miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;DJ023121.1/176-54 4513:Hordeum vulgare
Length = 123
Score = 228 bits (115), Expect = 2e-59
Identities = 121/123 (98%)
Strand = Plus / Plus
Query: 9 cagatactccctccgtcctaaaattcttgtcttagatttgtctagatatgaatatcaagt 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagatactccctccgtcctaaaattcttgtcttagatttgtctagatatgaatatcaagt 60
Query: 69 atttagatacattcatttctagataaacctaatacaagaattttaaaacggagaaagtat 128
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 61 atttagatacattcatttctagataaacctaatacaagaattttgagacggagaaagtat 120
Query: 129 tat 131
|||
Sbjct: 121 tat 123
>RF00906;MIR1122;FJ374610.1/683-817 4568:Triticum monococcum
Length = 135
Score = 85.7 bits (43), Expect = 1e-16
Identities = 46/47 (97%)
Strand = Plus / Minus
Query: 12 atactccctccgtcctaaaattcttgtcttagatttgtctagatatg 58
||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 132 atactccctccgtcccaaaattcttgtcttagatttgtctagatatg 86
Score = 50.1 bits (25), Expect = 8e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 12 atactccctccgtcctaaaattcttgtcttagatttgtcta 52
||||||| || |||| |||||||||||||||||||| ||||
Sbjct: 4 atactccttctgtcccaaaattcttgtcttagatttttcta 44
Score = 44.1 bits (22), Expect = 5e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 71 ttagatacattcatttctagataaacctaatacaagaatttt 112
|||||||||| ||| |||||| ||| |||| |||||||||||
Sbjct: 75 ttagatacatccatatctagacaaatctaagacaagaatttt 116
>RF00906;MIR1122;AP009567.1/9225-9090 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 136
Score = 83.8 bits (42), Expect = 6e-16
Identities = 48/50 (96%)
Strand = Plus / Plus
Query: 12 atactccctccgtcctaaaattcttgtcttagatttgtctagatatgaat 61
|||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 4 atactccctctgtcataaaattcttgtcttagatttgtctagatatgaat 53
Score = 58.0 bits (29), Expect = 3e-08
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 12 atactccctccgtcctaaaattcttgtcttagatttgtcta 52
|||||||||||||| ||||| ||||||||||| ||||||||
Sbjct: 133 atactccctccgtcttaaaaatcttgtcttaggtttgtcta 93
Score = 54.0 bits (27), Expect = 5e-07
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 71 ttagatacattcatttctagataaacctaatacaagaatttta 113
|||||||||||||| |||||| ||| |||| ||||||||||||
Sbjct: 61 ttagatacattcatatctagacaaatctaagacaagaatttta 19
>RF00906;MIR1122;EU096089.1/14944-15085 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 142
Score = 83.8 bits (42), Expect = 6e-16
Identities = 48/50 (96%)
Strand = Plus / Plus
Query: 12 atactccctccgtcctaaaattcttgtcttagatttgtctagatatgaat 61
||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 4 atactccctccgtcccaaacttcttgtcttagatttgtctagatatgaat 53
Score = 65.9 bits (33), Expect = 1e-10
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 12 atactccctccgtcctaaaattcttgtcttagatttgtcta 52
||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 139 atactccctccgtcccaaaattcttgtcttaggtttgtcta 99
>RF00906;MIR1122;AJ704455.1/466-601 4513:Hordeum vulgare
Length = 136
Score = 81.8 bits (41), Expect = 2e-15
Identities = 47/49 (95%)
Strand = Plus / Plus
Query: 13 tactccctccgtcctaaaattcttgtcttagatttgtctagatatgaat 61
|||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 5 tactccctccgtcccaaaattcttgtcttacatttgtctagatatgaat 53
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 13 tactccctccgtcctaaaattcttgtctta 42
|||||||||||||| |||||||||||||||
Sbjct: 132 tactccctccgtcccaaaattcttgtctta 103
>RF00906;MIR1122;DQ890018.1/183-48 77009:Hordeum vulgare subsp.
spontaneum
Length = 136
Score = 77.8 bits (39), Expect = 3e-14
Identities = 42/43 (97%)
Strand = Plus / Minus
Query: 12 atactccctccgtcctaaaattcttgtcttagatttgtctaga 54
|||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 133 atactccctccgtcctaaaattcttgtcttagctttgtctaga 91
Score = 75.8 bits (38), Expect = 1e-13
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 12 atactccctccgtcctaaaattcttgtcttagatttgtctagatatgaat 61
||||||||||||| | |||||||||||||||||||||| |||||||||||
Sbjct: 4 atactccctccgttccaaaattcttgtcttagatttgtttagatatgaat 53
Score = 44.1 bits (22), Expect = 5e-04
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 72 tagatacattcatttctagataaacctaatacaagaattttaaaacggag 121
||||||||||||| |||| | ||| |||| ||||||||||| |||||||
Sbjct: 60 tagatacattcatatctaaacaaatctaagacaagaattttggaacggag 11
>RF00906;MIR1122;DQ890004.1/48-183 4513:Hordeum vulgare
Length = 136
Score = 77.8 bits (39), Expect = 3e-14
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 12 atactccctccgtcctaaaattcttgtcttagatttgtctaga 54
|||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 4 atactccctccgtcctaaaattcttgtcttagctttgtctaga 46
Score = 67.9 bits (34), Expect = 3e-11
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 12 atactccctccgtcctaaaattcttgtcttagatttgtctagatatgaat 61
||||| ||||||| | |||||||||||||||||||||| |||||||||||
Sbjct: 133 atactacctccgttccaaaattcttgtcttagatttgtttagatatgaat 84
Score = 56.0 bits (28), Expect = 1e-07
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 66 agtatttagatacattcatttctagataaacctaatacaagaatttta 113
||||||||||||||| ||||||||| ||| |||| ||||||||||||
Sbjct: 66 agtatttagatacatcaatttctagacaaagctaagacaagaatttta 19
Score = 44.1 bits (22), Expect = 5e-04
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 72 tagatacattcatttctagataaacctaatacaagaattttaaaacggag 121
||||||||||||| |||| | ||| |||| ||||||||||| |||||||
Sbjct: 77 tagatacattcatatctaaacaaatctaagacaagaattttggaacggag 126
>RF00906;MIR1122;AF277239.1/1056-1190 37679:Heteranthelium piliferum
Length = 135
Score = 77.8 bits (39), Expect = 3e-14
Identities = 47/50 (94%)
Strand = Plus / Minus
Query: 12 atactccctccgtcctaaaattcttgtcttagatttgtctagatatgaat 61
||||||||||||||| |||||||| ||||||||||||| |||||||||||
Sbjct: 132 atactccctccgtcccaaaattctngtcttagatttgtttagatatgaat 83
Score = 65.9 bits (33), Expect = 1e-10
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 12 atactccctccgtcctaaaattcttgtcttagatttgtcta 52
||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 4 atactccctccgtcccaaaattcttgtcatagatttgtcta 44
>RF00906;MIR1122;AF427791.1/222786-222921 4513:Hordeum vulgare
Length = 136
Score = 73.8 bits (37), Expect = 5e-13
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 13 tactccctccgtcctaaaattcttgtcttagatttgtctagatatgaat 61
|||||||||||||| |||||| ||||||||||||||| |||||||||||
Sbjct: 5 tactccctccgtcccaaaattattgtcttagatttgtttagatatgaat 53
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 12 atactccctccgtcctaaaattcttgtctta 42
||||||||| ||||| |||||||||||||||
Sbjct: 133 atactcccttcgtcccaaaattcttgtctta 103
>RF00906;MIR1122;X73528.1/281-181 4565:Triticum aestivum (bread
wheat)
Length = 101
Score = 71.9 bits (36), Expect = 2e-12
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 13 tactccctccgtcctaaaattcttgtcttagatttgtctagata 56
|||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 97 tactccctccatcttaaaattcttgtcttagatttgtctagata 54
Score = 58.0 bits (29), Expect = 3e-08
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 12 atactccctccgtcctaaaattcttgtcttagatttgtctagata 56
||||||||| ||| | |||||||||||||||||||||||| ||||
Sbjct: 4 atactcccttcgttccaaaattcttgtcttagatttgtcttgata 48
>RF00906;MIR1122;AM932686.1/57613-57747 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 71.9 bits (36), Expect = 2e-12
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 13 tactccctccgtcctaaaattcttgtcttagatttgtctagata 56
||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 5 tactccctcggtcccaaaattcttgtcttagatttgtctagata 48
Score = 63.9 bits (32), Expect = 5e-10
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 13 tactccctccgtcctaaaattcttgtcttagatttgtctagata 56
||||||||| |||| ||| |||||||||||||||||||||||||
Sbjct: 131 tactccctctgtcccaaatttcttgtcttagatttgtctagata 88
>RF00906;MIR1122;AY821733.1/621-487 4568:Triticum monococcum
Length = 135
Score = 71.9 bits (36), Expect = 2e-12
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 13 tactccctccgtcctaaaattcttgtcttagatttgtcta 52
|||||||||||||| |||||||||||||||||||||||||
Sbjct: 5 tactccctccgtcccaaaattcttgtcttagatttgtcta 44
Score = 58.0 bits (29), Expect = 3e-08
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 12 atactccctccgtcctaaaattcttgtcttagatttgtctagata 56
||||| ||||||| | ||||||||||||||||||||| |||||||
Sbjct: 132 atacttcctccgttccaaaattcttgtcttagatttgcctagata 88
>RF00906;MIR1122;AY887089.1/1801-1936 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 136
Score = 67.9 bits (34), Expect = 3e-11
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 9 cagatactccctccgtcctaaaattcttgtcttagatttgtctagatatg 58
|||||||||||||||||| |||||||||||||||||| | | ||||||||
Sbjct: 136 cagatactccctccgtcccaaaattcttgtcttagatgtttttagatatg 87
Score = 44.1 bits (22), Expect = 5e-04
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 13 tactccctccgtcctaaaattcttgtcttagatttgtctagatatg 58
||||||||||||| |||||| |||| || |||||||||||||||
Sbjct: 5 tactccctccgtctcaaaattattgttttgaatttgtctagatatg 50
>RF00906;MIR1122;EU660895.1/53244-53110 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 65.9 bits (33), Expect = 1e-10
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 12 atactccctccgtcctaaaattcttgtcttagatttgtctagata 56
|||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 4 atactccctccgtctcaaaattcttgtcttacatttgtctagata 48
Score = 63.9 bits (32), Expect = 5e-10
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 13 tactccctccgtcctaaaattcttgtcttagatttgtcta 52
|||||||||| ||| |||||||||||||||||||||||||
Sbjct: 131 tactccctccatcccaaaattcttgtcttagatttgtcta 92
>RF00906;MIR1122;AF254799.1/46723-46588 4513:Hordeum vulgare
Length = 136
Score = 65.9 bits (33), Expect = 1e-10
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 13 tactccctccgtcctaaaattcttgtcttagatttgtctagatatgaat 61
|||||| ||||||| ||||||||||||||| ||||||||| ||||||||
Sbjct: 5 tactccttccgtcccaaaattcttgtcttaaatttgtctatatatgaat 53
Score = 50.1 bits (25), Expect = 8e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 12 atactccctccgtcctaaaattcttgtcttagatttgtcta 52
||||||||||||| | |||||||||||||||| |||||||
Sbjct: 133 atactccctccgttccaaaattcttgtcttagcattgtcta 93
>RF00906;MIR1122;EU626553.1/30213-30109 4572:Triticum urartu
Length = 105
Score = 63.9 bits (32), Expect = 5e-10
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 13 tactccctccgtcctaaaattcttgtcttagatttgtctagata 56
|||||||||||||| |||||||||||||||||||| | ||||||
Sbjct: 101 tactccctccgtcccaaaattcttgtcttagatttatttagata 58
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 28 aaaattcttgtcttagatttgtctagata 56
|||||||||||||||||||| ||||||||
Sbjct: 19 aaaattcttgtcttagatttatctagata 47
>RF00906;MIR1122;DQ145528.1/676-542 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 135
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 23 gtcctaaaattcttgtcttagatttgtctagatatgaat 61
|||| ||||||||||||||||||||||||| ||||||||
Sbjct: 15 gtcccaaaattcttgtcttagatttgtctaaatatgaat 53
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 66 agtatttagatacattcatttctaga 91
||||||||||||||| ||||||||||
Sbjct: 71 agtatttagatacatccatttctaga 96
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 13 tactccctccgtcctaaaattcttgtctta 42
||||| |||||||| |||||||||||||||
Sbjct: 131 tactctctccgtcccaaaattcttgtctta 102
>RF00906;MIR1122;AY485644.1/84291-84425 4568:Triticum monococcum
Length = 135
Score = 60.0 bits (30), Expect = 8e-09
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 13 tactccctccgtcctaaaattcttgtcttagatttgtctagatatg 58
|||||||||||||| |||||| |||||||| ||||||||| |||||
Sbjct: 5 tactccctccgtcccaaaattgttgtcttaaatttgtctaaatatg 50
Score = 50.1 bits (25), Expect = 8e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 16 tccctccgtcctaaaattcttgtcttagatttgtctagata 56
||||||| ||| ||||||||||||||| |||||| ||||||
Sbjct: 128 tccctccatcccaaaattcttgtcttacatttgtttagata 88
>RF00906;MIR1122;EU660901.1/93085-92951 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 56.0 bits (28), Expect = 1e-07
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 13 tactccctccgtcctaaaattcttgtcttagatttgtcta 52
||||| ||||||||| |||||||||||||| |||||||||
Sbjct: 5 tactcgctccgtcctgaaattcttgtcttaaatttgtcta 44
Score = 56.0 bits (28), Expect = 1e-07
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 13 tactccctccgtcctaaaattcttgtcttagatttgtctagata 56
|||||||||||||| ||||||||||| ||| ||||||||||||
Sbjct: 131 tactccctccgtcccaaaattcttgttgtagctttgtctagata 88
>RF00906;MIR1122;EF540321.1/52965-52831 4571:Triticum turgidum
Length = 135
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 17 ccctccgtcctaaaattcttgtcttagatttgtcta 52
|||||||||| ||||||||||||||| |||||||||
Sbjct: 127 ccctccgtcccaaaattcttgtcttaaatttgtcta 92
Score = 50.1 bits (25), Expect = 8e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 16 tccctccgtcctaaaattcttgtcttagatttgtctagata 56
||||||| ||| ||||||||||||||| |||||| ||||||
Sbjct: 8 tccctccatcccaaaattcttgtcttacatttgtttagata 48
>RF00906;MIR1122;AY853252.1/33762-33628 4513:Hordeum vulgare
Length = 135
Score = 56.0 bits (28), Expect = 1e-07
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 11 gatactccctccgtcctaaaattcttgtcttagatttgtctaga 54
|||||||||||| | | |||||||||||||||| ||||||||||
Sbjct: 133 gatactccctccattccaaaattcttgtcttagctttgtctaga 90
Score = 54.0 bits (27), Expect = 5e-07
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 66 agtatttagatacattcatttctagataaacctaatacaagaatttt 112
||||||||||||||| || ||||||| ||| |||| |||||||||||
Sbjct: 70 agtatttagatacatccagttctagacaaagctaagacaagaatttt 116
Score = 50.1 bits (25), Expect = 8e-06
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 13 tactccctccgtcctaaaattcttgtcttagatttgtctagatatgaat 61
||||||||||||| |||||||||| |||| |||||| |||||| ||||
Sbjct: 5 tactccctccgtctcaaaattcttgccttatatttgtttagatacgaat 53
>RF00906;MIR1122;AF459639.1/191055-190921 4568:Triticum monococcum
Length = 135
Score = 48.1 bits (24), Expect = 3e-05
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 13 tactccctccgtcctaaaattcttgtcttagatttgtctagata 56
|||||||||||| | || | |||||||||||||||||||||||
Sbjct: 5 tactccctccgttccgaattacttgtcttagatttgtctagata 48
Score = 48.1 bits (24), Expect = 3e-05
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 13 tactccctccgtcctaaaattcttgtcttagatttgtctagata 56
|||||||||||| | ||| | |||||||| ||||||||||||||
Sbjct: 131 tactccctccgttccaaattacttgtcttggatttgtctagata 88
>RF00906;MIR1122;DQ123819.1/2832-2966 4571:Triticum turgidum
Length = 135
Score = 48.1 bits (24), Expect = 3e-05
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 13 tactccctccgtcctaaaattcttgtcttagatttgtctagata 56
|||||||||||| || || | ||||||||| |||||||||||||
Sbjct: 5 tactccctccgttctgaattacttgtcttaaatttgtctagata 48
Score = 48.1 bits (24), Expect = 3e-05
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 13 tactccctccgtcctaaaattcttgtcttagatttgtctagata 56
|||||||||||| | ||| | |||||||| ||||||||||||||
Sbjct: 131 tactccctccgttccaaattacttgtcttcgatttgtctagata 88
>RF00906;MIR1122;AY235466.1/780-656 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 9 cagatactccctccgtcctaaaattcttgtcttaga 44
|||||||||||||||||| ||||| |||||| ||||
Sbjct: 125 cagatactccctccgtcccaaaatacttgtcgtaga 90
>RF00906;MIR1122;AY853252.1/217307-217173 4513:Hordeum vulgare
Length = 135
Score = 48.1 bits (24), Expect = 3e-05
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 13 tactccctccgtcctaaaattcttgtcttagatttgtctagata 56
|||| ||||||||| ||||||||||||| ||||| ||||||||
Sbjct: 131 tactacctccgtcccaaaattcttgtctaggatttatctagata 88
>RF00906;MIR1122;AAAA02007993.1/45532-45643 39946:Oryza sativa
Indica Group
Length = 112
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 9 cagatactccctccgtcctaaaat 32
||||||||||||||||||||||||
Sbjct: 112 cagatactccctccgtcctaaaat 89
>RF00906;MIR1122;EU862588.1/607-710 4516:Hordeum bulbosum
Length = 104
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 18 cctccgtcctaaaattcttgtcttagatttgtctagata 56
||||||||| |||| |||||||||||||| ||||||||
Sbjct: 95 cctccgtcccaaaaagcttgtcttagatttatctagata 57
>RF00906;MIR1122;AAAA02020856.1/51643-51799 39946:Oryza sativa
Indica Group
Length = 157
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 gatactccctccgtcctaaaat 32
||||||||||||||||||||||
Sbjct: 3 gatactccctccgtcctaaaat 24
>RF00906;MIR1122;AC135864.5/73183-73340 39947:Oryza sativa Japonica
Group
Length = 158
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 11 gatactccctccgtcctaaaat 32
||||||||||||||||||||||
Sbjct: 156 gatactccctccgtcctaaaat 135
