miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AK252095.1/1820-1925 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 106
Score = 91.7 bits (46), Expect = 3e-18
Identities = 58/62 (93%)
Strand = Plus / Plus
Query: 29 tgtactccctccgtctcaaaataagagtcgttgagttagtataaaatttgtactaattta 88
|||||||||||||| |||||||||| |||| ||| |||||||||||||||||||||||||
Sbjct: 3 tgtactccctccgtatcaaaataagtgtcgctgatttagtataaaatttgtactaattta 62
Query: 89 gt 90
||
Sbjct: 63 gt 64
>RF00906;MIR1122;EU282251.1/1314-1209 52152:Elymus repens
Length = 106
Score = 77.8 bits (39), Expect = 4e-14
Identities = 84/99 (84%)
Strand = Plus / Minus
Query: 31 tactccctccgtctcaaaataagagtcgttgagttagtataaaatttgtactaatttagt 90
||||||||||||| ||||||||| |||| || |||||| | ||||||||||| |||||
Sbjct: 102 tactccctccgtcccaaaataagtgtcgctgctctagtattatatttgtactaacttagt 43
Query: 91 acaaaatctgcaacatttattttggaacggatggagtag 129
|| |||| ||| ||| ||||||||| ||||| |||||||
Sbjct: 42 actaaatttgcgacacttattttgggacggagggagtag 4
>RF00906;MIR1122;DQ900687.1/24296-24401 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 106
Score = 67.9 bits (34), Expect = 4e-11
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 31 tactccctccgtctcaaaataagagtcgttgagttagtataaaatttgtactaatttagt 90
||||||||||||| |||||||| |||||||| ||||| |||||||||||| |||||||
Sbjct: 102 tactccctccgtcctaaaataagtgtcgttgatctagtacaaaatttgtactcatttagt 43
Query: 91 ac 92
||
Sbjct: 42 ac 41
>RF00906;MIR1122;EU282656.1/645-750 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 106
Score = 54.0 bits (27), Expect = 6e-07
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 33 ctccctccgtctcaaaataagagtcgttgagttagtataaaatttgtacta 83
|||||||||||||||||| || |||| | ||||||||||||||||||||
Sbjct: 7 ctccctccgtctcaaaatgagtgtcgcccatttagtataaaatttgtacta 57
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 28 atgtactccctccgtctcaaaataag 53
||||||||||||||||||||||||||
Sbjct: 2 atgtactccctccgtctcaaaataag 27
>RF00906;MIR1122;AC148487.14/40672-40806 3880:Medicago truncatula
(barrel medic)
Length = 135
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 28 atgtactccctccgtctcaaaata 51
||||||||||||||||||||||||
Sbjct: 2 atgtactccctccgtctcaaaata 25
>RF00906;MIR1122;AJ234485.1/114-218 4513:Hordeum vulgare
Length = 105
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 30 gtactccctccgtctcaaaataag 53
||||||||||||||||||||||||
Sbjct: 4 gtactccctccgtctcaaaataag 27
>RF00906;MIR1122;AAAA02026943.1/18413-18317 39946:Oryza sativa
Indica Group
Length = 97
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 29 tgtactccctccgtctcaaaataa 52
||||||||||||||||||||||||
Sbjct: 95 tgtactccctccgtctcaaaataa 72
>RF01058;MIR806;AAAA02021561.1/35714-35484 39946:Oryza sativa
Indica Group
Length = 231
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 tactccctccgtctcaaaataag 53
|||||||||||||||||||||||
Sbjct: 2 tactccctccgtctcaaaataag 24
>RF00906;MIR1122;AJ234583.1/157-260 4513:Hordeum vulgare
Length = 104
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 tactccctccgtctcaaaataag 53
|||||||||||||||||||||||
Sbjct: 5 tactccctccgtctcaaaataag 27
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 30 gtactccctccgtctcaaaataa 52
|||||||||||||||||||||||
Sbjct: 101 gtactccctccgtctcaaaataa 79
>RF00906;MIR1122;EU282768.1/632-528 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 31 tactccctccgtctcaaaataag 53
|||||||||||||||||||||||
Sbjct: 101 tactccctccgtctcaaaataag 79
>RF00906;MIR1122;EU282771.1/632-528 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 31 tactccctccgtctcaaaataag 53
|||||||||||||||||||||||
Sbjct: 101 tactccctccgtctcaaaataag 79
>RF00906;MIR1122;EU730897.1/62277-62172 15368:Brachypodium
distachyon
Length = 106
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 71 aaaatttgtactaatttagtacaaaat 97
|||||||||||||| ||||||||||||
Sbjct: 45 aaaatttgtactaacttagtacaaaat 71
>RF00906;MIR1122;FJ581044.1/175385-175266 4538:Oryza glaberrima
(African rice)
Length = 120
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 31 tactccctccgtctcaaaataag 53
|||||||||||||||||||||||
Sbjct: 116 tactccctccgtctcaaaataag 94
>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
subsp. dicoccoides
Length = 105
Score = 44.1 bits (22), Expect = 6e-04
Identities = 49/54 (90%), Gaps = 3/54 (5%)
Strand = Plus / Plus
Query: 31 tactccctccgtctcaaaataagagtcgttgag-ttagtataaaatttgtacta 83
||||||||||||| ||||||||| ||| ||||| |||||| |||||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtc-ttgagcttagta-aaaatttgtacta 56
>RF00906;MIR1122;AJ249141.1/1014-910 4513:Hordeum vulgare
Length = 105
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 31 tactccctccgtctcaaaataa 52
||||||||||||||||||||||
Sbjct: 101 tactccctccgtctcaaaataa 80
>RF00906;MIR1122;AY133251.1/901-1005 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 27 gatgtactccctccgtctcaaaataa 52
||||||||||||||||| ||||||||
Sbjct: 105 gatgtactccctccgtcccaaaataa 80
>RF00906;MIR1122;DQ995510.1/1615-1718 4513:Hordeum vulgare
Length = 104
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 tactccctccgtctcaaaataa 52
||||||||||||||||||||||
Sbjct: 5 tactccctccgtctcaaaataa 26
>RF00906;MIR1122;AAAA02022195.1/27114-27226 39946:Oryza sativa
Indica Group
Length = 113
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 tactccctccgtctcaaaataa 52
||||||||||||||||||||||
Sbjct: 5 tactccctccgtctcaaaataa 26
>RF00906;MIR1122;AAAA02028034.1/27580-27414 39946:Oryza sativa
Indica Group
Length = 167
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 30 gtactccctccgtctcaaaata 51
||||||||||||||||||||||
Sbjct: 4 gtactccctccgtctcaaaata 25
