miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AK252095.1/1820-1925 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 106
Score = 178 bits (90), Expect = 1e-44
Identities = 102/106 (96%)
Strand = Plus / Minus
Query: 5 ggcatactccctctgtcccacaataagtgtcacaaatttataactaaatgagtacaaatt 64
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 106 ggcatactccctctgtcccaaaataagtgtcacaaatttataactaaattagtacaaatt 47
Query: 65 ttatactaaatcagtgacacttattctgatacggagggagtacaaa 110
|||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 46 ttatactaaatcagcgacacttattttgatacggagggagtacaaa 1
>RF00906;MIR1122;EU282656.1/645-750 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 106
Score = 87.7 bits (44), Expect = 3e-17
Identities = 83/96 (86%)
Strand = Plus / Minus
Query: 9 tactccctctgtcccacaataagtgtcacaaatttataactaaatgagtacaaattttat 68
||||||||| |||||| |||||||||| ||||||||||| ||| ||||||||||||||
Sbjct: 102 tactccctcggtcccaaaataagtgtcgtaaatttataaccaaactagtacaaattttat 43
Query: 69 actaaatcagtgacacttattctgatacggagggag 104
||||||| | |||||| ||| ||| ||||||||||
Sbjct: 42 actaaatgggcgacactcattttgagacggagggag 7
>RF00906;MIR1122;EU282251.1/1314-1209 52152:Elymus repens
Length = 106
Score = 75.8 bits (38), Expect = 1e-13
Identities = 83/98 (84%)
Strand = Plus / Plus
Query: 9 tactccctctgtcccacaataagtgtcacaaatttataactaaatgagtacaaattttat 68
||||||||| |||||| |||||||||| |||||||| ||||| | ||||||||| | ||
Sbjct: 5 tactccctccgtcccaaaataagtgtcgcaaatttagtactaagttagtacaaatataat 64
Query: 69 actaaatcagtgacacttattctgatacggagggagta 106
|||| | ||| |||||||||| || ||||||||||||
Sbjct: 65 actagagcagcgacacttattttgggacggagggagta 102
>RF00906;MIR1122;DQ900687.1/24296-24401 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 106
Score = 56.0 bits (28), Expect = 1e-07
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 47 actaaatgagtacaaattttatactaaatcagtgacacttattctgatacggagggagta 106
|||||||||||||||||||| ||||| |||| |||||||||| | ||||||||||||
Sbjct: 43 actaaatgagtacaaattttgtactagatcaacgacacttattttaggacggagggagta 102
>RF00906;MIR1122;AK249769.1/2180-2285 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 106
Score = 52.0 bits (26), Expect = 2e-06
Identities = 68/82 (82%)
Strand = Plus / Plus
Query: 8 atactccctctgtcccacaataagtgtcacaaatttataactaaatgagtacaaatttta 67
|||||||||| ||| | ||||||||||||||||||| | ||| | |||| ||||||
Sbjct: 4 atactccctccgtcttaaaataagtgtcacaaatttagtattaagttagtataaatttag 63
Query: 68 tactaaatcagtgacacttatt 89
||||||| ||| ||||||||||
Sbjct: 64 tactaaaacagcgacacttatt 85
>RF01058;MIR806;AAAA02022366.1/8512-8275 39946:Oryza sativa Indica
Group
Length = 238
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 atactccctctgtcccacaata 29
||||||||||||||||||||||
Sbjct: 1 atactccctctgtcccacaata 22
>RF00906;MIR1122;EF560592.1/17009-17118 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 110
Score = 44.1 bits (22), Expect = 4e-04
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 65 ttatactaaatcagtgacacttattctgatacggagggagta 106
|||||||||||||| |||||||||| || ||||| ||||||
Sbjct: 46 ttatactaaatcagcgacacttattttggaacggaaggagta 5
>RF00906;MIR1122;FJ491378.1/4581-4466 4550:Secale cereale (rye)
Length = 116
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 8 atactccctctgtcccacaataagtg 33
||||||||||||||||| ||||||||
Sbjct: 4 atactccctctgtcccaaaataagtg 29
>RF00906;MIR1122;FJ477093.1/40908-41001 4513:Hordeum vulgare
Length = 94
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 8 atactccctctgtcccacaataagtg 33
||||||||||||||||| ||||||||
Sbjct: 4 atactccctctgtcccaaaataagtg 29
