miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU183492.1/3479-3389 37682:Aegilops tauschii
Length = 91
Score = 99.6 bits (50), Expect = 7e-21
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 39 gtttagataactaaagtaatgatctaaacactcttatatttctttacagagggagtac 96
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 31 gtttagatcactaaagtagtgatctaaacactcttatatttctttacagagggagtac 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 73/87 (83%), Gaps = 3/87 (3%)
Strand = Plus / Minus
Query: 11 gtactccctccgtaac-aaatataagagcgtttagataactaaagtaatgatctaaacac 69
|||||||||| |||| ||||||||||| |||||||| |||| || |||||||||||
Sbjct: 88 gtactccctctgtaaagaaatataagagtgtttagatcactactttagtgatctaaaca- 30
Query: 70 tcttatatttctttacagagggagtac 96
|||| |||| ||||| ||||||||||
Sbjct: 29 -cttacatttatttacggagggagtac 4
>RF00906;MIR1122;DQ995513.1/14600-14508 4513:Hordeum vulgare
Length = 93
Score = 97.6 bits (49), Expect = 3e-20
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 27 aaatataagagcgtttagataactaaagtaatgatctaaacactcttatatttctttaca 86
|||||||||||||||||||| ||| ||||| |||||||||| ||||||||||||||||||
Sbjct: 21 aaatataagagcgtttagatcactgaagtagtgatctaaacgctcttatatttctttaca 80
Query: 87 gaggg 91
|||||
Sbjct: 81 gaggg 85
Score = 73.8 bits (37), Expect = 4e-13
Identities = 61/69 (88%)
Strand = Plus / Minus
Query: 27 aaatataagagcgtttagataactaaagtaatgatctaaacactcttatatttctttaca 86
|||||||||||||||||||| |||| | |||||||||| ||||||||||||||||||
Sbjct: 73 aaatataagagcgtttagatcactacttcagtgatctaaacgctcttatatttctttaca 14
Query: 87 gagggagta 95
|||| ||||
Sbjct: 13 gaggtagta 5
>RF00906;MIR1122;FM164415.1/12272-12364 4513:Hordeum vulgare
Length = 93
Score = 97.6 bits (49), Expect = 3e-20
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 27 aaatataagagcgtttagataactaaagtaatgatctaaacactcttatatttctttaca 86
|||||||||||||| ||||| ||||||||| | ||||||||||||||||||||||||||
Sbjct: 21 aaatataagagcgtctagatcactaaagtagttatctaaacactcttatatttctttacg 80
Query: 87 gagggagta 95
|||||||||
Sbjct: 81 gagggagta 89
Score = 89.7 bits (45), Expect = 7e-18
Identities = 79/89 (88%), Gaps = 1/89 (1%)
Strand = Plus / Minus
Query: 12 tactccctccgtaac-aaatataagagcgtttagataactaaagtaatgatctaaacact 70
|||||||||||||| ||||||||||| ||||||||||||| || ||||||| || ||
Sbjct: 89 tactccctccgtaaagaaatataagagtgtttagataactactttagtgatctagacgct 30
Query: 71 cttatatttctttacagagggagtacaat 99
|||||||||||||||||| ||||||||||
Sbjct: 29 cttatatttctttacagaaggagtacaat 1
>RF00906;MIR1122;AJ302096.1/1385-1477 4573:Aegilops speltoides
Length = 93
Score = 91.7 bits (46), Expect = 2e-18
Identities = 77/86 (89%), Gaps = 1/86 (1%)
Strand = Plus / Minus
Query: 12 tactccctccgtaa-caaatataagagcgtttagataactaaagtaatgatctaaacact 70
|||||||||||||| | |||||||||||||||||| |||||| || |||||||||| ||
Sbjct: 89 tactccctccgtaaactaatataagagcgtttagaatactaaaatagtgatctaaacgct 30
Query: 71 cttatatttctttacagagggagtac 96
|||||||| ||||||||||||||||
Sbjct: 29 cttatattagtttacagagggagtac 4
Score = 52.0 bits (26), Expect = 1e-06
Identities = 72/86 (83%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 11 gtactccctccgtaa-caaatataagagcgtttagataactaaagtaatgatctaaacac 69
|||||||||| |||| | ||||||||||||||||||| |||| || | ||||||| |
Sbjct: 4 gtactccctctgtaaactaatataagagcgtttagatcactattttagtattctaaacgc 63
Query: 70 tcttatatttctttacagagggagta 95
||||||||| ||||| |||||||||
Sbjct: 64 tcttatattagtttacggagggagta 89
>RF00906;MIR1122;AY747601.1/4943-5034 4565:Triticum aestivum
(bread wheat)
Length = 92
Score = 87.7 bits (44), Expect = 3e-17
Identities = 65/72 (90%)
Strand = Plus / Minus
Query: 24 aacaaatataagagcgtttagataactaaagtaatgatctaaacactcttatatttcttt 83
|||||||||||||||||| |||| ||| ||||| ||| |||||| |||||||||||||||
Sbjct: 76 aacaaatataagagcgttcagatcactcaagtagtgacctaaacgctcttatatttcttt 17
Query: 84 acagagggagta 95
|| |||||||||
Sbjct: 16 acggagggagta 5
Score = 48.1 bits (24), Expect = 2e-05
Identities = 74/88 (84%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 12 tactccctccgtaac-aaatataagagcgtttagataactaaagtaatgatctaaacact 70
|||||||||||||| |||||||||||||||||| | |||| | |||||| ||| ||
Sbjct: 5 tactccctccgtaaagaaatataagagcgtttaggtcactacttgagtgatctgaacgct 64
Query: 71 cttatatttctttacagagggagtacaa 98
||||||||| ||||| |||||||||||
Sbjct: 65 cttatatttgtttac-cagggagtacaa 91
>RF00906;MIR1122;EU660903.1/5594-5502 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 87.7 bits (44), Expect = 3e-17
Identities = 78/88 (88%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 11 gtactccctccgtaac-aaatataagagcgtttagataactaaagtaatgatctaaacac 69
|||||||||| |||| ||||||||||||||||||| ||||||||| | ||||||| |
Sbjct: 4 gtactccctcggtaaagaaatataagagcgtttagagcactaaagtagttatctaaatgc 63
Query: 70 tcttatatttctttacagagggagtaca 97
||||||||||||||| ||||||||||||
Sbjct: 64 tcttatatttctttatagagggagtaca 91
Score = 75.8 bits (38), Expect = 1e-13
Identities = 62/70 (88%)
Strand = Plus / Minus
Query: 27 aaatataagagcgtttagataactaaagtaatgatctaaacactcttatatttctttaca 86
|||||||||||| |||||||||||| || || ||||||| |||||||||||||||||
Sbjct: 73 aaatataagagcatttagataactactttagtgctctaaacgctcttatatttctttacc 14
Query: 87 gagggagtac 96
||||||||||
Sbjct: 13 gagggagtac 4
>RF00906;MIR1122;X65606.1/2347-2255 4513:Hordeum vulgare
Length = 93
Score = 87.7 bits (44), Expect = 3e-17
Identities = 78/88 (88%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 9 atgtactccctccgta-acaaatataagagcgtttagataactaaagtaatgatctaaac 67
|||||||||||||||| | |||||||||| |||||||| ||||||||| | |||||||
Sbjct: 2 atgtactccctccgtacagaaatataagaatgtttagatcactaaagtagttatctaaat 61
Query: 68 actcttatatttctttacagagggagta 95
||||||||||||||||||||||||||
Sbjct: 62 gatcttatatttctttacagagggagta 89
Score = 69.9 bits (35), Expect = 6e-12
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 27 aaatataagagcgtttagataactaaagtaatgatctaaacactcttatatttctttaca 86
|||||||||| | |||||||||||| || ||||||||||| |||||||||||| |||
Sbjct: 73 aaatataagatcatttagataactactttagtgatctaaacattcttatatttctgtacg 14
Query: 87 gagggagtaca 97
|||||||||||
Sbjct: 13 gagggagtaca 3
>RF00906;MIR1122;EU200767.1/3655-3563 37682:Aegilops tauschii
Length = 93
Score = 85.7 bits (43), Expect = 1e-16
Identities = 74/83 (89%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 11 gtactccctccgtaa-caaatataagagcgtttagataactaaagtaatgatctaaacac 69
|||||||||| |||| |||||||||| |||||||||| ||||| || |||||||||| |
Sbjct: 4 gtactccctctgtaaacaaatataagggcgtttagatctctaaaatagtgatctaaacgc 63
Query: 70 tcttatatttctttacagaggga 92
|||||||||||||||| ||||||
Sbjct: 64 tcttatatttctttactgaggga 86
Score = 67.9 bits (34), Expect = 2e-11
Identities = 61/70 (87%)
Strand = Plus / Minus
Query: 27 aaatataagagcgtttagataactaaagtaatgatctaaacactcttatatttctttaca 86
|||||||||||||||||||| |||| || ||||||||| | ||||||||| ||||||
Sbjct: 73 aaatataagagcgtttagatcactattttagagatctaaacgcccttatatttgtttaca 14
Query: 87 gagggagtac 96
||||||||||
Sbjct: 13 gagggagtac 4
>RF00906;MIR1122;AY368673.1/832-740 4571:Triticum turgidum
Length = 93
Score = 81.8 bits (41), Expect = 2e-15
Identities = 62/69 (89%)
Strand = Plus / Minus
Query: 28 aatataagagcgtttagataactaaagtaatgatctaaacactcttatatttctttacag 87
||||||||||||||||||| |||||| || ||||| ||||||||||||||| ||||| |
Sbjct: 72 aatataagagcgtttagatcactaaaatagtgatcaaaacactcttatattaatttacgg 13
Query: 88 agggagtac 96
|||||||||
Sbjct: 12 agggagtac 4
Score = 50.1 bits (25), Expect = 6e-06
Identities = 71/85 (83%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 11 gtactccctccgt-aacaaatataagagcgtttagataactaaagtaatgatctaaacac 69
||||||||||||| || |||||||||| |||| ||| |||| || |||||||||| |
Sbjct: 4 gtactccctccgtaaattaatataagagtgttttgatcactattttagtgatctaaacgc 63
Query: 70 tcttatatttctttacagagggagt 94
||||||||| ||||| ||||||||
Sbjct: 64 tcttatattagtttactgagggagt 88
>RF00906;MIR1122;AM932685.1/163196-163288 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 81.8 bits (41), Expect = 2e-15
Identities = 75/85 (88%), Gaps = 1/85 (1%)
Strand = Plus / Minus
Query: 12 tactccctccgtaa-caaatataagagcgtttagataactaaagtaatgatctaaacact 70
||||||||| |||| | |||||||||||| |||||| ||||||||| |||||||| | ||
Sbjct: 89 tactccctctgtaaactaatataagagcgcttagatcactaaagtagtgatctaagcgct 30
Query: 71 cttatatttctttacagagggagta 95
|||||||| |||||||||||||||
Sbjct: 29 cttatattagtttacagagggagta 5
Score = 58.0 bits (29), Expect = 2e-08
Identities = 72/85 (84%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 12 tactccctccgtaa-caaatataagagcgtttagataactaaagtaatgatctaaacact 70
||||||||| |||| | |||||||||||| |||||| |||| || |||||||| | ||
Sbjct: 5 tactccctctgtaaactaatataagagcgcttagatcactactttagtgatctaagcgct 64
Query: 71 cttatatttctttacagagggagta 95
|||||||| |||||||||||||||
Sbjct: 65 cttatattagtttacagagggagta 89
>RF00906;MIR1122;DQ885765.1/4441-4533 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 81.8 bits (41), Expect = 2e-15
Identities = 75/85 (88%), Gaps = 1/85 (1%)
Strand = Plus / Minus
Query: 12 tactccctccgtaac-aaatataagagcgtttagataactaaagtaatgatctaaacact 70
|||||||||||||| |||||||||||| ||||||| ||||||||| |||||| || ||
Sbjct: 89 tactccctccgtaaagaaatataagagcatttagatcactaaagtagtgatctgaatgct 30
Query: 71 cttatatttctttacagagggagta 95
|||||||| |||||||||||||||
Sbjct: 29 cttatattagtttacagagggagta 5
Score = 58.0 bits (29), Expect = 2e-08
Identities = 72/85 (84%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 12 tactccctccgtaa-caaatataagagcgtttagataactaaagtaatgatctaaacact 70
||||||||| |||| | ||||||||||| || |||| |||| || ||||||||| ||
Sbjct: 5 tactccctctgtaaactaatataagagcattcagatcactactttagtgatctaaatgct 64
Query: 71 cttatatttctttacagagggagta 95
||||||||||||||| |||||||||
Sbjct: 65 cttatatttctttacggagggagta 89
>RF00906;MIR1122;X83518.1/7623-7532 4513:Hordeum vulgare
Length = 92
Score = 79.8 bits (40), Expect = 6e-15
Identities = 62/68 (91%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 12 tactccctccgtaa-caaatataagagcgtttagataactaaagtaatgatctaaacact 70
||||||||| |||| | ||||||||||||||||||| ||||||||| |||||||||| ||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttagatcactaaagtagtgatctaaacgct 64
Query: 71 cttatatt 78
||||||||
Sbjct: 65 cttatatt 72
Score = 71.9 bits (36), Expect = 2e-12
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 28 aatataagagcgtttagataactaaagtaatgatctaaacactcttatatttctttacag 87
||||||||||||||||||| |||| || |||||||||| |||||||||| |||||||
Sbjct: 72 aatataagagcgtttagatcactactttagtgatctaaacgctcttatattagtttacag 13
Query: 88 agggagta 95
||||||||
Sbjct: 12 agggagta 5
>RF00906;MIR1122;AF488415.1/103662-103754 4568:Triticum monococcum
Length = 93
Score = 77.8 bits (39), Expect = 3e-14
Identities = 73/83 (87%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 15 tccctccgtaa-caaatataagagcgtttagataactaaagtaatgatctaaacactctt 73
||||||||||| | |||||||||||||||||| ||||||||||||||||||| || ||
Sbjct: 8 tccctccgtaaactaatataagagcgtttagaatactaaagtaatgatctaaatgctttt 67
Query: 74 atatttctttacagagggagtac 96
||||| |||||| |||||||||
Sbjct: 68 atattagtttacaaagggagtac 90
>RF00906;MIR1122;EU660896.1/71755-71663 4572:Triticum urartu
Length = 93
Score = 77.8 bits (39), Expect = 3e-14
Identities = 76/87 (87%), Gaps = 1/87 (1%)
Strand = Plus / Minus
Query: 12 tactccctccgtaa-caaatataagagcgtttagataactaaagtaatgatctaaacact 70
|||||||||||||| | |||||||||||||||||| |||| || |||||||||||||
Sbjct: 89 tactccctccgtaaactaatataagagcgtttagaacactattttagtgatctaaacact 30
Query: 71 cttatatttctttacagagggagtaca 97
|||||||| |||| ||||||||||||
Sbjct: 29 cttatattggtttatagagggagtaca 3
Score = 63.9 bits (32), Expect = 4e-10
Identities = 75/88 (85%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 9 atgtactccctccgt-aacaaatataagagcgtttagataactaaagtaatgatctaaac 67
|||||||||||| | ||| |||||||||| |||||||| |||||| || || |||||||
Sbjct: 2 atgtactccctctataaaccaatataagagtgtttagatcactaaaatagtgttctaaac 61
Query: 68 actcttatatttctttacagagggagta 95
|||||||||| ||||| |||||||||
Sbjct: 62 gctcttatattagtttacggagggagta 89
>RF00906;MIR1122;AJ507214.1/4285-4377 4513:Hordeum vulgare
Length = 93
Score = 77.8 bits (39), Expect = 3e-14
Identities = 57/63 (90%)
Strand = Plus / Minus
Query: 27 aaatataagagcgtttagataactaaagtaatgatctaaacactcttatatttctttaca 86
||||||||||| || ||||| ||||||||| |||||||||| ||||||||||| ||||||
Sbjct: 73 aaatataagagtgtctagatcactaaagtagtgatctaaacgctcttatatttgtttaca 14
Query: 87 gag 89
|||
Sbjct: 13 gag 11
Score = 71.9 bits (36), Expect = 2e-12
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 24 aacaaatataagagcgtttagataactaaagtaatgatctaaacactcttatatttcttt 83
||||||||||||||||||||||| |||| || ||||||| ||||||||||||||||||
Sbjct: 18 aacaaatataagagcgtttagatcactactttagtgatctagacactcttatatttcttt 77
>RF00906;MIR1122;AF277253.1/801-887 58935:Australopyrum velutinum
Length = 87
Score = 77.8 bits (39), Expect = 3e-14
Identities = 75/86 (87%), Gaps = 7/86 (8%)
Strand = Plus / Minus
Query: 11 gtactccctccgtaac-aaatataagagcgtttagataactaaagtaatgatctaaacac 69
|||||||||| |||| |||||||||||||||||||| |||| |||||||||| |
Sbjct: 84 gtactccctctgtaaagaaatataagagcgtttagatcacta------tgatctaaacgc 31
Query: 70 tcttatatttctttacagagggagta 95
||||||||||||||||||||||||||
Sbjct: 30 tcttatatttctttacagagggagta 5
Score = 69.9 bits (35), Expect = 6e-12
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 58 tgatctaaacactcttatatttctttacagagggagtac 96
|||||||||| ||||||||||||||||||||||||||||
Sbjct: 46 tgatctaaacgctcttatatttctttacagagggagtac 84
>RF00906;MIR1122;AM932680.1/146155-146063 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 75.8 bits (38), Expect = 1e-13
Identities = 75/86 (87%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 11 gtactccctccgtaa-caaatataagagcgtttagataactaaagtaatgatctaaacac 69
||||||||||||||| | ||||||||||||||||| | |||||| || ||||||||| |
Sbjct: 4 gtactccctccgtaaactaatataagagcgtttaggtcactaaaatagtgatctaaatgc 63
Query: 70 tcttatatttctttacagagggagta 95
||||||||| |||||||||| ||||
Sbjct: 64 tcttatattagtttacagaggaagta 89
Score = 50.1 bits (25), Expect = 6e-06
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 28 aatataagagcgtttagataactaaagtaatgatctaaacactcttatatttctttacag 87
||||||||||| ||||||| |||| || ||| |||||| |||||||||| ||||| |
Sbjct: 72 aatataagagcatttagatcactattttagtgacctaaacgctcttatattagtttacgg 13
Query: 88 agggagtac 96
|||||||||
Sbjct: 12 agggagtac 4
>RF00906;MIR1122;AB298185.1/20826-20734 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 75.8 bits (38), Expect = 1e-13
Identities = 75/86 (87%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 11 gtactccctccgtaa-caaatataagagcgtttagataactaaagtaatgatctaaacac 69
||||||||||||||| | ||||||| |||||||||| |||||| || ||||||||||
Sbjct: 4 gtactccctccgtaaactaatataaaagcgtttagaatactaaaatagtgatctaaacgt 63
Query: 70 tcttatatttctttacagagggagta 95
||||||||| |||||||||||||||
Sbjct: 64 tcttatattagtttacagagggagta 89
>RF00906;MIR1122;AY133248.1/2807-2899 37682:Aegilops tauschii
Length = 93
Score = 75.8 bits (38), Expect = 1e-13
Identities = 59/66 (89%)
Strand = Plus / Minus
Query: 30 tataagagcgtttagataactaaagtaatgatctaaacactcttatatttctttacagag 89
||||||||||||||||| ||||||||| | |||||||| |||||||||| ||||| |||
Sbjct: 70 tataagagcgtttagatcactaaagtagtaatctaaacgctcttatattaatttacggag 11
Query: 90 ggagta 95
||||||
Sbjct: 10 ggagta 5
Score = 58.0 bits (29), Expect = 2e-08
Identities = 72/85 (84%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 12 tactccctccgtaaca-aatataagagcgtttagataactaaagtaatgatctaaacact 70
|||||||||||||| ||||||||||||||||||| |||| || |||||||||| ||
Sbjct: 5 tactccctccgtaaattaatataagagcgtttagattactactttagtgatctaaacgct 64
Query: 71 cttatatttctttacagagggagta 95
|||||| | |||||||| ||||||
Sbjct: 65 cttatagtagtttacagacggagta 89
>RF00906;MIR1122;AJ400713.1/2799-2707 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 73.8 bits (37), Expect = 4e-13
Identities = 74/85 (87%), Gaps = 1/85 (1%)
Strand = Plus / Minus
Query: 12 tactccctccgtaa-caaatataagagcgtttagataactaaagtaatgatctaaacact 70
|||||||||||||| | ||||||||||||||||||| |||| || ||||||||| ||
Sbjct: 89 tactccctccgtaaactaatataagagcgtttagattactattttagtgatctaaatgct 30
Query: 71 cttatatttctttacagagggagta 95
|||||||| |||||||||||||||
Sbjct: 29 cttatattagtttacagagggagta 5
Score = 65.9 bits (33), Expect = 1e-10
Identities = 73/85 (85%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 12 tactccctccgtaa-caaatataagagcgtttagataactaaagtaatgatctaaacact 70
||||||||| |||| | ||||||||||| ||||||| |||||| || | |||||||| ||
Sbjct: 5 tactccctctgtaaactaatataagagcatttagatcactaaaatagtaatctaaacgct 64
Query: 71 cttatatttctttacagagggagta 95
|||||||| ||||| |||||||||
Sbjct: 65 cttatattagtttacggagggagta 89
>RF00906;MIR1122;AF458279.1/188-280 4568:Triticum monococcum
Length = 93
Score = 71.9 bits (36), Expect = 2e-12
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 28 aatataagagcgtttagataactaaagtaatgatctaaacactcttatatttctttacag 87
||||||||| | ||||||| ||||||||| ||||||||| ||||||||| |||||||
Sbjct: 22 aatataagaccttttagatcactaaagtagtgatctaaaaggtcttatattagtttacag 81
Query: 88 agggagtacaat 99
||||||||||||
Sbjct: 82 agggagtacaat 93
>RF00906;MIR1122;EF540321.1/152068-151976 4571:Triticum turgidum
Length = 93
Score = 69.9 bits (35), Expect = 6e-12
Identities = 75/87 (86%), Gaps = 1/87 (1%)
Strand = Plus / Minus
Query: 10 tgtactccctccgtaa-caaatataagagcgtttagataactaaagtaatgatctaaaca 68
||||||||||| |||| | ||||||| | | ||||||| ||||||||| | |||||||||
Sbjct: 91 tgtactccctctgtaaactaatataaaaacatttagatcactaaagtagtaatctaaaca 32
Query: 69 ctcttatatttctttacagagggagta 95
|||||||||| ||||| |||||||||
Sbjct: 31 ctcttatattagtttacggagggagta 5
Score = 56.0 bits (28), Expect = 9e-08
Identities = 74/88 (84%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 12 tactccctccgtaa-caaatataagagcgtttagataactaaagtaatgatctaaacact 70
|||||||||||||| | |||||||||| |||||||| |||| || ||||||||| |
Sbjct: 5 tactccctccgtaaactaatataagagtgtttagattactactttagtgatctaaatgtt 64
Query: 71 cttatatttctttacagagggagtacaa 98
||||||| ||||||||||||||||||
Sbjct: 65 tttatattagtttacagagggagtacaa 92
>RF00906;MIR1122;EU835198.1/56667-56575 85692:Triticum turgidum
subsp. dicoccoides
Length = 93
Score = 67.9 bits (34), Expect = 2e-11
Identities = 74/86 (86%), Gaps = 1/86 (1%)
Strand = Plus / Minus
Query: 12 tactccctccgtaa-caaatataagagcgtttagataactaaagtaatgatctaaacact 70
||||||||| |||| | ||||||| || |||| || |||||| || |||||||||||||
Sbjct: 89 tactccctctgtaaactaatataaaagtttttaaattactaaactagtgatctaaacact 30
Query: 71 cttatatttctttacagagggagtac 96
|||||||| ||||||||||||||||
Sbjct: 29 cttatattagtttacagagggagtac 4
Score = 44.1 bits (22), Expect = 4e-04
Identities = 71/86 (82%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 11 gtactccctccgtaa-caaatataagagcgtttagataactaaagtaatgatctaaacac 69
|||||||||| |||| | |||||||||| |||||||| |||| || | || |||| ||
Sbjct: 4 gtactccctctgtaaactaatataagagtgtttagatcactagtttagtaatttaaaaac 63
Query: 70 tcttatatttctttacagagggagta 95
| ||||||| |||||||||||||||
Sbjct: 64 ttttatattagtttacagagggagta 89
>RF00906;MIR1122;AM000057.1/1342-1250 4513:Hordeum vulgare
Length = 93
Score = 67.9 bits (34), Expect = 2e-11
Identities = 74/86 (86%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 12 tactccctccgtaa-caaatataagagcgtttagataactaaagtaatgatctaaacact 70
||||||||| |||| | ||||||||||||||||||| ||||||||| || |||||| ||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttagattactaaagtagtgttctaaatgct 64
Query: 71 cttatatttctttacagagggagtac 96
||||||| ||||||| ||||||||
Sbjct: 65 tttatattagtttacagggggagtac 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 60 atctaaacactcttatatttctttacagagggagta 95
|||||||| |||||||||| |||||||||||||||
Sbjct: 40 atctaaacgctcttatattagtttacagagggagta 5
>RF00906;MIR1122;AB178167.1/826-734 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 65.9 bits (33), Expect = 1e-10
Identities = 73/85 (85%), Gaps = 1/85 (1%)
Strand = Plus / Minus
Query: 12 tactccctccgtaa-caaatataagagcgtttagataactaaagtaatgatctaaacact 70
||||||||| |||| | ||||||||||| |||| || | |||| || |||||||||||||
Sbjct: 89 tactccctcggtaaactaatataagagcatttaaatcattaaaatagtgatctaaacact 30
Query: 71 cttatatttctttacagagggagta 95
|||||||| ||||| |||||||||
Sbjct: 29 cttatattagtttacggagggagta 5
Score = 58.0 bits (29), Expect = 2e-08
Identities = 72/85 (84%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 12 tactccctccgt-aacaaatataagagcgtttagataactaaagtaatgatctaaacact 70
|||||||||||| ||| |||||||||| |||||||| |||| ||||||| |||| ||
Sbjct: 5 tactccctccgtaaactaatataagagtgtttagatcactattttaatgatttaaatgct 64
Query: 71 cttatatttctttacagagggagta 95
|||||||| ||||| |||||||||
Sbjct: 65 cttatattagtttaccgagggagta 89
>RF00906;MIR1122;FJ436985.1/28643-28733 4565:Triticum aestivum
(bread wheat)
Length = 91
Score = 63.9 bits (32), Expect = 4e-10
Identities = 75/87 (86%), Gaps = 3/87 (3%)
Strand = Plus / Minus
Query: 11 gtactccctccgtaa-caaatataagagcgtttagataactaaagtaatgatctaaacac 69
||||||||||||||| | ||||||| |||||||||| |||| || | ||||||||||
Sbjct: 88 gtactccctccgtaaactaatataatagcgtttaga--actattttagttatctaaacac 31
Query: 70 tcttatatttctttacagagggagtac 96
||||||||| ||||||||||||||||
Sbjct: 30 tcttatattagtttacagagggagtac 4
Score = 56.0 bits (28), Expect = 9e-08
Identities = 74/87 (85%), Gaps = 3/87 (3%)
Strand = Plus / Plus
Query: 11 gtactccctccgtaa-caaatataagagcgtttagataactaaagtaatgatctaaacac 69
|||||||||| |||| | |||||||||| ||||||||||||||| || | ||||||| |
Sbjct: 4 gtactccctctgtaaactaatataagagtgtttagataactaaaata--gttctaaacgc 61
Query: 70 tcttatatttctttacagagggagtac 96
| ||||||| ||||| ||||||||||
Sbjct: 62 tattatattagtttacggagggagtac 88
>RF00906;MIR1122;EU282676.1/869-732 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 138
Score = 63.9 bits (32), Expect = 4e-10
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 28 aatataagagcgtttagataactaaagtaatgatctaaacactcttatatttctttacag 87
||||||||||||||||||| |||| |||||||||||| |||||||||| ||||| |
Sbjct: 67 aatataagagcgtttagatcactattttaatgatctaaatgctcttatattagtttacgg 126
Query: 88 agggagta 95
||||||||
Sbjct: 127 agggagta 134
Score = 63.9 bits (32), Expect = 4e-10
Identities = 60/68 (88%), Gaps = 1/68 (1%)
Strand = Plus / Minus
Query: 12 tactccctccgtaa-caaatataagagcgtttagataactaaagtaatgatctaaacact 70
|||||||||||||| | ||||||||||| ||||||| | |||| || |||||||||| ||
Sbjct: 134 tactccctccgtaaactaatataagagcatttagatcattaaaatagtgatctaaacgct 75
Query: 71 cttatatt 78
||||||||
Sbjct: 74 cttatatt 67
Score = 52.0 bits (26), Expect = 1e-06
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 39 gtttagataactaaagtaatgatctaaacactcttatatttctttacagagggagtac 96
|||||||| | |||| | |||| |||||| |||||||||| ||||||||||||||||
Sbjct: 61 gtttagatcattaaaattatgacctaaacgctcttatattagtttacagagggagtac 4
>RF00906;MIR1122;FJ711024.1/1206-1298 37717:Agropyron mongolicum
Length = 93
Score = 63.9 bits (32), Expect = 4e-10
Identities = 59/68 (86%)
Strand = Plus / Minus
Query: 28 aatataagagcgtttagataactaaagtaatgatctaaacactcttatatttctttacag 87
||||||||||||||||||| |||| || ||||| |||| |||||||||| |||||||
Sbjct: 72 aatataagagcgtttagatcactattttagtgatccaaacgctcttatattaatttacag 13
Query: 88 agggagta 95
||||||||
Sbjct: 12 agggagta 5
Score = 61.9 bits (31), Expect = 2e-09
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 28 aatataagagcgtttagataactaaagtaatgatctaaacactcttatatt 78
||||||||||||||| ||| |||||| || |||||||||| ||||||||||
Sbjct: 22 aatataagagcgtttggatcactaaaatagtgatctaaacgctcttatatt 72
>RF00906;MIR1122;FJ436986.1/53497-53587 37682:Aegilops tauschii
Length = 91
Score = 63.9 bits (32), Expect = 4e-10
Identities = 75/87 (86%), Gaps = 3/87 (3%)
Strand = Plus / Minus
Query: 11 gtactccctccgtaa-caaatataagagcgtttagataactaaagtaatgatctaaacac 69
||||||||||||||| | |||||||||||||||||| |||| || | ||||||||||
Sbjct: 88 gtactccctccgtaaactaatataagagcgtttaga--actattttagttatctaaacac 31
Query: 70 tcttatatttctttacagagggagtac 96
| ||||||| ||||||||||||||||
Sbjct: 30 ttttatattagtttacagagggagtac 4
Score = 56.0 bits (28), Expect = 9e-08
Identities = 74/87 (85%), Gaps = 3/87 (3%)
Strand = Plus / Plus
Query: 11 gtactccctccgtaa-caaatataagagcgtttagataactaaagtaatgatctaaacac 69
|||||||||| |||| | ||||||| || ||||||||||||||| || | ||||||| |
Sbjct: 4 gtactccctctgtaaactaatataaaagtgtttagataactaaaata--gttctaaacgc 61
Query: 70 tcttatatttctttacagagggagtac 96
||||||||| ||||| ||||||||||
Sbjct: 62 tcttatattagtttacggagggagtac 88
>RF00906;MIR1122;DQ537336.1/26726-26824 4565:Triticum aestivum
(bread wheat)
Length = 99
Score = 60.0 bits (30), Expect = 6e-09
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 58 tgatctaaacactcttatatttctttacagagggagta 95
|||||||||| ||||||||||||||||||||||||||
Sbjct: 42 tgatctaaacgatcttatatttctttacagagggagta 5
>RF00906;MIR1122;AY853252.1/53493-53585 4513:Hordeum vulgare
Length = 93
Score = 60.0 bits (30), Expect = 6e-09
Identities = 73/86 (84%), Gaps = 1/86 (1%)
Strand = Plus / Minus
Query: 11 gtactccctccgtaa-caaatataagagcgtttagataactaaagtaatgatctaaacac 69
||||||||||| ||| | ||||||||||| ||||||| | |||| || ||||||||| |
Sbjct: 90 gtactccctccataaactaatataagagcatttagattattaaaatagtgatctaaatgc 31
Query: 70 tcttatatttctttacagagggagta 95
| ||||||| |||||||||||||||
Sbjct: 30 ttttatattagtttacagagggagta 5
>RF00906;MIR1122;CR626934.1/48037-47942 4565:Triticum aestivum
(bread wheat)
Length = 96
Score = 58.0 bits (29), Expect = 2e-08
Identities = 61/71 (85%), Gaps = 3/71 (4%)
Strand = Plus / Minus
Query: 28 aatataagagcgtttagataactaaagtaat---gatctaaacactcttatatttcttta 84
||||||||||||||||||| |||| |||| | ||||||||| |||| |||||| || |
Sbjct: 75 aatataagagcgtttagatcactagagtagtagtgatctaaacgctctcatatttattca 16
Query: 85 cagagggagta 95
|||||||||||
Sbjct: 15 cagagggagta 5
>RF00906;MIR1122;DQ295068.1/1030-931 4550:Secale cereale (rye)
Length = 100
Score = 58.0 bits (29), Expect = 2e-08
Identities = 51/57 (89%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 11 gtactccctccgtaa-caaatataagagcgtttagataactaaagtaatgatctaaa 66
|||||||||| |||| | ||||||||||| ||||||| ||||||||| |||||||||
Sbjct: 4 gtactccctctgtaaactaatataagagcttttagatcactaaagtagtgatctaaa 60
Score = 46.1 bits (23), Expect = 9e-05
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 58 tgatctaaacactcttatatttctttacagagggagtac 96
||||||||| |||||||||| ||||||||||||||||
Sbjct: 42 tgatctaaaagctcttatattagtttacagagggagtac 4
>RF00906;MIR1122;EU282300.1/610-519 97361:Hordeum murinum
Length = 92
Score = 58.0 bits (29), Expect = 2e-08
Identities = 60/69 (86%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 28 aatataagagcgtttagataactaaagtaatgatctaaacactcttatatttctttacag 87
||||||| ||||||||||| | ||| ||| ||||||||| |||||||||| |||||||
Sbjct: 22 aatataaaagcgtttagatcattaa-gtagtgatctaaatgctcttatattagtttacag 80
Query: 88 agggagtac 96
|||||||||
Sbjct: 81 agggagtac 89
>RF00906;MIR1122;AY485644.1/177748-177656 4568:Triticum monococcum
Length = 93
Score = 54.0 bits (27), Expect = 4e-07
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 28 aatataagagcgtttagataactaaagtaatgatctaaacactcttatatttctttacag 87
|||||||||||||| |||| | |||| | |||||||||| |||||||||| ||||| |
Sbjct: 22 aatataagagcgttgagatcattaaaattgtgatctaaactctcttatattagtttacgg 81
Query: 88 agggagt 94
|||||||
Sbjct: 82 agggagt 88
Score = 50.1 bits (25), Expect = 6e-06
Identities = 68/81 (83%), Gaps = 1/81 (1%)
Strand = Plus / Minus
Query: 13 actccctccgt-aacaaatataagagcgtttagataactaaagtaatgatctaaacactc 71
||||||||||| ||| |||||||||| |||||||| || | ||||||||| ||| |||
Sbjct: 88 actccctccgtaaactaatataagagagtttagatcacaattttaatgatctcaacgctc 29
Query: 72 ttatatttctttacagaggga 92
||||||| |||||| |||||
Sbjct: 28 ttatattagtttacaaaggga 8
>RF00906;MIR1122;AF458277.1/188-282 85692:Triticum turgidum subsp.
dicoccoides
Length = 95
Score = 54.0 bits (27), Expect = 4e-07
Identities = 63/74 (85%), Gaps = 2/74 (2%)
Strand = Plus / Plus
Query: 28 aatataagagcgtttagataactaa--agtaatgatctaaacactcttatatttctttac 85
||||||||| | ||||||| ||||| |||| ||||||||| ||||||||| |||||
Sbjct: 22 aatataagaccttttagatcactaagtagtagtgatctaaaaggtcttatattagtttac 81
Query: 86 agagggagtacaat 99
||||||||||||||
Sbjct: 82 agagggagtacaat 95
>RF00906;MIR1122;AK248998.1/1925-1844 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 82
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 70 tcttatatttctttacagagggagta 95
||||||||||||||||||||||||||
Sbjct: 30 tcttatatttctttacagagggagta 5
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 70 tcttatatttctttacagagggag 93
||||||||||||||||||||||||
Sbjct: 53 tcttatatttctttacagagggag 76
>RF00906;MIR1122;EF067844.1/459123-459031 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 52.0 bits (26), Expect = 1e-06
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 60 atctaaacactcttatatttctttacagagggagtaca 97
||||||| ||||||||||| |||||||||||||||||
Sbjct: 40 atctaaatactcttatattagtttacagagggagtaca 3
Score = 48.1 bits (24), Expect = 2e-05
Identities = 61/72 (84%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 8 tatgtactccctccgt-aacaaatataagagcgtttagataactaaagtaatgatctaaa 66
||||||||||||| || ||| |||||||||| ||||||| |||||| || || ||||||
Sbjct: 1 tatgtactccctctgtaaactaatataagagtatttagattactaaaatagtgttctaaa 60
Query: 67 cactcttatatt 78
||||||||||
Sbjct: 61 tgctcttatatt 72
>RF00906;MIR1122;AK251798.1/892-984 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 93
Score = 50.1 bits (25), Expect = 6e-06
Identities = 71/85 (83%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 12 tactccctccgt-aacaaatataagagcgtttagataactaaagtaatgatctaaacact 70
|||||||||||| ||| ||||||||| | ||||||| ||| ||||| || |||||| ||
Sbjct: 5 tactccctccgtaaactaatataagaacatttagattactgaagtagtgttctaaatgct 64
Query: 71 cttatatttctttacagagggagta 95
|||||||| |||| |||||||||
Sbjct: 65 cttatattagtttatggagggagta 89
>RF00906;MIR1122;EU835198.1/64297-64202 85692:Triticum turgidum
subsp. dicoccoides
Length = 96
Score = 48.1 bits (24), Expect = 2e-05
Identities = 53/62 (85%), Gaps = 3/62 (4%)
Strand = Plus / Minus
Query: 27 aaatataagagcgtttagataactaaa---gtaatgatctaaacactcttatatttcttt 83
||||| |||||||| ||||| |||||| ||| |||||||||| ||||||||||||||
Sbjct: 76 aaatacaagagcgtctagatcactaaaatagtagtgatctaaacgttcttatatttcttt 17
Query: 84 ac 85
||
Sbjct: 16 ac 15
>RF00906;MIR1122;AK250453.1/820-743 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 78
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 64 aaacactcttatatttctttacagagggagta 95
||||||||||||||| |||||||||||||||
Sbjct: 36 aaacactcttatattagtttacagagggagta 5
