miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;DQ885765.1/4441-4533 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 48 tccgtgaagaaatataagagcatttagatca 78
||||| |||||||||||||||||||||||||
Sbjct: 82 tccgtaaagaaatataagagcatttagatca 52
>RF00906;MIR1122;EU660903.1/5594-5502 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 54 aagaaatataagagcatttagat 76
|||||||||||||||||||||||
Sbjct: 76 aagaaatataagagcatttagat 54
>RF00906;MIR1122;AF277253.1/801-887 58935:Australopyrum velutinum
Length = 87
Score = 46.1 bits (23), Expect = 2e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 92 tgatccaaacgcttttgtatttctttacaaagggagtac 130
||||| ||||||| || |||||||||||| |||||||||
Sbjct: 46 tgatctaaacgctcttatatttctttacagagggagtac 84
Score = 44.1 bits (22), Expect = 6e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 92 tgatccaaacgcttttgtatttctttacaaagggagta 129
||||| ||||||| || |||||||||||| ||||||||
Sbjct: 42 tgatctaaacgctcttatatttctttacagagggagta 5
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 54 aagaaatataagagcatttagatcat 79
||||||||||||||| ||||||||||
Sbjct: 18 aagaaatataagagcgtttagatcat 43
>RF00906;MIR1122;EU282676.1/869-732 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 138
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 58 aatataagagcatttagatcat 79
||||||||||||||||||||||
Sbjct: 117 aatataagagcatttagatcat 96
