggagggagtataa 2
>RF00906;MIR1122;DQ445236.1/13423-13319 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 11 attttggaacggagggagtataa 33
|||||||||||||||||||||||
Sbjct: 24 attttggaacggagggagtataa 2
>RF00906;MIR1122;AF548379.1/5968-6092 37682:Aegilops tauschii
Length = 125
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 73 tatactccctccgtccgaaatta 95
|||||||||||||||||||||||
Sbjct: 3 tatactccctccgtccgaaatta 25
>RF00906;MIR1122;CU302289.7/103800-103679 3880:Medicago truncatula
(barrel medic)
Length = 122
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 attttggaacggagggagtata 32
||||||||||||||||||||||
Sbjct: 99 attttggaacggagggagtata 120
>RF00906;MIR1122;AF427791.1/1754-1590 4513:Hordeum vulgare
Length = 165
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 attttggaacggagggagtata 32
||||||||||||||||||||||
Sbjct: 144 attttggaacggagggagtata 165
>RF00906;MIR1122;EU379326.1/1838-1972 269377:Poa palustris
Length = 135
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 tttggaacggagggagtataac 34
||||||||||||||||||||||
Sbjct: 114 tttggaacggagggagtataac 135
