miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 117 bits (59), Expect = 4e-26
Identities = 90/99 (90%), Gaps = 1/99 (1%)
Strand = Plus / Plus
Query: 22 atactcccttcgttccaaaataagtg-ctcaagcttagtacaactttgtactaaaattaa 80
||||||||| ||| |||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 4 atactccctccgtcccaaaataagtgtctcaagcttagtacaactttgtactaaagttaa 63
Query: 81 tacaaagttaagacaattattttaggacaaagggagtag 119
||||||||| ||||| ||||||| |||| |||||||||
Sbjct: 64 tacaaagttgagacatttattttgggacggagggagtag 102
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 109 bits (55), Expect = 1e-23
Identities = 89/99 (89%), Gaps = 1/99 (1%)
Strand = Plus / Plus
Query: 22 atactcccttcgttccaaaataagtg-ctcaagcttagtacaactttgtactaaaattaa 80
||||||||| ||| |||||||||||| ||||||||||||||||| |||||||||| ||||
Sbjct: 4 atactccctccgtcccaaaataagtgtctcaagcttagtacaaccttgtactaaagttaa 63
Query: 81 tacaaagttaagacaattattttaggacaaagggagtag 119
||||||||| ||||| ||||||| |||| |||||||||
Sbjct: 64 tacaaagttgagacatttattttgggacggagggagtag 102
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 97.6 bits (49), Expect = 4e-20
Identities = 86/97 (88%), Gaps = 1/97 (1%)
Strand = Plus / Plus
Query: 23 tactcccttcgttccaaaataagtg-ctcaagcttagtacaactttgtactaaaattaat 81
|||||||| ||| ||||||||||| ||||||| |||||||||||||||||||| ||| |
Sbjct: 5 tactccctccgtctcaaaataagtgtctcaagcctagtacaactttgtactaaagttagt 64
Query: 82 acaaagttaagacaattattttaggacaaagggagta 118
|||||||||||||| ||||||| |||| ||||||||
Sbjct: 65 acaaagttaagacacttattttgggacggagggagta 101
>RF00906;MIR1122;AY943294.1/62260-62364 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 85.7 bits (43), Expect = 1e-16
Identities = 77/87 (88%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 23 tactcccttcgttccaaaataagtg-ctcaagcttagtacaactttgtactaaaattaat 81
|||||||| |||||||||||||||| || ||||||| ||||| ||||||||||| ||||
Sbjct: 5 tactccctccgttccaaaataagtgtcttaagcttaatacaattttgtactaaatctaat 64
Query: 82 acaaagttaagacaattattttaggac 108
|||||||| ||||| ||||||| ||||
Sbjct: 65 acaaagttgagacagttattttgggac 91
>RF00906;MIR1122;AF488415.1/78603-78755 4568:Triticum monococcum
Length = 153
Score = 77.8 bits (39), Expect = 4e-14
Identities = 64/71 (90%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 25 ctcccttcgttccaaaataagtg-ctcaagcttagtacaactttgtactaaaattaatac 83
|||||||||| |||||||||||| ||||| ||||||||||||||| |||||| ||| |||
Sbjct: 7 ctcccttcgtcccaaaataagtgtctcaaccttagtacaactttgcactaaatttagtac 66
Query: 84 aaagttaagac 94
|||||| ||||
Sbjct: 67 aaagttgagac 77
Score = 69.9 bits (35), Expect = 9e-12
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 48 ctcaagcttagtacaactttgtactaaaattaatacaaagttaagacaattattttagga 107
||||| |||||||||||||||||||||| ||| |||||| || ||||| ||||||| |||
Sbjct: 79 ctcaaccttagtacaactttgtactaaagttagtacaaacttgagacagttattttggga 138
Query: 108 caaagggagta 118
| ||||||||
Sbjct: 139 cggagggagta 149
>RF00906;MIR1122;AF474373.1/50497-50394 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 104
Score = 71.9 bits (36), Expect = 2e-12
Identities = 73/84 (86%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 21 aatactcccttcgttccaaaataagtg-ctcaagcttagtacaactttgtactaaaatta 79
||||||| || ||| ||||||||| || ||||||| |||||||||||||||||| || ||
Sbjct: 3 aatactcactccgtcccaaaataactgtctcaagcctagtacaactttgtactagaacta 62
Query: 80 atacaaagttaagacaattatttt 103
||||||||| ||||| |||||||
Sbjct: 63 gtacaaagttgagacacttatttt 86
>RF00906;MIR1122;DQ445236.1/13423-13319 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 71.9 bits (36), Expect = 2e-12
Identities = 73/84 (86%), Gaps = 1/84 (1%)
Strand = Plus / Minus
Query: 21 aatactcccttcgttccaaaataagtg-ctcaagcttagtacaactttgtactaaaatta 79
|||||||||| ||||||||||||| | |||||||||||||||||||||||||| | ||
Sbjct: 103 aatactccctccgttccaaaataactatctcaagcttagtacaactttgtactagagcta 44
Query: 80 atacaaagttaagacaattatttt 103
|||||| || ||||| |||||||
Sbjct: 43 gtacaaatttgagacacttatttt 20
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 22 atactcccttcgttccaaaataagtg 47
||||||||| ||||||||||||||||
Sbjct: 4 atactccctccgttccaaaataagtg 29
>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
Length = 112
Score = 71.9 bits (36), Expect = 2e-12
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 52 agcttagtacaactttgtactaaaattaatacaaagttaagacaattatttt 103
|||||||||||||||||||||||| ||| ||||||||| ||||| |||||||
Sbjct: 42 agcttagtacaactttgtactaaagttagtacaaagttgagacacttatttt 93
>RF00906;MIR1122;AJ249141.1/1014-910 4513:Hordeum vulgare
Length = 105
Score = 69.9 bits (35), Expect = 9e-12
Identities = 60/67 (89%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 38 aaaataagtg-ctcaagcttagtacaactttgtactaaaattaatacaaagttaagacaa 96
|||||||||| || ||||||||||||||||||||||| | |||||||||||| |||||
Sbjct: 20 aaaataagtgtcttaagcttagtacaactttgtactagagctaatacaaagttgagacag 79
Query: 97 ttatttt 103
|||||||
Sbjct: 80 ttatttt 86
>RF00906;MIR1122;AY133251.1/901-1005 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 67.9 bits (34), Expect = 3e-11
Identities = 83/98 (84%), Gaps = 1/98 (1%)
Strand = Plus / Plus
Query: 22 atactcccttcgttccaaaataagtg-ctcaagcttagtacaactttgtactaaaattaa 80
||||||||| |||||||||||||||| || ||| |||||||| ||||||||| | ||
Sbjct: 4 atactccctccgttccaaaataagtgtcttgagcgtagtacaattttgtactagagctag 63
Query: 81 tacaaagttaagacaattattttaggacaaagggagta 118
||||||||| ||||| ||||||| |||| ||||||||
Sbjct: 64 tacaaagttgagacagttattttgggacggagggagta 101
>RF00906;MIR1122;AJ400714.1/3663-3767 4565:Triticum aestivum (bread
wheat)
Length = 105
Score = 65.9 bits (33), Expect = 1e-10
Identities = 49/53 (92%), Gaps = 1/53 (1%)
Strand = Plus / Minus
Query: 22 atactcccttcgttccaaaataagtg-ctcaagcttagtacaactttgtacta 73
||||||||| ||| |||||||||||| ||||| ||||||||||||||||||||
Sbjct: 102 atactccctccgtcccaaaataagtgtctcaaccttagtacaactttgtacta 50
>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 65.9 bits (33), Expect = 1e-10
Identities = 82/97 (84%), Gaps = 1/97 (1%)
Strand = Plus / Plus
Query: 23 tactcccttcgttccaaaataagtg-ctcaagcttagtacaactttgtactaaaattaat 81
|||||||| ||| |||||||||||| |||||||||||| || ||||||||| | || |
Sbjct: 5 tactccctccgtcccaaaataagtgtctcaagcttagtgtaattttgtactacagctagt 64
Query: 82 acaaagttaagacaattattttaggacaaagggagta 118
|||||||| ||||| ||||||| |||| ||||||||
Sbjct: 65 acaaagttgagacacttattttgggacggagggagta 101
>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum (bread
wheat)
Length = 104
Score = 60.0 bits (30), Expect = 8e-09
Identities = 83/98 (84%), Gaps = 2/98 (2%)
Strand = Plus / Plus
Query: 22 atactcccttcgttccaaaataagtg-ctcaagcttagtacaactttgtactaaaattaa 80
||||||||| ||| |||||||||||| ||||| |||||||||| ||| ||||| | |||
Sbjct: 4 atactccctccgtcccaaaataagtgtctcaaccttagtacaattttatactagagttag 63
Query: 81 tacaaagttaagacaattattttaggacaaagggagta 118
||||||| | ||||| ||||||| |||| ||||||||
Sbjct: 64 tacaaag-tgagacacttattttgggacggagggagta 100
>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
subsp. dicoccoides
Length = 105
Score = 56.0 bits (28), Expect = 1e-07
Identities = 71/84 (84%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 21 aatactcccttcgttccaaaataagtg-ctcaagcttagtacaactttgtactaaaatta 79
|||||||||| ||| |||||||||||| || ||||||||| || ||||||||| | ||
Sbjct: 3 aatactccctccgtcccaaaataagtgtcttgagcttagtaaaaatttgtactagagata 62
Query: 80 atacaaagttaagacaattatttt 103
||||||||| ||||| |||||||
Sbjct: 63 gtacaaagttgagacacttatttt 86
>RF00906;MIR1122;AF521177.1/206122-206018 4513:Hordeum vulgare
Length = 105
Score = 56.0 bits (28), Expect = 1e-07
Identities = 71/84 (84%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 21 aatactcccttcgttccaaaataagtgct-caagcttagtacaactttgtactaaaatta 79
|||||||||| | || |||||||| || | || ||||||||||||||||||||| | ||
Sbjct: 3 aatactccctccatttcaaaataattgtttcatgcttagtacaactttgtactagagcta 62
Query: 80 atacaaagttaagacaattatttt 103
||||||||| ||||| |||||||
Sbjct: 63 gtacaaagttgagacatttatttt 86
>RF00906;MIR1122;X83518.1/7301-7197 4513:Hordeum vulgare
Length = 105
Score = 56.0 bits (28), Expect = 1e-07
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 48 ctcaagcttagtacaactttgtactaaaattaatacaaagttaagacaattatttt 103
||||||||||||||||||||||| || | || ||||||||| ||||| |||||||
Sbjct: 31 ctcaagcttagtacaactttgtagtagagctagtacaaagttgagacacttatttt 86
>RF00906;MIR1122;DQ175992.1/50-154 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 54.0 bits (27), Expect = 5e-07
Identities = 70/83 (84%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 38 aaaataagtg-ctcaagcttagtacaactttgtactaaaattaatacaaagttaagacaa 96
|||||||||| || |||||||||| || ||| ||||| | || |||||||||||||||
Sbjct: 20 aaaataagtgtcttaagcttagtataattttatactagagctagaacaaagttaagacaa 79
Query: 97 ttattttaggacaaagggagtag 119
||||||| |||| |||||||||
Sbjct: 80 ttattttgggacggagggagtag 102
>RF00906;MIR1122;DQ995510.1/1615-1718 4513:Hordeum vulgare
Length = 104
Score = 52.0 bits (26), Expect = 2e-06
Identities = 73/86 (84%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 19 ctaatactcccttcgttccaaaataagtg-ctcaagcttagtacaactttgtactaaaat 77
|||||||||||| ||| |||||||| || ||||| ||| |||||||||||||||| |
Sbjct: 1 ctaatactccctccgtctcaaaataactgtctcaa-ctttgtacaactttgtactagagc 59
Query: 78 taatacaaagttaagacaattatttt 103
|| ||||||||| ||||| |||||||
Sbjct: 60 tagtacaaagttgagacagttatttt 85
>RF00906;MIR1122;AJ234485.1/114-218 4513:Hordeum vulgare
Length = 105
Score = 52.0 bits (26), Expect = 2e-06
Identities = 81/98 (82%), Gaps = 1/98 (1%)
Strand = Plus / Plus
Query: 23 tactcccttcgttccaaaataagtg-ctcaagcttagtacaactttgtactaaaattaat 81
|||||||| ||| ||||||||||| || || |||||||||| ||||||||| | || |
Sbjct: 5 tactccctccgtctcaaaataagtgtcttaatcttagtacaattttgtactagagctagt 64
Query: 82 acaaagttaagacaattattttaggacaaagggagtag 119
|||| ||| ||||| ||||||| |||| |||||||||
Sbjct: 65 acaatgttgagacagttattttgagacagagggagtag 102
>RF00906;MIR1122;DQ901436.1/1229-1333 4565:Triticum aestivum (bread
wheat)
Length = 105
Score = 50.1 bits (25), Expect = 8e-06
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 56 tagtacaactttgtactaaaattaatacaaagttaagacaattattttaggac 108
||||||||||||||| |||| || ||||||||| ||||| ||||||| ||||
Sbjct: 67 tagtacaactttgtattaaagctagtacaaagttgagacacttattttgggac 15
>RF00906;MIR1122;AY268139.1/69673-69778 4513:Hordeum vulgare
Length = 106
Score = 50.1 bits (25), Expect = 8e-06
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 59 tacaactttgtactaaaattaatacaaagttaagacaattatttt 103
||||| ||| |||| ||||||||| |||||||||||| |||||||
Sbjct: 43 tacaattttatactgaaattaatataaagttaagacagttatttt 87
>RF00906;MIR1122;AB182945.1/6773-6906 4565:Triticum aestivum (bread
wheat)
Length = 134
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 20 taatactcccttcgttccaaaataagtg 47
||||||||||| ||||||||||||||||
Sbjct: 133 taatactccctccgttccaaaataagtg 106
>RF00906;MIR1122;AAAA02016762.1/20933-20809 39946:Oryza sativa
Indica Group
Length = 125
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 taatactcccttcgttccaaaata 43
||||||||||||||||||||||||
Sbjct: 2 taatactcccttcgttccaaaata 25
>RF00906;MIR1122;AB183299.1/312-404 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 46.1 bits (23), Expect = 1e-04
Identities = 45/51 (88%), Gaps = 1/51 (1%)
Strand = Plus / Plus
Query: 25 ctcccttcgttccaaaataagtg-ctcaagcttagtacaactttgtactaa 74
|||||| ||| |||||||||||| ||||| |||||| |||||||||||||
Sbjct: 7 ctccctccgtcccaaaataagtgtctcaactttagtataactttgtactaa 57
>RF00906;MIR1122;X73528.1/281-181 4565:Triticum aestivum (bread
wheat)
Length = 101
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 aatactcccttcgttccaaaat 42
||||||||||||||||||||||
Sbjct: 3 aatactcccttcgttccaaaat 24
>RF00906;MIR1122;AK249748.1/2677-2573 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 44.1 bits (22), Expect = 5e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 81 tacaaagttaagacaattattttaggacaaagggagta 118
||||||||||||||| ||||||| | ||| ||||||||
Sbjct: 42 tacaaagttaagacagttattttggaacagagggagta 5
>RF00906;MIR1122;AK252392.1/1279-1175 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 44.1 bits (22), Expect = 5e-04
Identities = 80/98 (81%), Gaps = 1/98 (1%)
Strand = Plus / Plus
Query: 22 atactcccttcgttccaaaataagtg-ctcaagcttagtacaactttgtactaaaattaa 80
|||| |||| ||| |||||||||||| || ||||||||||||| ||| ||| | ||
Sbjct: 4 ataccccctccgtcccaaaataagtgtcttaagcttagtacaattttatacatgagctag 63
Query: 81 tacaaagttaagacaattattttaggacaaagggagta 118
||||||||||||||| |||||| |||| ||||||||
Sbjct: 64 tacaaagttaagacagatattttgggacggagggagta 101
>RF00906;MIR1122;AACV01008110.1/23533-23408 39947:Oryza sativa
Japonica Group
Length = 126
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 23 tactcccttcgttccaaaataa 44
||||||||||||||||||||||
Sbjct: 122 tactcccttcgttccaaaataa 101
>RF00906;MIR1122;AP008213.1/28683389-28683301 39947:Oryza sativa
Japonica Group
Length = 89
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 23 tactcccttcgttccaaaataagtgc 48
|||||||| |||||||||||||||||
Sbjct: 85 tactccctccgttccaaaataagtgc 60
