miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY943294.1/62260-62364 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 107 bits (54), Expect = 3e-23
Identities = 69/74 (93%)
Strand = Plus / Minus
Query: 39 tgtctcaactttgtattagctgtagtataaaattgtattaagcttgagatacttattttg 98
||||||||||||||||||| | ||||| ||||||||||||||||| ||| ||||||||||
Sbjct: 78 tgtctcaactttgtattagatttagtacaaaattgtattaagcttaagacacttattttg 19
Query: 99 gaacggagggagta 112
||||||||||||||
Sbjct: 18 gaacggagggagta 5
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 6 tactccctccgtcccaaaataagtgtct 33
|||||||||||| |||||||||||||||
Sbjct: 5 tactccctccgttccaaaataagtgtct 32
>RF00906;MIR1122;DQ445236.1/13423-13319 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 97.6 bits (49), Expect = 3e-20
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 36 aagtgtctcaactttgtattagctgtagtataaaattgtattaagcttgagatacttatt 95
||||||||||| |||||| ||||| ||||| ||| ||||| ||||||||||||| |||||
Sbjct: 25 aagtgtctcaaatttgtactagctctagtacaaagttgtactaagcttgagatagttatt 84
Query: 96 ttggaacggagggagta 112
|||||||||||||||||
Sbjct: 85 ttggaacggagggagta 101
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 82 ttgagatacttattttggaacggagggagta 112
|||||| ||||||||||||||||||||||||
Sbjct: 35 ttgagacacttattttggaacggagggagta 5
>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 97.6 bits (49), Expect = 3e-20
Identities = 70/77 (90%)
Strand = Plus / Minus
Query: 36 aagtgtctcaactttgtattagctgtagtataaaattgtattaagcttgagatacttatt 95
|||||||||||||||||| ||||||||||| |||||| | ||||||||||| |||||||
Sbjct: 81 aagtgtctcaactttgtactagctgtagtacaaaattacactaagcttgagacacttatt 22
Query: 96 ttggaacggagggagta 112
|||| ||||||||||||
Sbjct: 21 ttgggacggagggagta 5
Score = 63.9 bits (32), Expect = 4e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 5 ttactccctccgtcccaaaataagtgtctcaa 36
||||||||||||||||||||||||||||||||
Sbjct: 4 ttactccctccgtcccaaaataagtgtctcaa 35
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 82 ttgagatacttattttggaacggagggagta 112
|||||| ||||||||||| ||||||||||||
Sbjct: 71 ttgagacacttattttgggacggagggagta 101
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 91.7 bits (46), Expect = 2e-18
Identities = 67/74 (90%)
Strand = Plus / Minus
Query: 39 tgtctcaactttgtattagctgtagtataaaattgtattaagcttgagatacttattttg 98
|||||||||||||||||| || ||||| ||| ||||| ||||||||||| ||||||||||
Sbjct: 78 tgtctcaactttgtattaactttagtacaaagttgtactaagcttgagacacttattttg 19
Query: 99 gaacggagggagta 112
| ||||||||||||
Sbjct: 18 ggacggagggagta 5
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 6 tactccctccgtcccaaaataagtgtctcaa 36
|||||||||||||||||||||||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtctcaa 35
>RF00906;MIR1122;AK249560.1/988-1092 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 83.8 bits (42), Expect = 5e-16
Identities = 69/78 (88%)
Strand = Plus / Plus
Query: 36 aagtgtctcaactttgtattagctgtagtataaaattgtattaagcttgagatacttatt 95
||||||||||||||| || ||||| ||||| ||| |||||||||| |||||| | |||||
Sbjct: 25 aagtgtctcaactttatactagctatagtacaaacttgtattaagtttgagacagttatt 84
Query: 96 ttggaacggagggagtac 113
|||| |||||||||||||
Sbjct: 85 ttgggacggagggagtac 102
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 6 tactccctccgtcccaaaataagtgtctcaaa 37
|||||||||||||||||||||| |||||||||
Sbjct: 101 tactccctccgtcccaaaataactgtctcaaa 70
>RF00906;MIR1122;AY133251.1/901-1005 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 83.8 bits (42), Expect = 5e-16
Identities = 66/74 (89%)
Strand = Plus / Minus
Query: 39 tgtctcaactttgtattagctgtagtataaaattgtattaagcttgagatacttattttg 98
||||||||||||||| ||||| ||||| ||||||||| || ||| ||| ||||||||||
Sbjct: 78 tgtctcaactttgtactagctctagtacaaaattgtactacgctcaagacacttattttg 19
Query: 99 gaacggagggagta 112
||||||||||||||
Sbjct: 18 gaacggagggagta 5
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 6 tactccctccgtcccaaaataagtgtct 33
|||||||||||| |||||||||||||||
Sbjct: 5 tactccctccgttccaaaataagtgtct 32
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 83.8 bits (42), Expect = 5e-16
Identities = 66/74 (89%)
Strand = Plus / Minus
Query: 39 tgtctcaactttgtattagctgtagtataaaattgtattaagcttgagatacttattttg 98
|||||||||||||||||| || ||||| || ||||| ||||||||||| ||||||||||
Sbjct: 78 tgtctcaactttgtattaactttagtacaaggttgtactaagcttgagacacttattttg 19
Query: 99 gaacggagggagta 112
| ||||||||||||
Sbjct: 18 ggacggagggagta 5
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 6 tactccctccgtcccaaaataagtgtctcaa 36
|||||||||||||||||||||||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtctcaa 35
>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum (bread
wheat)
Length = 104
Score = 81.8 bits (41), Expect = 2e-15
Identities = 69/77 (89%), Gaps = 1/77 (1%)
Strand = Plus / Minus
Query: 36 aagtgtctcaactttgtattagctgtagtataaaattgtattaagcttgagatacttatt 95
|||||||||| ||||||| || || ||||||||||||||| |||| |||||| |||||||
Sbjct: 80 aagtgtctca-ctttgtactaactctagtataaaattgtactaaggttgagacacttatt 22
Query: 96 ttggaacggagggagta 112
|||| ||||||||||||
Sbjct: 21 ttgggacggagggagta 5
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 6 tactccctccgtcccaaaataagtgtctcaa 36
|||||||||||||||||||||||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtctcaa 35
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 83 tgagatacttattttggaacggagggagta 112
||||| ||||||||||| ||||||||||||
Sbjct: 71 tgagacacttattttgggacggagggagta 100
>RF00906;MIR1122;AJ234485.1/114-218 4513:Hordeum vulgare
Length = 105
Score = 73.8 bits (37), Expect = 4e-13
Identities = 67/77 (87%)
Strand = Plus / Minus
Query: 39 tgtctcaactttgtattagctgtagtataaaattgtattaagcttgagatacttattttg 98
||||||||| ||||| ||||| ||||| ||||||||| |||| || ||| ||||||||||
Sbjct: 78 tgtctcaacattgtactagctctagtacaaaattgtactaagattaagacacttattttg 19
Query: 99 gaacggagggagtacta 115
|||||||||||||||
Sbjct: 18 agacggagggagtacta 2
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 6 tactccctccgtcccaaaataagtgtct 33
||||||||||||| ||||||||||||||
Sbjct: 5 tactccctccgtctcaaaataagtgtct 32
>RF00906;MIR1122;AJ249141.1/1014-910 4513:Hordeum vulgare
Length = 105
Score = 69.9 bits (35), Expect = 7e-12
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 39 tgtctcaactttgtattagctgtagtataaaattgtattaagcttgagatacttatttt 97
||||||||||||||||||||| ||||| ||| ||||| ||||||| ||| |||||||||
Sbjct: 78 tgtctcaactttgtattagctctagtacaaagttgtactaagcttaagacacttatttt 20
>RF00906;MIR1122;EU282771.1/632-528 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 69.9 bits (35), Expect = 7e-12
Identities = 68/79 (86%)
Strand = Plus / Minus
Query: 36 aagtgtctcaactttgtattagctgtagtataaaattgtattaagcttgagatacttatt 95
|||| |||||||||| | ||||| ||||||||| ||||| |||| |||||| | |||||
Sbjct: 81 aagtatctcaactttacactagctctagtataaagttgtactaagtttgagaaagttatt 22
Query: 96 ttggaacggagggagtact 114
|||| ||||||||||||||
Sbjct: 21 ttgggacggagggagtact 3
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 6 tactccctccgtcccaaaataagtgtctcaaa 37
|||||||||||||||||||||| | |||||||
Sbjct: 5 tactccctccgtcccaaaataactttctcaaa 36
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 82 ttgagatacttattttggaacggagggagta 112
||||||||||||||||| ||||||||||||
Sbjct: 71 ttgagatacttattttgagacggagggagta 101
>RF00906;MIR1122;AK252392.1/1279-1175 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 67.9 bits (34), Expect = 3e-11
Identities = 61/70 (87%)
Strand = Plus / Minus
Query: 39 tgtctcaactttgtattagctgtagtataaaattgtattaagcttgagatacttattttg 98
||||| ||||||||| ||||| ||||||||||||| ||||||| ||| ||||||||||
Sbjct: 78 tgtcttaactttgtactagctcatgtataaaattgtactaagcttaagacacttattttg 19
Query: 99 gaacggaggg 108
| ||||||||
Sbjct: 18 ggacggaggg 9
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 ccctccgtcccaaaataagtgtct 33
||||||||||||||||||||||||
Sbjct: 9 ccctccgtcccaaaataagtgtct 32
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 67.9 bits (34), Expect = 3e-11
Identities = 67/78 (85%)
Strand = Plus / Minus
Query: 36 aagtgtctcaactttgtattagctgtagtataaaattgtattaagcttgagatacttatt 95
|||||||| ||||||||| || || ||||| ||| ||||| || |||||||| |||||||
Sbjct: 81 aagtgtcttaactttgtactaactttagtacaaagttgtactaggcttgagacacttatt 22
Query: 96 ttggaacggagggagtac 113
||| |||||||||||||
Sbjct: 21 ttgagacggagggagtac 4
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 6 tactccctccgtcccaaaataagtgtctcaa 36
||||||||||||| |||||||||||||||||
Sbjct: 5 tactccctccgtctcaaaataagtgtctcaa 35
>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
subsp. dicoccoides
Length = 105
Score = 65.9 bits (33), Expect = 1e-10
Identities = 66/77 (85%)
Strand = Plus / Minus
Query: 36 aagtgtctcaactttgtattagctgtagtataaaattgtattaagcttgagatacttatt 95
|||||||||||||||||| || || ||||| ||| || || |||||| ||| |||||||
Sbjct: 81 aagtgtctcaactttgtactatctctagtacaaatttttactaagctcaagacacttatt 22
Query: 96 ttggaacggagggagta 112
|||| ||||||||||||
Sbjct: 21 ttgggacggagggagta 5
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 6 tactccctccgtcccaaaataagtgtct 33
||||||||||||||||||||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtct 32
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 6 tactccctccgtcccaaaataagtgtctcaa 36
|||||||||| ||||||||||||||||||||
Sbjct: 101 tactccctccatcccaaaataagtgtctcaa 71
>RF00906;MIR1122;AY663392.1/117099-117203 4565:Triticum aestivum
(bread wheat)
Length = 105
Score = 65.9 bits (33), Expect = 1e-10
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 48 tttgtattagctgtagtataaaattgtattaagcttgagatacttattttggaacggagg 107
|||||||||||| ||||||||| || || |||| |||||| ||||||||| ||||||| |
Sbjct: 69 tttgtattagctttagtataaagttatactaagattgagacacttattttagaacggaag 10
Query: 108 gagta 112
|||||
Sbjct: 9 gagta 5
>RF00906;MIR1122;AF474373.1/50497-50394 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 104
Score = 65.9 bits (33), Expect = 1e-10
Identities = 66/77 (85%)
Strand = Plus / Minus
Query: 36 aagtgtctcaactttgtattagctgtagtataaaattgtattaagcttgagatacttatt 95
|||||||||||||||||| ||| | ||||| ||| ||||| || |||||||| | |||||
Sbjct: 81 aagtgtctcaactttgtactagttctagtacaaagttgtactaggcttgagacagttatt 22
Query: 96 ttggaacggagggagta 112
|||| |||||| |||||
Sbjct: 21 ttgggacggagtgagta 5
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 6 tactccctccgtcccaaaataagtgtctcaa 36
||||| |||||||||||||||| ||||||||
Sbjct: 5 tactcactccgtcccaaaataactgtctcaa 35
Score = 46.1 bits (23), Expect = 1e-04
Identities = 30/31 (96%), Gaps = 1/31 (3%)
Strand = Plus / Minus
Query: 6 tactccctccgtcccaaaataagtgtctcaa 36
|||||||||| ||||||||||||||||||||
Sbjct: 100 tactccctcc-tcccaaaataagtgtctcaa 71
>RF00906;MIR1122;X83518.1/7301-7197 4513:Hordeum vulgare
Length = 105
Score = 65.9 bits (33), Expect = 1e-10
Identities = 66/77 (85%)
Strand = Plus / Minus
Query: 36 aagtgtctcaactttgtattagctgtagtataaaattgtattaagcttgagatacttatt 95
|||||||||||||||||| ||||| || || ||| ||||| ||||||||||| | |||||
Sbjct: 81 aagtgtctcaactttgtactagctctactacaaagttgtactaagcttgagacagttatt 22
Query: 96 ttggaacggagggagta 112
||| | ||||||||||
Sbjct: 21 ttgagatggagggagta 5
>RF00906;MIR1122;EU282768.1/632-528 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 63.9 bits (32), Expect = 4e-10
Identities = 53/60 (88%)
Strand = Plus / Minus
Query: 55 tagctgtagtataaaattgtattaagcttgagatacttattttggaacggagggagtact 114
||||| ||||||||| ||||| |||| |||||| | ||||||||| ||||||||||||||
Sbjct: 62 tagctctagtataaagttgtactaagtttgagaaagttattttgggacggagggagtact 3
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 6 tactccctccgtcccaaaataagtgtctcaaa 37
|||||||||||||||||||||| | |||||||
Sbjct: 5 tactccctccgtcccaaaataactttctcaaa 36
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 6 tactccctccgtcccaaaataagtgtctca 35
||||||||||||| |||||||||| |||||
Sbjct: 101 tactccctccgtctcaaaataagtatctca 72
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 83 tgagatacttattttggaacggagggagta 112
|||||||||||||||| ||||||||||||
Sbjct: 72 tgagatacttattttgagacggagggagta 101
>RF00906;MIR1122;AJ400714.1/3663-3767 4565:Triticum aestivum (bread
wheat)
Length = 105
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 6 tactccctccgtcccaaaataagtgtctcaa 36
|||||||||||||||||||||||||||||||
Sbjct: 101 tactccctccgtcccaaaataagtgtctcaa 71
Score = 58.0 bits (29), Expect = 3e-08
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 36 aagtgtctcaactttgtattagctgtagtataaaattgtattaagcttgagatacttatt 95
||||||||||| ||| | || || ||||| ||| ||||| |||| |||||| |||||||
Sbjct: 25 aagtgtctcaattttacactaactctagtacaaagttgtactaaggttgagacacttatt 84
Query: 96 ttggaacggagggagta 112
|||| ||||||||||||
Sbjct: 85 ttgggacggagggagta 101
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 6 tactccctccgtcccaaaataagtgtctcaa 36
|||||| ||||||||||||||||||||||||
Sbjct: 5 tactccttccgtcccaaaataagtgtctcaa 35
>RF00906;MIR1122;AF521177.1/206122-206018 4513:Hordeum vulgare
Length = 105
Score = 60.0 bits (30), Expect = 7e-09
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 39 tgtctcaactttgtattagctgtagtataaaattgtattaagcttgagatacttattttg 98
||||||||||||||| ||||| ||||| ||| ||||| ||||| ||| | | ||||||||
Sbjct: 78 tgtctcaactttgtactagctctagtacaaagttgtactaagcatgaaacaattattttg 19
Query: 99 gaacggagggagta 112
|| ||||||||||
Sbjct: 18 aaatggagggagta 5
>RF00906;MIR1122;DQ175992.1/50-154 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 60.0 bits (30), Expect = 7e-09
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 39 tgtctcaactttgtattagctgtagtataaaattgtattaagcttgagatacttattttg 98
||||| |||||||| ||||| |||||||||||| || ||||||| ||| |||||||||
Sbjct: 78 tgtcttaactttgttctagctctagtataaaattatactaagcttaagacacttatttta 19
Query: 99 gaacggagggagta 112
||||||| |||||
Sbjct: 18 aaacggagagagta 5
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 6 tactccctccgtcccaaaataagtgtct 33
|||||||||||||||||||||| |||||
Sbjct: 101 tactccctccgtcccaaaataattgtct 74
>RF00906;MIR1122;EU593539.1/914-1018 4513:Hordeum vulgare
Length = 105
Score = 60.0 bits (30), Expect = 7e-09
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 39 tgtctcaactttgtattagctgtagtataaaattgtattaagcttgagatacttattttg 98
|||||||||||| || ||| | ||||||||| || || ||||||| ||| | ||||||||
Sbjct: 78 tgtctcaactttatactagatctagtataaatttatactaagcttaagacagttattttg 19
Query: 99 gaacggagggagta 112
| ||||||||||||
Sbjct: 18 ggacggagggagta 5
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 6 tactccctccgtcccaaaataagtgtctcaa 36
|||||||||||||||||||||| ||||||||
Sbjct: 101 tactccctccgtcccaaaataactgtctcaa 71
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 5 ttactccctccgtcccaaaataagtgtct 33
||||||||||||||||||||||| |||||
Sbjct: 4 ttactccctccgtcccaaaataactgtct 32
>RF00906;MIR1122;DQ901436.1/1229-1333 4565:Triticum aestivum
(bread wheat)
Length = 105
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 8 ctccctccgtcccaaaataagtgtctcaa 36
|||||||||||||||||||||||||||||
Sbjct: 7 ctccctccgtcccaaaataagtgtctcaa 35
Score = 46.1 bits (23), Expect = 1e-04
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 36 aagtgtctcaactttgtattagctgtagtataaaattgtattaagcttgagatacttatt 95
|||||||||||||||||| ||||| || || ||| ||||| || |||||| |||||||
Sbjct: 25 aagtgtctcaactttgtactagctttaatacaaagttgtactagagttgagacacttatt 84
Query: 96 ttg 98
|||
Sbjct: 85 ttg 87
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 3 tgttactccctccgtcccaaaataagtgtctcaa 36
|||||||| |||| || |||||||||||||||||
Sbjct: 104 tgttactcactccatctcaaaataagtgtctcaa 71
>RF00906;MIR1122;AB183299.1/312-404 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 8 ctccctccgtcccaaaataagtgtctcaa 36
|||||||||||||||||||||||||||||
Sbjct: 7 ctccctccgtcccaaaataagtgtctcaa 35
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 6 tactccctccgtcccaaaataagtgtctcaa 36
|||| ||||||||||||||||||||||||||
Sbjct: 89 tacttcctccgtcccaaaataagtgtctcaa 59
>RF00906;MIR1122;FJ491378.1/4581-4466 4550:Secale cereale (rye)
Length = 116
Score = 58.0 bits (29), Expect = 3e-08
Identities = 42/45 (93%), Gaps = 1/45 (2%)
Strand = Plus / Minus
Query: 6 tactccctccgtcccaaaataagtgtctc-aaagtgtctcaactt 49
||||||||||||||||||||||||| ||| |||||| ||||||||
Sbjct: 112 tactccctccgtcccaaaataagtgactcaaaagtgactcaactt 68
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 6 tactccctccgtcccaaaataagtgtctcaaa 37
||||||||| ||||||||||||||| ||||||
Sbjct: 5 tactccctctgtcccaaaataagtgactcaaa 36
>RF00906;MIR1122;AK250735.1/291-376 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 86
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 6 tactccctccgtcccaaaataagtgtctc 34
|||||||||||||||||||||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtctc 33
>RF00906;MIR1122;AJ507395.1/7785-7899 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 115
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 6 tactccctccgtcccaaaataagtgtctcaaa 37
||||||||||||||||||||||||| ||||||
Sbjct: 111 tactccctccgtcccaaaataagtgactcaaa 80
Score = 44.1 bits (22), Expect = 4e-04
Identities = 41/46 (89%), Gaps = 1/46 (2%)
Strand = Plus / Plus
Query: 9 tccctccgtcccaaaataagtgtctc-aaagtgtctcaactttgta 53
|||||| ||||||||||||||| ||| ||| || ||||||||||||
Sbjct: 8 tccctctgtcccaaaataagtgactcaaaaatgactcaactttgta 53
>RF00906;MIR1122;EU282251.1/1314-1209 52152:Elymus repens
Length = 106
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 6 tactccctccgtcccaaaataagtgtctcaaa 37
||||||||||||||||||||||||||| ||||
Sbjct: 5 tactccctccgtcccaaaataagtgtcgcaaa 36
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 6 tactccctccgtcccaaaataagtgtc 32
|||||||||||||||||||||||||||
Sbjct: 102 tactccctccgtcccaaaataagtgtc 76
>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
Length = 112
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 6 tactccctccgtcccaaaataagtgtct 33
||||||||||||||||||||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtct 32
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 6 tactccctccgtcccaaaataagtgtctcaa 36
|||||||||| ||||||||||||||||||||
Sbjct: 108 tactccctccatcccaaaataagtgtctcaa 78
Score = 46.1 bits (23), Expect = 1e-04
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 36 aagtgtctcaactttgtattagctgtagtataaaattgtattaagct 82
|||||||||||||||||| || || ||||| ||| ||||| ||||||
Sbjct: 88 aagtgtctcaactttgtactaactttagtacaaagttgtactaagct 42
>RF00906;MIR1122;AF488415.1/78603-78755 4568:Triticum monococcum
Length = 153
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 6 tactccctccgtcccaaaataagtgtctcaa 36
|||||||||||||||||||||| ||||||||
Sbjct: 149 tactccctccgtcccaaaataactgtctcaa 119
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 8 ctccctccgtcccaaaataagtgtctcaa 36
|||||| ||||||||||||||||||||||
Sbjct: 7 ctcccttcgtcccaaaataagtgtctcaa 35
Score = 48.1 bits (24), Expect = 3e-05
Identities = 63/76 (82%)
Strand = Plus / Minus
Query: 40 gtctcaactttgtattagctgtagtataaaattgtattaagcttgagatacttattttgg 99
|||||||||||||| || | |||| ||| ||||| |||| |||||| |||||||||||
Sbjct: 77 gtctcaactttgtactaaatttagtgcaaagttgtactaaggttgagacacttattttgg 18
Query: 100 aacggagggagtacta 115
||| |||||| ||||
Sbjct: 17 gacgaagggagaacta 2
>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
Length = 104
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 6 tactccctccgtcccaaaataagtgtctcaa 36
||||||||||||||||||||||||| |||||
Sbjct: 100 tactccctccgtcccaaaataagtgactcaa 70
>RF00906;MIR1122;DQ445238.1/5626-5730 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 6 tactccctccgtcccaaaataagtgtctcaa 36
|||||||||||||||||||||| ||||||||
Sbjct: 101 tactccctccgtcccaaaataactgtctcaa 71
Score = 52.0 bits (26), Expect = 2e-06
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 39 tgtctcaactttgtattagctgtagtataaaattgtattaagcttgagatacttattttg 98
|||||||||||| || ||| | || |||||| || || ||||||| ||| | ||||||||
Sbjct: 78 tgtctcaactttatactagatctaatataaatttatactaagcttaagacagttattttg 19
Query: 99 gaacggagggagta 112
| ||||||||||||
Sbjct: 18 ggacggagggagta 5
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 5 ttactccctccgtcccaaaataagtgtct 33
||||||||||||||||||||||| |||||
Sbjct: 4 ttactccctccgtcccaaaataactgtct 32
>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
Length = 132
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 6 tactccctccgtcccaaaataagtgtctcaa 36
||||||||||||||||||||||||| |||||
Sbjct: 5 tactccctccgtcccaaaataagtgactcaa 35
>RF01058;MIR806;AL731615.4/103346-103100 39947:Oryza sativa
Japonica Group
Length = 247
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 6 tactccctccgtcccaaaataagtgt 31
||||||||||||||||||||||||||
Sbjct: 2 tactccctccgtcccaaaataagtgt 27
>RF01058;MIR806;AAAA02014927.1/5775-5532 39946:Oryza sativa Indica
Group
Length = 244
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 5 ttactccctccgtcccaaaataagtg 30
||||||||||||||||||||||||||
Sbjct: 1 ttactccctccgtcccaaaataagtg 26
>RF01058;MIR806;AP008214.1/5532426-5532666 39947:Oryza sativa
Japonica Group
Length = 241
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 5 ttactccctccgtcccaaaataagtg 30
||||||||||||||||||||||||||
Sbjct: 241 ttactccctccgtcccaaaataagtg 216
>RF01058;MIR806;AP004672.3/126730-126486 39947:Oryza sativa
Japonica Group
Length = 245
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 5 ttactccctccgtcccaaaataagtg 30
||||||||||||||||||||||||||
Sbjct: 1 ttactccctccgtcccaaaataagtg 26
>RF01058;MIR806;AACV01005022.1/1990-2230 39947:Oryza sativa Japonica
Group
Length = 241
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 5 ttactccctccgtcccaaaataagtg 30
||||||||||||||||||||||||||
Sbjct: 241 ttactccctccgtcccaaaataagtg 216
>RF00906;MIR1122;AB239678.1/2131-2247 52163:Triticum monococcum
subsp. aegilopoides
Length = 117
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 3 tgttactccctccgtcccaaaataagtgtctcaa 36
||||||||||||||||||||| |||||| |||||
Sbjct: 2 tgttactccctccgtcccaaattaagtgactcaa 35
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 6 tactccctccgtcccaaaataagtgtctcaa 36
|||||||||||||||||| |||||| |||||
Sbjct: 113 tactccctccgtcccaaattaagtgactcaa 83
>RF00906;MIR1122;AB182945.1/6773-6906 4565:Triticum aestivum (bread
wheat)
Length = 134
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 6 tactccctccgtcccaaaataagtgtctca 35
|||||||||||| |||||||||||||||||
Sbjct: 130 tactccctccgttccaaaataagtgtctca 101
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 83 tgagatacttattttggaacggagggagta 112
||||| ||||||||||||||||||||||||
Sbjct: 101 tgagacacttattttggaacggagggagta 130
>RF00906;MIR1122;DQ995510.1/1615-1718 4513:Hordeum vulgare
Length = 104
Score = 52.0 bits (26), Expect = 2e-06
Identities = 63/74 (85%), Gaps = 1/74 (1%)
Strand = Plus / Minus
Query: 39 tgtctcaactttgtattagctgtagtataaaattgtattaagcttgagatacttattttg 98
||||||||||||||| ||||| ||||| ||| ||||| ||| |||||| | ||||||||
Sbjct: 77 tgtctcaactttgtactagctctagtacaaagttgtacaaag-ttgagacagttattttg 19
Query: 99 gaacggagggagta 112
||||||||||||
Sbjct: 18 agacggagggagta 5
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 6 tactccctccgtcccaaaataagtgtctcaa 36
||||||||||||| |||||||| ||||||||
Sbjct: 5 tactccctccgtctcaaaataactgtctcaa 35
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 6 tactccctccgtcccaaaataagtgtctcaa 36
|||||||||| ||||||||||| ||||||||
Sbjct: 100 tactccctccatcccaaaataactgtctcaa 70
>RF01058;MIR806;AP008208.1/6823788-6823544 39947:Oryza sativa
Japonica Group
Length = 245
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 6 tactccctccgtcccaaaataagtg 30
|||||||||||||||||||||||||
Sbjct: 244 tactccctccgtcccaaaataagtg 220
>RF01058;MIR806;AACV01004692.1/2655-2900 39947:Oryza sativa
Japonica Group
Length = 246
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 6 tactccctccgtcccaaaataagtg 30
|||||||||||||||||||||||||
Sbjct: 2 tactccctccgtcccaaaataagtg 26
>RF01058;MIR806;AACV01000175.1/175-418 39947:Oryza sativa Japonica
Group
Length = 244
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 6 tactccctccgtcccaaaataagtg 30
|||||||||||||||||||||||||
Sbjct: 2 tactccctccgtcccaaaataagtg 26
>RF01058;MIR806;AAAA02015465.1/824-1069 39946:Oryza sativa Indica
Group
Length = 246
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 6 tactccctccgtcccaaaataagtg 30
|||||||||||||||||||||||||
Sbjct: 245 tactccctccgtcccaaaataagtg 221
>RF01058;MIR806;AP004279.1/119207-118967 39947:Oryza sativa Japonica
Group
Length = 241
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 6 tactccctccgtcccaaaataagtg 30
|||||||||||||||||||||||||
Sbjct: 240 tactccctccgtcccaaaataagtg 216
>RF01058;MIR806;AACV01025022.1/35011-35254 39947:Oryza sativa
Japonica Group
Length = 244
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 6 tactccctccgtcccaaaataagtg 30
|||||||||||||||||||||||||
Sbjct: 2 tactccctccgtcccaaaataagtg 26
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 5 ttactccctccgtcccaaaataagtg 30
||||| ||||||||||||||||||||
Sbjct: 244 ttactacctccgtcccaaaataagtg 219
>RF01058;MIR806;AAAA02004537.1/25464-25706 39946:Oryza sativa
Indica Group
Length = 243
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 6 tactccctccgtcccaaaataagtg 30
|||||||||||||||||||||||||
Sbjct: 2 tactccctccgtcccaaaataagtg 26
>RF01058;MIR806;AAAA02012959.1/2038-1794 39946:Oryza sativa Indica
Group
Length = 245
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 6 tactccctccgtcccaaaataagtg 30
|||||||||||||||||||||||||
Sbjct: 2 tactccctccgtcccaaaataagtg 26
>RF01058;MIR806;AAAA02009876.1/3121-2881 39946:Oryza sativa Indica
Group
Length = 241
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 6 tactccctccgtcccaaaataagtg 30
|||||||||||||||||||||||||
Sbjct: 240 tactccctccgtcccaaaataagtg 216
>RF01058;MIR806;AAAA02007955.1/54103-53859 39946:Oryza sativa
Indica Group
Length = 245
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 6 tactccctccgtcccaaaataagtg 30
|||||||||||||||||||||||||
Sbjct: 2 tactccctccgtcccaaaataagtg 26
>RF00906;MIR1122;U29095.1/333-439 4565:Triticum aestivum (bread
wheat)
Length = 107
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 6 tactccctccgtcccaaaataagtg 30
|||||||||||||||||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtg 29
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 6 tactccctccgtcccaaaataagtgtctcaa 36
||||||||||||||| ||||||||| |||||
Sbjct: 103 tactccctccgtcccgaaataagtgactcaa 73
>RF00906;MIR1122;DQ267106.1/62901-62968 4572:Triticum urartu
Length = 68
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 6 tactccctccgtcccaaaataagtg 30
|||||||||||||||||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtg 29
>RF00906;MIR1122;AK249748.1/2677-2573 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 50.1 bits (25), Expect = 6e-06
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 39 tgtctcaactttgtattagctgtagtataaaattgtattaagcttgagatacttattttg 98
||||| ||||||||| ||||| || |||||| || || |||| || ||| | ||||||||
Sbjct: 28 tgtcttaactttgtactagctttactataaatttatactaagtttaagacatttattttg 87
Query: 99 gaacggagggagtacta 115
|||||||||||||||
Sbjct: 88 cgacggagggagtacta 104
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 91 ttattttggaacggagggagtactat 116
|||||||||||| |||||||||||||
Sbjct: 26 ttattttggaacagagggagtactat 1
>RF00906;MIR1122;AF181455.1/3108-2994 4513:Hordeum vulgare
Length = 115
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 6 tactccctccgtcccaaaataagtg 30
|||||||||||||||||||||||||
Sbjct: 111 tactccctccgtcccaaaataagtg 87
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 89 acttattttggaacggagggagtacta 115
||||||||||| |||||||||||||||
Sbjct: 88 acttattttgggacggagggagtacta 114
>RF00906;MIR1122;AP008214.1/14410723-14410632 39947:Oryza sativa
Japonica Group
Length = 92
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 6 tactccctccgtcccaaaataagtg 30
|||||||||||||||||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtg 29
>RF00906;MIR1122;FJ491378.1/3751-3855 4550:Secale cereale (rye)
Length = 105
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 tccctccgtcccaaaataagtgtc 32
||||||||||||||||||||||||
Sbjct: 8 tccctccgtcccaaaataagtgtc 31
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 6 tactccctccgtcccaaaataagtgtc 32
||||||| |||||||||||||||||||
Sbjct: 101 tactcccgccgtcccaaaataagtgtc 75
>RF00906;MIR1122;AK252095.1/1820-1925 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 106
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 6 tactccctccgtcccaaaataagtgtctcaaa 37
||||||||| ||||||||||||||||| ||||
Sbjct: 102 tactccctctgtcccaaaataagtgtcacaaa 71
>RF00906;MIR1122;EU282770.1/593-711 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 119
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 6 tactccctccgtcccaaaataagtgtctcaaa 37
|||||||||||||||||||||| |||| ||||
Sbjct: 115 tactccctccgtcccaaaataactgtcccaaa 84
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 6 tactccctccgtcccaaaataagtgtctcaa 36
||||||||||||| ||||||| |||||||||
Sbjct: 5 tactccctccgtctcaaaataggtgtctcaa 35
Score = 44.1 bits (22), Expect = 4e-04
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 38 gtgtctcaactttgtattagctgtagtataaaattgtattaagcttgagatacttatttt 97
||||||||||||| ||||| ||||||||| ||||| |||| |||||| | |||||||
Sbjct: 27 gtgtctcaactttaccctagctctagtataaagttgtactaagtttgagaaagttatttt 86
Query: 98 gg 99
||
Sbjct: 87 gg 88
>RF00906;MIR1122;AF525764.1/1593-1489 200361:Aegilops tauschii
subsp. strangulata
Length = 105
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 6 tactccctccgtcccaaaataagtgtct 33
|||||||||| |||||||||||||||||
Sbjct: 101 tactccctccatcccaaaataagtgtct 74
>RF00906;MIR1122;AC210489.1/47612-47477 4538:Oryza glaberrima
(African rice)
Length = 136
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 3 tgttactccctccgtcccaaaata 26
||||||||||||||||||||||||
Sbjct: 135 tgttactccctccgtcccaaaata 112
>RF00906;MIR1122;AP008216.1/15579713-15579809 39947:Oryza sativa
Japonica Group
Length = 97
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 tactccctccgtcccaaaataagt 29
||||||||||||||||||||||||
Sbjct: 5 tactccctccgtcccaaaataagt 28
>RF00906;MIR1122;AC217198.1/19286-19151 4537:Oryza punctata
Length = 136
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 3 tgttactccctccgtcccaaaata 26
||||||||||||||||||||||||
Sbjct: 135 tgttactccctccgtcccaaaata 112
>RF00906;MIR1122;AP008213.1/28683389-28683301 39947:Oryza sativa
Japonica Group
Length = 89
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 89 acttattttggaacggagggagta 112
||||||||||||||||||||||||
Sbjct: 62 acttattttggaacggagggagta 85
>RF00906;MIR1122;AP008209.1/554501-554366 39947:Oryza sativa
Japonica Group
Length = 136
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 3 tgttactccctccgtcccaaaata 26
||||||||||||||||||||||||
Sbjct: 135 tgttactccctccgtcccaaaata 112
>RF00906;MIR1122;AACV01019101.1/4942-4817 39947:Oryza sativa
Japonica Group
Length = 126
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 2 ttgttactccctccgtcccaaaataagt 29
||||||||| ||||||||||||||||||
Sbjct: 1 ttgttactctctccgtcccaaaataagt 28
>RF01058;MIR806;AP008208.1/24144061-24144300 39947:Oryza sativa
Japonica Group
Length = 240
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 tactccctccgtcccaaaataag 28
|||||||||||||||||||||||
Sbjct: 2 tactccctccgtcccaaaataag 24
>RF01058;MIR806;AACV01020112.1/46634-46870 39947:Oryza sativa
Japonica Group
Length = 237
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 tactccctccgtcccaaaataag 28
|||||||||||||||||||||||
Sbjct: 2 tactccctccgtcccaaaataag 24
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 6 tactccctccgtcccaaaataa 27
||||||||||||||||||||||
Sbjct: 236 tactccctccgtcccaaaataa 215
>RF01058;MIR806;AACV01004890.1/11000-11239 39947:Oryza sativa
Japonica Group
Length = 240
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 6 tactccctccgtcccaaaataag 28
|||||||||||||||||||||||
Sbjct: 239 tactccctccgtcccaaaataag 217
>RF00906;MIR1122;D30809.1/4836-4921 4565:Triticum aestivum (bread
wheat)
Length = 86
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 6 tactccctccgtcccaaaataagtgtc 32
||||||| |||||||||||||||||||
Sbjct: 82 tactcccaccgtcccaaaataagtgtc 56
>RF00906;MIR1122;EF560592.1/17009-17118 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 110
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 6 tactccctccgtcccaaaataagtgtc 32
|||| ||||||||||||||||||||||
Sbjct: 106 tactacctccgtcccaaaataagtgtc 80
>RF00906;MIR1122;EU626553.1/80133-80237 4572:Triticum urartu
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 92 tattttggaacggagggagtact 114
|||||||||||||||||||||||
Sbjct: 25 tattttggaacggagggagtact 3
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 92 tattttggaacggagggagtac 113
||||||||||||||||||||||
Sbjct: 81 tattttggaacggagggagtac 102
>RF00906;MIR1122;CR626933.1/11895-11804 4571:Triticum turgidum
Length = 92
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 11 cctccgtcccaaaataagtgtct 33
|||||||||||||||||||||||
Sbjct: 85 cctccgtcccaaaataagtgtct 63
>RF00906;MIR1122;AY137517.1/5819-5912 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 94
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 89 acttattttggaacggagggagtacta 115
|||||||||||| ||||||||||||||
Sbjct: 67 acttattttggatcggagggagtacta 93
>RF00906;MIR1122;DQ900687.1/24296-24401 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 106
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 6 tactccctccgtcccaaaataagtgtc 32
|||||||||||||| ||||||||||||
Sbjct: 102 tactccctccgtcctaaaataagtgtc 76
>RF00906;MIR1122;AJ234583.1/157-260 4513:Hordeum vulgare
Length = 104
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 77 taagcttgagatacttattttggaacggagggagtacta 115
||||||||||| | |||||||| |||||||||||||||
Sbjct: 65 taagcttgagacaattattttgagacggagggagtacta 103
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 6 tactccctccgtcccaaaataagtgtctcaa 36
||||||||||||| |||||||| ||||||||
Sbjct: 100 tactccctccgtctcaaaataattgtctcaa 70
>RF00906;MIR1122;EU282656.1/645-750 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 106
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 6 tactccctccgtcccaaaataagtgtc 32
||||||||| |||||||||||||||||
Sbjct: 102 tactccctcggtcccaaaataagtgtc 76
>RF00906;MIR1122;FJ477093.1/40908-41001 4513:Hordeum vulgare
Length = 94
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 6 tactccctccgtcccaaaataagtgtctcaa 36
||||||||| ||||||||||||||| |||||
Sbjct: 5 tactccctctgtcccaaaataagtgactcaa 35
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 6 tactccctccgtcccaaaataagtgtctcaa 36
|||||||||||||||||| |||||| |||||
Sbjct: 90 tactccctccgtcccaaattaagtgactcaa 60
>RF00906;MIR1122;AF091802.1/1995-2099 37682:Aegilops tauschii
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 92 tattttggaacggagggagtact 114
|||||||||||||||||||||||
Sbjct: 25 tattttggaacggagggagtact 3
>RF00906;MIR1122;AAAA02028442.1/1248-1113 39946:Oryza sativa Indica
Group
Length = 136
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 5 ttactccctccgtcccaaaataa 27
|||||||||||||||||||||||
Sbjct: 133 ttactccctccgtcccaaaataa 111
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tactccctccgtcccaaaataa 27
||||||||||||||||||||||
Sbjct: 5 tactccctccgtcccaaaataa 26
>RF00906;MIR1122;AAAA02018853.1/118-229 39946:Oryza sativa Indica
Group
Length = 112
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 4 gttactccctccgtcccaaaata 26
|||||||||||||||||||||||
Sbjct: 110 gttactccctccgtcccaaaata 88
>RF00906;MIR1122;AACV01011125.1/13959-13873 39947:Oryza sativa
Japonica Group
Length = 87
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 gttactccctccgtcccaaaata 26
|||||||||||||||||||||||
Sbjct: 3 gttactccctccgtcccaaaata 25
>RF00906;MIR1122;AAAA02013097.1/8926-9081 39946:Oryza sativa
Indica Group
Length = 156
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 gttactccctccgtcccaaaata 26
|||||||||||||||||||||||
Sbjct: 3 gttactccctccgtcccaaaata 25
>RF00906;MIR1122;AACV01020861.1/25006-25108 39947:Oryza sativa
Japonica Group
Length = 103
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 5 ttactccctccgtcccaaaataa 27
|||||||||||||||||||||||
Sbjct: 100 ttactccctccgtcccaaaataa 78
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tactccctccgtcccaaaataa 27
||||||||||||||||||||||
Sbjct: 5 tactccctccgtcccaaaataa 26
>RF00906;MIR1122;AACV01009606.1/13757-13637 39947:Oryza sativa
Japonica Group
Length = 121
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 ttactccctccgtcccaaaataa 27
|||||||||||||||||||||||
Sbjct: 4 ttactccctccgtcccaaaataa 26
>RF00906;MIR1122;AP003303.4/77673-77577 39947:Oryza sativa
Japonica Group
Length = 97
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 tactccctccgtcccaaaataag 28
|||||||||||||||||||||||
Sbjct: 5 tactccctccgtcccaaaataag 27
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 6 tactccctccgtcccaaaataag 28
|||||||||||||||||||||||
Sbjct: 93 tactccctccgtcccaaaataag 71
>RF00906;MIR1122;AC229754.2/94242-94126 63629:Oryza minuta
Length = 117
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 5 ttactccctccgtcccaaaataa 27
|||||||||||||||||||||||
Sbjct: 114 ttactccctccgtcccaaaataa 92
>RF00906;MIR1122;AC093492.3/33191-33068 39947:Oryza sativa Japonica
Group
Length = 124
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 4 gttactccctccgtcccaaaata 26
|||||||||||||||||||||||
Sbjct: 122 gttactccctccgtcccaaaata 100
>RF00906;MIR1122;AAAA02006222.1/38105-37993 39946:Oryza sativa
Indica Group
Length = 113
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 ttactccctccgtcccaaaataa 27
|||||||||||||||||||||||
Sbjct: 4 ttactccctccgtcccaaaataa 26
>RF00906;MIR1122;ABXC01006480.1/93142-93031 4558:Sorghum bicolor
(sorghum)
Length = 112
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tactccctccgtcccaaaataa 27
||||||||||||||||||||||
Sbjct: 5 tactccctccgtcccaaaataa 26
>RF00906;MIR1122;AY465427.2/1983-1848 4567:Triticum turgidum subsp.
durum (durum wheat)
Length = 136
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 92 tattttggaacggagggagtac 113
||||||||||||||||||||||
Sbjct: 25 tattttggaacggagggagtac 4
>RF00906;MIR1122;EU660894.1/143713-143848 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 136
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 92 tattttggaacggagggagtac 113
||||||||||||||||||||||
Sbjct: 112 tattttggaacggagggagtac 133
>RF00906;MIR1122;AAAA02022195.1/27114-27226 39946:Oryza sativa
Indica Group
Length = 113
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 6 tactccctccgtcccaaaataa 27
||||||||||||||||||||||
Sbjct: 109 tactccctccgtcccaaaataa 88
>RF00906;MIR1122;AAAA02036662.1/2377-2433 39946:Oryza sativa
Indica Group
Length = 57
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 5 ttactccctccgtcccaaaata 26
||||||||||||||||||||||
Sbjct: 54 ttactccctccgtcccaaaata 33
>RF00906;MIR1122;AAAA02005537.1/4098-4188 39946:Oryza sativa
Indica Group
Length = 91
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 5 ttactccctccgtcccaaaata 26
||||||||||||||||||||||
Sbjct: 88 ttactccctccgtcccaaaata 67
>RF00906;MIR1122;AAAA02000966.1/612-453 39946:Oryza sativa Indica
Group
Length = 160
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tactccctccgtcccaaaataa 27
||||||||||||||||||||||
Sbjct: 5 tactccctccgtcccaaaataa 26
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 6 tactccctccgtcccaaaataa 27
||||||||||||||||||||||
Sbjct: 156 tactccctccgtcccaaaataa 135
>RF00906;MIR1122;FJ581044.1/175385-175266 4538:Oryza glaberrima
(African rice)
Length = 120
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 91 ttattttggaacggagggagtactat 116
||||||||| ||||||||||||||||
Sbjct: 26 ttattttgggacggagggagtactat 1
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tactccctccgtcccaaaataa 27
||||||||||||||||||||||
Sbjct: 5 tactccctccgtcccaaaataa 26
>RF00906;MIR1122;ABRL01001046.1/3877-3720 65489:Oryza barthii
Length = 158
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 2 ttgttactccctccgtcccaaaataa 27
|||||||||||||||||| |||||||
Sbjct: 1 ttgttactccctccgtcctaaaataa 26
>RF00906;MIR1122;AP002972.3/107404-107293 39947:Oryza sativa
Japonica Group
Length = 112
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 ttactccctccgtcccaaaata 26
||||||||||||||||||||||
Sbjct: 4 ttactccctccgtcccaaaata 25
>RF00906;MIR1122;AAAA02018379.1/19319-19440 39946:Oryza sativa
Indica Group
Length = 122
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 6 tactccctccgtcccaaaataa 27
||||||||||||||||||||||
Sbjct: 118 tactccctccgtcccaaaataa 97
>RF00906;MIR1122;AP008210.1/31519155-31519262 39947:Oryza sativa
Japonica Group
Length = 108
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 5 ttactccctccgtcccaaaata 26
||||||||||||||||||||||
Sbjct: 105 ttactccctccgtcccaaaata 84
>RF00906;MIR1122;AAAA02025080.1/2043-2177 39946:Oryza sativa
Indica Group
Length = 135
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 ttactccctccgtcccaaaata 26
||||||||||||||||||||||
Sbjct: 4 ttactccctccgtcccaaaata 25
>RF00906;MIR1122;AP003913.3/29133-29264 39947:Oryza sativa
Japonica Group
Length = 132
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 ttactccctccgtcccaaaata 26
||||||||||||||||||||||
Sbjct: 4 ttactccctccgtcccaaaata 25
>RF00906;MIR1122;CR855143.1/66136-66012 4530:Oryza sativa (rice)
Length = 125
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 5 ttactccctccgtcccaaaata 26
||||||||||||||||||||||
Sbjct: 122 ttactccctccgtcccaaaata 101
>RF00906;MIR1122;AACV01001981.1/7100-7193 39947:Oryza sativa
Japonica Group
Length = 94
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tactccctccgtcccaaaataa 27
||||||||||||||||||||||
Sbjct: 5 tactccctccgtcccaaaataa 26
>RF00906;MIR1122;AP008213.1/15559796-15559689 39947:Oryza sativa
Japonica Group
Length = 108
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 5 ttactccctccgtcccaaaata 26
||||||||||||||||||||||
Sbjct: 105 ttactccctccgtcccaaaata 84
>RF00906;MIR1122;AAAA02004209.1/3478-3367 39946:Oryza sativa
Indica Group
Length = 112
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 ttactccctccgtcccaaaata 26
||||||||||||||||||||||
Sbjct: 4 ttactccctccgtcccaaaata 25
>RF00906;MIR1122;AAAA02019483.1/16379-16491 39946:Oryza sativa
Indica Group
Length = 113
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 6 tactccctccgtcccaaaataa 27
||||||||||||||||||||||
Sbjct: 109 tactccctccgtcccaaaataa 88
>RF00906;MIR1122;AP008212.1/6831401-6831305 39947:Oryza sativa
Japonica Group
Length = 97
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 6 tactccctccgtcccaaaataa 27
||||||||||||||||||||||
Sbjct: 93 tactccctccgtcccaaaataa 72
>RF00906;MIR1122;AL606691.4/2041-1917 39947:Oryza sativa Japonica
Group
Length = 125
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 5 ttactccctccgtcccaaaata 26
||||||||||||||||||||||
Sbjct: 122 ttactccctccgtcccaaaata 101
>RF00906;MIR1122;AAAA02018626.1/12551-12423 39946:Oryza sativa
Indica Group
Length = 129
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 6 tactccctccgtcccaaaataa 27
||||||||||||||||||||||
Sbjct: 125 tactccctccgtcccaaaataa 104
>RF00906;MIR1122;AP008208.1/1673372-1673471 39947:Oryza sativa
Japonica Group
Length = 100
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 5 ttactccctccgtcccaaaata 26
||||||||||||||||||||||
Sbjct: 97 ttactccctccgtcccaaaata 76
>RF00906;MIR1122;AACV01001520.1/25871-25960 39947:Oryza sativa
Japonica Group
Length = 90
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tactccctccgtcccaaaataa 27
||||||||||||||||||||||
Sbjct: 5 tactccctccgtcccaaaataa 26
>RF00906;MIR1122;CR855160.1/7113-7006 4530:Oryza sativa (rice)
Length = 108
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 ttactccctccgtcccaaaata 26
||||||||||||||||||||||
Sbjct: 4 ttactccctccgtcccaaaata 25
