miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AACV01019101.1/4942-4817 39947:Oryza sativa
Japonica Group
Length = 126
Score = 56.0 bits (28), Expect = 3e-07
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 3 taagtactccctccatcccaaaataagt 30
||||||||||||||||||||||||||||
Sbjct: 126 taagtactccctccatcccaaaataagt 99
>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
subsp. dicoccoides
Length = 105
Score = 52.0 bits (26), Expect = 4e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 6 gtactccctccatcccaaaataagtg 31
||||||||||||||||||||||||||
Sbjct: 102 gtactccctccatcccaaaataagtg 77
>RF00906;MIR1122;AY663392.1/117099-117203 4565:Triticum aestivum
(bread wheat)
Length = 105
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 7 tactccctccatcccaaaataagtg 31
|||||||||||||||||||||||||
Sbjct: 101 tactccctccatcccaaaataagtg 77
>RF00906;MIR1122;AF181455.1/3108-2994 4513:Hordeum vulgare
Length = 115
Score = 50.1 bits (25), Expect = 2e-05
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 5 agtactccctccatcccaaaataagtgac 33
|||||||||||| ||||||||||||||||
Sbjct: 113 agtactccctccgtcccaaaataagtgac 85
>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
Length = 112
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 7 tactccctccatcccaaaataagtg 31
|||||||||||||||||||||||||
Sbjct: 108 tactccctccatcccaaaataagtg 84
>RF00906;MIR1122;AF525764.1/1593-1489 200361:Aegilops tauschii
subsp. strangulata
Length = 105
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 7 tactccctccatcccaaaataagtg 31
|||||||||||||||||||||||||
Sbjct: 101 tactccctccatcccaaaataagtg 77
>RF00906;MIR1122;AP006526.2/71284-71151 39947:Oryza sativa Japonica
Group
Length = 134
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 4 aagtactccctccatcccaaaataa 28
|||||||||||||||||||||||||
Sbjct: 133 aagtactccctccatcccaaaataa 109
>RF00906;MIR1122;AJ507395.1/7785-7899 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 115
Score = 48.1 bits (24), Expect = 6e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 6 gtactccctccatcccaaaataagtgac 33
||||||||||| ||||||||||||||||
Sbjct: 112 gtactccctccgtcccaaaataagtgac 85
>RF00906;MIR1122;DQ995510.1/1615-1718 4513:Hordeum vulgare
Length = 104
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 5 agtactccctccatcccaaaataa 28
||||||||||||||||||||||||
Sbjct: 102 agtactccctccatcccaaaataa 79
>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
Length = 132
Score = 48.1 bits (24), Expect = 6e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 6 gtactccctccatcccaaaataagtgac 33
|||||| |||||||||||||||||||||
Sbjct: 129 gtactcgctccatcccaaaataagtgac 102
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 7 tactccctccatcccaaaataagtgac 33
|||||||||| ||||||||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgac 31
>RF00906;MIR1122;AP008214.1/14410723-14410632 39947:Oryza sativa
Japonica Group
Length = 92
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 8 actccctccatcccaaaataagtg 31
||||||||||||||||||||||||
Sbjct: 87 actccctccatcccaaaataagtg 64
>RF00906;MIR1122;AP008208.1/6008947-6008837 39947:Oryza sativa
Japonica Group
Length = 111
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 4 aagtactccctccatcccaaaata 27
||||||||||||||||||||||||
Sbjct: 2 aagtactccctccatcccaaaata 25
>RF01058;MIR806;AAAA02032712.1/19270-19031 39946:Oryza sativa Indica
Group
Length = 240
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 7 tactccctccatcccaaaataag 29
|||||||||||||||||||||||
Sbjct: 239 tactccctccatcccaaaataag 217
>RF00906;MIR1122;FJ491378.1/4581-4466 4550:Secale cereale (rye)
Length = 116
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 7 tactccctccatcccaaaataagtgac 33
|||||||||| ||||||||||||||||
Sbjct: 112 tactccctccgtcccaaaataagtgac 86
>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
Length = 104
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 7 tactccctccatcccaaaataagtgac 33
|||||||||| ||||||||||||||||
Sbjct: 100 tactccctccgtcccaaaataagtgac 74
>RF00906;MIR1122;FJ477093.1/40908-41001 4513:Hordeum vulgare
Length = 94
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 3 taagtactccctccatcccaaaataagtgac 33
|||||||||||||| ||||||| ||||||||
Sbjct: 94 taagtactccctccgtcccaaattaagtgac 64
>RF00906;MIR1122;AAAA02035057.1/21564-21428 39946:Oryza sativa
Indica Group
Length = 137
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 gtactccctccatcccaaaataa 28
|||||||||||||||||||||||
Sbjct: 4 gtactccctccatcccaaaataa 26
>RF00906;MIR1122;AL731784.3/7045-7181 4530:Oryza sativa (rice)
Length = 137
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 gtactccctccatcccaaaataa 28
|||||||||||||||||||||||
Sbjct: 4 gtactccctccatcccaaaataa 26
>RF00906;MIR1122;AAAA02000569.1/43583-43659 39946:Oryza sativa
Indica Group
Length = 77
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 5 agtactccctccatcccaaaata 27
|||||||||||||||||||||||
Sbjct: 75 agtactccctccatcccaaaata 53
>RF01058;MIR806;AACV01004692.1/2655-2900 39947:Oryza sativa
Japonica Group
Length = 246
Score = 44.1 bits (22), Expect = 0.001
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 6 gtactccctccatcccaaaataagtg 31
||||||||||| ||||||||||||||
Sbjct: 1 gtactccctccgtcccaaaataagtg 26
>RF01058;MIR806;AP008213.1/8364293-8364055 39947:Oryza sativa
Japonica Group
Length = 239
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 gtactccctccatcccaaaata 27
||||||||||||||||||||||
Sbjct: 1 gtactccctccatcccaaaata 22
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 44.1 bits (22), Expect = 0.001
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 6 gtactccctccatcccaaaataagtg 31
||||||||||| ||||||||||||||
Sbjct: 102 gtactccctccgtcccaaaataagtg 77
>RF00906;MIR1122;AP004862.3/965-874 39947:Oryza sativa Japonica
Group
Length = 92
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 7 tactccctccatcccaaaataa 28
||||||||||||||||||||||
Sbjct: 88 tactccctccatcccaaaataa 67
>RF00906;MIR1122;AAAA02004484.1/27911-27847 39946:Oryza sativa
Indica Group
Length = 65
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 6 gtactccctccatcccaaaata 27
||||||||||||||||||||||
Sbjct: 62 gtactccctccatcccaaaata 41
>RF00906;MIR1122;AL845344.4/40945-41080 4530:Oryza sativa (rice)
Length = 136
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 7 tactccctccatcccaaaataa 28
||||||||||||||||||||||
Sbjct: 132 tactccctccatcccaaaataa 111
>RF00906;MIR1122;AACV01018737.1/24214-24370 39947:Oryza sativa
Japonica Group
Length = 157
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 6 gtactccctccatcccaaaata 27
||||||||||||||||||||||
Sbjct: 154 gtactccctccatcccaaaata 133
>RF00906;MIR1122;AP003508.3/31246-31125 39947:Oryza sativa Japonica
Group
Length = 122
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 7 tactccctccatcccaaaataa 28
||||||||||||||||||||||
Sbjct: 118 tactccctccatcccaaaataa 97
