miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AJ249141.1/1014-910 4513:Hordeum vulgare
Length = 105
Score = 131 bits (66), Expect = 2e-30
Identities = 78/82 (95%)
Strand = Plus / Plus
Query: 32 aaaataagtgtcttaagcttagtacaaatttgtactagagcttatacaaagttgagacag 91
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 20 aaaataagtgtcttaagcttagtacaactttgtactagagctaatacaaagttgagacag 79
Query: 92 ttatttttggacggagggagta 113
||||||| |||||||||||||
Sbjct: 80 ttattttgagacggagggagta 101
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 17 tactccctccgtctcaaaataagtgtct 44
|||||||||||||||||||||| |||||
Sbjct: 101 tactccctccgtctcaaaataactgtct 74
>RF00906;MIR1122;AY133251.1/901-1005 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 131 bits (66), Expect = 2e-30
Identities = 90/98 (91%)
Strand = Plus / Plus
Query: 17 tactccctccgtctcaaaataagtgtcttaagcttagtacaaatttgtactagagcttat 76
|||||||||||| ||||||||||||||| ||| |||||||| |||||||||||||| |
Sbjct: 5 tactccctccgttccaaaataagtgtcttgagcgtagtacaattttgtactagagctagt 64
Query: 77 acaaagttgagacagttatttttggacggagggagtac 114
|||||||||||||||||||||| |||||||||||||||
Sbjct: 65 acaaagttgagacagttattttgggacggagggagtac 102
>RF00906;MIR1122;AJ234485.1/114-218 4513:Hordeum vulgare
Length = 105
Score = 129 bits (65), Expect = 1e-29
Identities = 89/97 (91%)
Strand = Plus / Plus
Query: 17 tactccctccgtctcaaaataagtgtcttaagcttagtacaaatttgtactagagcttat 76
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
Sbjct: 5 tactccctccgtctcaaaataagtgtcttaatcttagtacaattttgtactagagctagt 64
Query: 77 acaaagttgagacagttatttttggacggagggagta 113
|||| ||||||||||||||||| ||| |||||||||
Sbjct: 65 acaatgttgagacagttattttgagacagagggagta 101
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 14 tactactccctccgtctcaaaataagtgtct 44
|||||||||||| |||||||||||| |||||
Sbjct: 104 tactactccctctgtctcaaaataactgtct 74
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 129 bits (65), Expect = 1e-29
Identities = 89/97 (91%)
Strand = Plus / Plus
Query: 17 tactccctccgtctcaaaataagtgtcttaagcttagtacaaatttgtactagagcttat 76
||||||||||||| |||||||||||||| ||||||||||||| ||||||||| || | ||
Sbjct: 5 tactccctccgtcccaaaataagtgtctcaagcttagtacaactttgtactaaagttaat 64
Query: 77 acaaagttgagacagttatttttggacggagggagta 113
|||||||||||||| ||||||| ||||||||||||||
Sbjct: 65 acaaagttgagacatttattttgggacggagggagta 101
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 83 ttgagacagttatttttggacggagggagta 113
|||||||| ||||||| ||||||||||||||
Sbjct: 35 ttgagacacttattttgggacggagggagta 5
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 14 tactactccctccgtctcaaaataagtgtct 44
|||||||||||||||| |||||||| |||||
Sbjct: 104 tactactccctccgtcccaaaataaatgtct 74
>RF00906;MIR1122;AY943294.1/62260-62364 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 125 bits (63), Expect = 2e-28
Identities = 90/99 (90%)
Strand = Plus / Plus
Query: 16 ctactccctccgtctcaaaataagtgtcttaagcttagtacaaatttgtactagagctta 75
||||||||||||| |||||||||||||||||||||| ||||| ||||||||| | || |
Sbjct: 4 ctactccctccgttccaaaataagtgtcttaagcttaatacaattttgtactaaatctaa 63
Query: 76 tacaaagttgagacagttatttttggacggagggagtac 114
||||||||||||||||||||||| ||||||||| |||||
Sbjct: 64 tacaaagttgagacagttattttgggacggaggaagtac 102
>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
subsp. dicoccoides
Length = 105
Score = 123 bits (62), Expect = 6e-28
Identities = 89/98 (90%)
Strand = Plus / Plus
Query: 17 tactccctccgtctcaaaataagtgtcttaagcttagtacaaatttgtactagagcttat 76
||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||| | |
Sbjct: 5 tactccctccgtcccaaaataagtgtcttgagcttagtaaaaatttgtactagagatagt 64
Query: 77 acaaagttgagacagttatttttggacggagggagtac 114
|||||||||||||| ||||||| ||| |||||||||||
Sbjct: 65 acaaagttgagacacttattttgggatggagggagtac 102
>RF00906;MIR1122;EU593539.1/914-1018 4513:Hordeum vulgare
Length = 105
Score = 121 bits (61), Expect = 2e-27
Identities = 88/97 (90%)
Strand = Plus / Plus
Query: 17 tactccctccgtctcaaaataagtgtcttaagcttagtacaaatttgtactagagcttat 76
||||||||||||| |||||||| |||||||||||||||| |||||| ||||||| || |
Sbjct: 5 tactccctccgtcccaaaataactgtcttaagcttagtataaatttatactagatctagt 64
Query: 77 acaaagttgagacagttatttttggacggagggagta 113
| |||||||||||||||||||| ||||||||||||||
Sbjct: 65 ataaagttgagacagttattttgggacggagggagta 101
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 86 agacagttatttttggacggagggagta 113
||||||||||||| ||||||||||||||
Sbjct: 32 agacagttattttgggacggagggagta 5
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 121 bits (61), Expect = 2e-27
Identities = 88/97 (90%)
Strand = Plus / Plus
Query: 17 tactccctccgtctcaaaataagtgtcttaagcttagtacaaatttgtactagagcttat 76
||||||||||||| |||||||||||||| ||||||||||||| |||||||| || | ||
Sbjct: 5 tactccctccgtcccaaaataagtgtctcaagcttagtacaaccttgtactaaagttaat 64
Query: 77 acaaagttgagacagttatttttggacggagggagta 113
|||||||||||||| ||||||| ||||||||||||||
Sbjct: 65 acaaagttgagacatttattttgggacggagggagta 101
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 83 ttgagacagttatttttggacggagggagta 113
|||||||| ||||||| ||||||||||||||
Sbjct: 35 ttgagacacttattttgggacggagggagta 5
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 14 tactactccctccgtctcaaaataagtgtct 44
|||||||||||||||| |||||||| |||||
Sbjct: 104 tactactccctccgtcccaaaataaatgtct 74
>RF00906;MIR1122;DQ995510.1/1615-1718 4513:Hordeum vulgare
Length = 104
Score = 117 bits (59), Expect = 4e-26
Identities = 90/99 (90%), Gaps = 1/99 (1%)
Strand = Plus / Plus
Query: 17 tactccctccgtctcaaaataagtgtcttaagcttagtacaaatttgtactagagcttat 76
|||||||||||||||||||||| ||||| || ||| |||||| |||||||||||||| |
Sbjct: 5 tactccctccgtctcaaaataactgtctcaa-ctttgtacaactttgtactagagctagt 63
Query: 77 acaaagttgagacagttatttttggacggagggagtact 115
|||||||||||||||||||||| ||| ||||||||||||
Sbjct: 64 acaaagttgagacagttattttgggatggagggagtact 102
Score = 60.0 bits (30), Expect = 8e-09
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 76 tacaaagttgagacagttatttttggacggagggagta 113
||||||||||||||||||||||| |||||||||||||
Sbjct: 42 tacaaagttgagacagttattttgagacggagggagta 5
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 115 bits (58), Expect = 1e-25
Identities = 88/98 (89%)
Strand = Plus / Plus
Query: 17 tactccctccgtctcaaaataagtgtcttaagcttagtacaaatttgtactagagcttat 76
|||||||||||||||||||||||||||| |||| |||||||| ||||||||| || | |
Sbjct: 5 tactccctccgtctcaaaataagtgtctcaagcctagtacaactttgtactaaagttagt 64
Query: 77 acaaagttgagacagttatttttggacggagggagtac 114
|||||||| ||||| ||||||| |||||||||||||||
Sbjct: 65 acaaagttaagacacttattttgggacggagggagtac 102
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 17 tactccctccgtctcaaaataagtgtcttaa 47
||||||||||||| |||||||||||||||||
Sbjct: 101 tactccctccgtcccaaaataagtgtcttaa 71
>RF00906;MIR1122;DQ445238.1/5626-5730 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 113 bits (57), Expect = 6e-25
Identities = 87/97 (89%)
Strand = Plus / Plus
Query: 17 tactccctccgtctcaaaataagtgtcttaagcttagtacaaatttgtactagagcttat 76
||||||||||||| |||||||| |||||||||||||||| |||||| || |||| || |
Sbjct: 5 tactccctccgtcccaaaataactgtcttaagcttagtataaatttatattagatctagt 64
Query: 77 acaaagttgagacagttatttttggacggagggagta 113
| |||||||||||||||||||| ||||||||||||||
Sbjct: 65 ataaagttgagacagttattttgggacggagggagta 101
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 86 agacagttatttttggacggagggagta 113
||||||||||||| ||||||||||||||
Sbjct: 32 agacagttattttgggacggagggagta 5
>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 113 bits (57), Expect = 6e-25
Identities = 87/97 (89%)
Strand = Plus / Plus
Query: 17 tactccctccgtctcaaaataagtgtcttaagcttagtacaaatttgtactagagcttat 76
||||||||||||| |||||||||||||| ||||||||| || ||||||||| |||| |
Sbjct: 5 tactccctccgtcccaaaataagtgtctcaagcttagtgtaattttgtactacagctagt 64
Query: 77 acaaagttgagacagttatttttggacggagggagta 113
|||||||||||||| ||||||| ||||||||||||||
Sbjct: 65 acaaagttgagacacttattttgggacggagggagta 101
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 17 tactccctccgtctcaaaataagtgtct 44
||||||||||||| ||||||||||||||
Sbjct: 101 tactccctccgtcccaaaataagtgtct 74
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 83 ttgagacagttatttttggacggagggagta 113
|||||||| ||||||| ||||||||||||||
Sbjct: 35 ttgagacacttattttgggacggagggagta 5
>RF00906;MIR1122;AK252392.1/1279-1175 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 105 bits (53), Expect = 1e-22
Identities = 83/93 (89%)
Strand = Plus / Plus
Query: 21 ccctccgtctcaaaataagtgtcttaagcttagtacaaatttgtactagagcttatacaa 80
||||||||| |||||||||||||||||||||||||||| ||| ||| ||||| |||||
Sbjct: 9 ccctccgtcccaaaataagtgtcttaagcttagtacaattttatacatgagctagtacaa 68
Query: 81 agttgagacagttatttttggacggagggagta 113
|||| |||||| |||||| ||||||||||||||
Sbjct: 69 agttaagacagatattttgggacggagggagta 101
>RF00906;MIR1122;X83518.1/7301-7197 4513:Hordeum vulgare
Length = 105
Score = 99.6 bits (50), Expect = 9e-21
Identities = 74/82 (90%)
Strand = Plus / Plus
Query: 17 tactccctccgtctcaaaataagtgtcttaagcttagtacaaatttgtactagagcttat 76
|||||||||| ||||||||||| ||||| ||||||||||||| |||||| ||||||| |
Sbjct: 5 tactccctccatctcaaaataactgtctcaagcttagtacaactttgtagtagagctagt 64
Query: 77 acaaagttgagacagttatttt 98
|||||||||||||| |||||||
Sbjct: 65 acaaagttgagacacttatttt 86
>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum (bread
wheat)
Length = 104
Score = 97.6 bits (49), Expect = 3e-20
Identities = 86/97 (88%), Gaps = 1/97 (1%)
Strand = Plus / Plus
Query: 17 tactccctccgtctcaaaataagtgtcttaagcttagtacaaatttgtactagagcttat 76
||||||||||||| |||||||||||||| || |||||||||| ||| |||||||| | |
Sbjct: 5 tactccctccgtcccaaaataagtgtctcaaccttagtacaattttatactagagttagt 64
Query: 77 acaaagttgagacagttatttttggacggagggagta 113
|||||| ||||||| ||||||| ||||||||||||||
Sbjct: 65 acaaag-tgagacacttattttgggacggagggagta 100
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 82 gttgagacagttatttttggacggagggagta 113
||||||||| ||||||| ||||||||||||||
Sbjct: 36 gttgagacacttattttgggacggagggagta 5
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 17 tactccctccgtctcaaaataagtgtct 44
||||||||||||| ||||||||||||||
Sbjct: 100 tactccctccgtcccaaaataagtgtct 73
>RF00906;MIR1122;DQ175992.1/50-154 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 97.6 bits (49), Expect = 3e-20
Identities = 85/97 (87%)
Strand = Plus / Plus
Query: 17 tactccctccgtctcaaaataagtgtcttaagcttagtacaaatttgtactagagcttat 76
||||| |||||| | |||||||||||||||||||||||| || ||| ||||||||||
Sbjct: 5 tactctctccgttttaaaataagtgtcttaagcttagtataattttatactagagctaga 64
Query: 77 acaaagttgagacagttatttttggacggagggagta 113
|||||||| ||||| ||||||| ||||||||||||||
Sbjct: 65 acaaagttaagacaattattttgggacggagggagta 101
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 16 ctactccctccgtctcaaaataagtgtcttaa 47
|||||||||||||| |||||||| ||||||||
Sbjct: 102 ctactccctccgtcccaaaataattgtcttaa 71
>RF00906;MIR1122;DQ445236.1/13423-13319 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 97.6 bits (49), Expect = 3e-20
Identities = 85/97 (87%)
Strand = Plus / Minus
Query: 17 tactccctccgtctcaaaataagtgtcttaagcttagtacaaatttgtactagagcttat 76
|||||||||||| |||||||| | ||| ||||||||||||| |||||||||||||| |
Sbjct: 101 tactccctccgttccaaaataactatctcaagcttagtacaactttgtactagagctagt 42
Query: 77 acaaagttgagacagttatttttggacggagggagta 113
||||| |||||||| ||||||| | ||||||||||||
Sbjct: 41 acaaatttgagacacttattttggaacggagggagta 5
>RF00906;MIR1122;AJ400714.1/3663-3767 4565:Triticum aestivum (bread
wheat)
Length = 105
Score = 93.7 bits (47), Expect = 5e-19
Identities = 86/99 (86%)
Strand = Plus / Minus
Query: 17 tactccctccgtctcaaaataagtgtcttaagcttagtacaaatttgtactagagcttat 76
||||||||||||| |||||||||||||| || |||||||||| |||||||||||| | |
Sbjct: 101 tactccctccgtcccaaaataagtgtctcaaccttagtacaactttgtactagagttagt 42
Query: 77 acaaagttgagacagttatttttggacggagggagtact 115
||| |||||||| ||||||| ||||||| ||||||||
Sbjct: 41 gtaaaattgagacacttattttgggacggaaggagtact 3
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 82 gttgagacagttatttttggacggagggagta 113
||||||||| ||||||| ||||||||||||||
Sbjct: 70 gttgagacacttattttgggacggagggagta 101
>RF00906;MIR1122;AK249748.1/2677-2573 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 93.7 bits (47), Expect = 5e-19
Identities = 86/99 (86%)
Strand = Plus / Minus
Query: 17 tactccctccgtctcaaaataagtgtcttaagcttagtacaaatttgtactagagcttat 76
||||||||||||| |||||||| |||||||| ||||||| |||||| || || |||| |
Sbjct: 101 tactccctccgtcgcaaaataaatgtcttaaacttagtataaatttatagtaaagctagt 42
Query: 77 acaaagttgagacagttatttttggacggagggagtact 115
|||||||| ||||||||||||| | || |||||||||||
Sbjct: 41 acaaagttaagacagttattttggaacagagggagtact 3
>RF00906;MIR1122;AF474373.1/50497-50394 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 104
Score = 89.7 bits (45), Expect = 8e-18
Identities = 85/97 (87%), Gaps = 1/97 (1%)
Strand = Plus / Plus
Query: 17 tactccctccgtctcaaaataagtgtcttaagcttagtacaaatttgtactagagcttat 76
||||| ||||||| |||||||| ||||| |||| |||||||| ||||||||||| || |
Sbjct: 5 tactcactccgtcccaaaataactgtctcaagcctagtacaactttgtactagaactagt 64
Query: 77 acaaagttgagacagttatttttggacggagggagta 113
|||||||||||||| ||||||| ||| ||||||||||
Sbjct: 65 acaaagttgagacacttattttggga-ggagggagta 100
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 83 ttgagacagttatttttggacggagggagta 113
|||||||||||||||| |||||||| |||||
Sbjct: 35 ttgagacagttattttgggacggagtgagta 5
>RF00906;MIR1122;AK249560.1/988-1092 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 89.7 bits (45), Expect = 8e-18
Identities = 84/97 (86%)
Strand = Plus / Minus
Query: 17 tactccctccgtctcaaaataagtgtcttaagcttagtacaaatttgtactagagcttat 76
||||||||||||| |||||||| ||||| || |||| ||||| ||||||||| |||| |
Sbjct: 101 tactccctccgtcccaaaataactgtctcaaacttaatacaagtttgtactatagctagt 42
Query: 77 acaaagttgagacagttatttttggacggagggagta 113
| |||||||||||| ||||||| ||||||| ||||||
Sbjct: 41 ataaagttgagacacttattttgggacggatggagta 5
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 83 ttgagacagttatttttggacggagggagtac 114
|||||||||||||||| |||||||||||||||
Sbjct: 71 ttgagacagttattttgggacggagggagtac 102
>RF00906;MIR1122;AF521177.1/206122-206018 4513:Hordeum vulgare
Length = 105
Score = 89.7 bits (45), Expect = 8e-18
Identities = 84/97 (86%)
Strand = Plus / Plus
Query: 17 tactccctccgtctcaaaataagtgtcttaagcttagtacaaatttgtactagagcttat 76
|||||||||| | ||||||||| ||| | | ||||||||||| |||||||||||||| |
Sbjct: 5 tactccctccatttcaaaataattgtttcatgcttagtacaactttgtactagagctagt 64
Query: 77 acaaagttgagacagttatttttggacggagggagta 113
|||||||||||||| ||||||| ||||||||||||
Sbjct: 65 acaaagttgagacatttattttgaaacggagggagta 101
>RF00906;MIR1122;DQ901436.1/1229-1333 4565:Triticum aestivum (bread
wheat)
Length = 105
Score = 85.7 bits (43), Expect = 1e-16
Identities = 82/95 (86%)
Strand = Plus / Minus
Query: 17 tactccctccgtctcaaaataagtgtcttaagcttagtacaaatttgtactagagcttat 76
||||| |||| ||||||||||||||||| || |||||||| |||||| || |||| |
Sbjct: 101 tactcactccatctcaaaataagtgtctcaactctagtacaactttgtattaaagctagt 42
Query: 77 acaaagttgagacagttatttttggacggagggag 111
|||||||||||||| ||||||| ||||||||||||
Sbjct: 41 acaaagttgagacacttattttgggacggagggag 7
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 19 ctccctccgtctcaaaataagtgtct 44
||||||||||| ||||||||||||||
Sbjct: 7 ctccctccgtcccaaaataagtgtct 32
>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
Length = 112
Score = 81.8 bits (41), Expect = 2e-15
Identities = 90/107 (84%), Gaps = 7/107 (6%)
Strand = Plus / Plus
Query: 14 tactactccctccgtctcaaaataagtgtctta-------agcttagtacaaatttgtac 66
|||||||||||||||| ||||||||||||||| |||||||||||| |||||||
Sbjct: 2 tactactccctccgtcccaaaataagtgtcttgtgtcttgagcttagtacaactttgtac 61
Query: 67 tagagcttatacaaagttgagacagttatttttggacggagggagta 113
|| || | ||||||||||||||| ||||||| ||| ||||||||||
Sbjct: 62 taaagttagtacaaagttgagacacttattttgggatggagggagta 108
>RF00906;MIR1122;AF488415.1/78603-78755 4568:Triticum monococcum
Length = 153
Score = 73.8 bits (37), Expect = 5e-13
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 49 cttagtacaaatttgtactagagcttatacaaagttgagacagttatttttggacggagg 108
|||||||||| ||||||||| || | |||||| |||||||||||||||| |||||||||
Sbjct: 85 cttagtacaactttgtactaaagttagtacaaacttgagacagttattttgggacggagg 144
Query: 109 gagta 113
|||||
Sbjct: 145 gagta 149
Score = 54.0 bits (27), Expect = 5e-07
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 19 ctccctccgtctcaaaataagtgtcttaagcttagtacaaatttgtactagagcttatac 78
|||||| |||| |||||||||||||| || |||||||||| |||| |||| | | |||
Sbjct: 7 ctcccttcgtcccaaaataagtgtctcaaccttagtacaactttgcactaaatttagtac 66
Query: 79 aaagttgagac 89
|||||||||||
Sbjct: 67 aaagttgagac 77
>RF00906;MIR1122;EU282771.1/632-528 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 73.8 bits (37), Expect = 5e-13
Identities = 82/97 (84%)
Strand = Plus / Plus
Query: 17 tactccctccgtctcaaaataagtgtcttaagcttagtacaaatttgtactagagcttat 76
||||||||||||| |||||||| | ||| || |||||||||| ||| |||||||||| |
Sbjct: 5 tactccctccgtcccaaaataactttctcaaacttagtacaactttatactagagctagt 64
Query: 77 acaaagttgagacagttatttttggacggagggagta 113
|||||||||| | ||||||| |||||||||||||
Sbjct: 65 gtaaagttgagatacttattttgagacggagggagta 101
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 14 tactactccctccgtctcaaaataagt 40
|||||||||||||||||||||||||||
Sbjct: 104 tactactccctccgtctcaaaataagt 78
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 83 ttgagacagttatttttggacggagggagtact 115
|||||| ||||||||| ||||||||||||||||
Sbjct: 35 ttgagaaagttattttgggacggagggagtact 3
>RF00906;MIR1122;AJ234583.1/157-260 4513:Hordeum vulgare
Length = 104
Score = 65.9 bits (33), Expect = 1e-10
Identities = 82/97 (84%), Gaps = 1/97 (1%)
Strand = Plus / Minus
Query: 17 tactccctccgtctcaaaataagtgtcttaagcttagtacaaatttgtactagagcttat 76
|||||||||||||||||||||| ||||| |||||||||| || |||| |||| |||| |
Sbjct: 100 tactccctccgtctcaaaataattgtctcaagcttagtataactttgcacta-agctagt 42
Query: 77 acaaagttgagacagttatttttggacggagggagta 113
| ||| || ||| | ||||||| |||||||||||||
Sbjct: 41 ataaaattaagaaacttattttgagacggagggagta 5
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 17 tactccctccgtctcaaaataagtgtcttaa 47
|||||||||||||||||||||||| ||||||
Sbjct: 5 tactccctccgtctcaaaataagtttcttaa 35
>RF00906;MIR1122;EU282768.1/632-528 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 65.9 bits (33), Expect = 1e-10
Identities = 81/97 (83%)
Strand = Plus / Plus
Query: 17 tactccctccgtctcaaaataagtgtcttaagcttagtacaaatttgtactagagcttat 76
||||||||||||| |||||||| | ||| || |||||||||| ||| |||||||||| |
Sbjct: 5 tactccctccgtcccaaaataactttctcaaacttagtacaactttatactagagctagt 64
Query: 77 acaaagttgagacagttatttttggacggagggagta 113
|||| ||||| | ||||||| |||||||||||||
Sbjct: 65 gtaaagctgagatacttattttgagacggagggagta 101
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 14 tactactccctccgtctcaaaataagt 40
|||||||||||||||||||||||||||
Sbjct: 104 tactactccctccgtctcaaaataagt 78
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 83 ttgagacagttatttttggacggagggagtact 115
|||||| ||||||||| ||||||||||||||||
Sbjct: 35 ttgagaaagttattttgggacggagggagtact 3
>RF00906;MIR1122;AY663392.1/117099-117203 4565:Triticum aestivum
(bread wheat)
Length = 105
Score = 60.0 bits (30), Expect = 8e-09
Identities = 69/82 (84%)
Strand = Plus / Plus
Query: 32 aaaataagtgtcttaagcttagtacaaatttgtactagagcttatacaaagttgagacag 91
||||||||||||| || ||||||| || ||| ||||| |||| ||||||| || | |||
Sbjct: 20 aaaataagtgtctcaatcttagtataactttatactaaagctaatacaaaattaacacac 79
Query: 92 ttatttttggacggagggagta 113
||||||| ||| ||||||||||
Sbjct: 80 ttattttgggatggagggagta 101
>RF00906;MIR1122;EU282770.1/593-711 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 119
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 14 tactactccctccgtctcaaaataagtgtct 44
|||||||||||||||||||||||| ||||||
Sbjct: 2 tactactccctccgtctcaaaataggtgtct 32
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 87 gacagttatttttggacggagggagtact 115
|||||||||||| ||||||||||||||||
Sbjct: 89 gacagttattttgggacggagggagtact 117
Score = 46.1 bits (23), Expect = 1e-04
Identities = 68/83 (81%)
Strand = Plus / Minus
Query: 31 caaaataagtgtcttaagcttagtacaaatttgtactagagcttatacaaagttgagaca 90
|||||||| | ||| || |||||||||| ||| |||||||||| ||||||||||||
Sbjct: 87 caaaataactttctcaaacttagtacaactttatactagagctagggtaaagttgagaca 28
Query: 91 gttatttttggacggagggagta 113
|||||| |||||||||||||
Sbjct: 27 cctattttgagacggagggagta 5
>RF00906;MIR1122;AB183299.1/312-404 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 52.0 bits (26), Expect = 2e-06
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 19 ctccctccgtctcaaaataagtgtcttaagcttagtacaaatttgtacta 68
||||||||||| |||||||||||||| || |||||| || |||||||||
Sbjct: 7 ctccctccgtcccaaaataagtgtctcaactttagtataactttgtacta 56
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 79 aaagttgagacagttatttttggacggagggag 111
|||||||||||| ||||||| ||||||||||||
Sbjct: 39 aaagttgagacacttattttgggacggagggag 7
Score = 48.1 bits (24), Expect = 3e-05
Identities = 46/52 (88%), Gaps = 1/52 (1%)
Strand = Plus / Minus
Query: 17 tactccctccgtctcaaaataagtgtcttaagcttagtacaaatttgtacta 68
|||| |||||||| |||||||||||||| || ||||||||||| || |||||
Sbjct: 89 tacttcctccgtcccaaaataagtgtctcaa-cttagtacaaagttatacta 39
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 80 aagttgagacagttatttttggacggagggagta 113
||||||||||| ||||||| ||||||||| ||||
Sbjct: 56 aagttgagacacttattttgggacggaggaagta 89
>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
Length = 104
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 76 tacaaagttgagacagttatttttggacggagggagta 113
|||||||||||| || ||||||| ||||||||||||||
Sbjct: 63 tacaaagttgagtcacttattttgggacggagggagta 100
>RF00906;MIR1122;AK250735.1/291-376 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 86
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 15 actactccctccgtctcaaaataagtgtct 44
||||||||||||||| ||||||||||||||
Sbjct: 3 actactccctccgtcccaaaataagtgtct 32
Score = 46.1 bits (23), Expect = 1e-04
Identities = 36/39 (92%), Gaps = 1/39 (2%)
Strand = Plus / Minus
Query: 76 tacaaagttg-agacagttatttttggacggagggagta 113
|||||||||| ||||| ||||||| ||||||||||||||
Sbjct: 43 tacaaagttggagacacttattttgggacggagggagta 5
>RF00906;MIR1122;EU282251.1/1314-1209 52152:Elymus repens
Length = 106
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 14 tactactccctccgtctcaaaataagtgtc 43
|||||||||||||||| |||||||||||||
Sbjct: 2 tactactccctccgtcccaaaataagtgtc 31
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 17 tactccctccgtctcaaaataagtgtc 43
||||||||||||| |||||||||||||
Sbjct: 102 tactccctccgtcccaaaataagtgtc 76
>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
Length = 132
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 76 tacaaagttgagacagttatttttggacggagggagta 113
|||||||||||| || ||||||| ||||||||||||||
Sbjct: 42 tacaaagttgagtcacttattttgggacggagggagta 5
>RF00906;MIR1122;AC192352.2/55884-55804 3880:Medicago truncatula
(barrel medic)
Length = 81
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 14 tactactccctccgtctcaaaata 37
||||||||||||||||||||||||
Sbjct: 80 tactactccctccgtctcaaaata 57
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 ctactccctccgtctcaaaata 37
||||||||||||||||||||||
Sbjct: 4 ctactccctccgtctcaaaata 25
>RF00906;MIR1122;AF525764.1/1593-1489 200361:Aegilops tauschii
subsp. strangulata
Length = 105
Score = 48.1 bits (24), Expect = 3e-05
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 16 ctactccctccgtctcaaaataagtgtcttaagcttagtacaaatttgtact 67
||||||||||| || ||||||||||||||| ||||||||| ||||||||
Sbjct: 102 ctactccctccatcccaaaataagtgtctttgctttagtacaactttgtact 51
>RF00906;MIR1122;FJ581044.1/175385-175266 4538:Oryza glaberrima
(African rice)
Length = 120
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 17 tactccctccgtctcaaaataagt 40
||||||||||||||||||||||||
Sbjct: 116 tactccctccgtctcaaaataagt 93
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 90 agttatttttggacggagggagtact 115
||||||||| ||||||||||||||||
Sbjct: 28 agttattttgggacggagggagtact 3
>RF01058;MIR806;AL731615.4/103346-103100 39947:Oryza sativa
Japonica Group
Length = 247
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 16 ctactccctccgtctcaaaataagtgt 42
|||||||||||||| ||||||||||||
Sbjct: 1 ctactccctccgtcccaaaataagtgt 27
>RF01058;MIR806;AAAA02021561.1/35714-35484 39946:Oryza sativa
Indica Group
Length = 231
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tactccctccgtctcaaaataag 39
|||||||||||||||||||||||
Sbjct: 2 tactccctccgtctcaaaataag 24
>RF00906;MIR1122;DQ537336.1/120340-120474 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 87 gacagttatttttggacggagggagta 113
|||| ||||||||||||||||||||||
Sbjct: 105 gacaattatttttggacggagggagta 131
>RF00906;MIR1122;FJ491378.1/3751-3855 4550:Secale cereale (rye)
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 13 atactactccctccgtctcaaaataagtgtc 43
||||||||||| ||||| |||||||||||||
Sbjct: 105 atactactcccgccgtcccaaaataagtgtc 75
>RF00906;MIR1122;AK252095.1/1820-1925 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 106
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 17 tactccctccgtctcaaaataagtgtc 43
|||||||||||| ||||||||||||||
Sbjct: 5 tactccctccgtatcaaaataagtgtc 31
>RF00906;MIR1122;AY268139.1/69673-69778 4513:Hordeum vulgare
Length = 106
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 17 tactccctccgtctcaaaataagtgtcttaa 47
|||| ||||||||||||||||| ||||||||
Sbjct: 102 tacttcctccgtctcaaaataactgtcttaa 72
>RF00906;MIR1122;AK249769.1/2180-2285 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 106
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 17 tactccctccgtctcaaaataagtgtc 43
|||||||||||||| ||||||||||||
Sbjct: 5 tactccctccgtcttaaaataagtgtc 31
>RF00906;MIR1122;AACV01002208.1/17153-17286 39947:Oryza sativa
Japonica Group
Length = 134
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 15 actactccctccgtctcaaaata 37
|||||||||||||||||||||||
Sbjct: 132 actactccctccgtctcaaaata 110
>RF00906;MIR1122;CR855136.1/20944-20809 4530:Oryza sativa (rice)
Length = 136
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 15 actactccctccgtctcaaaata 37
|||||||||||||||||||||||
Sbjct: 134 actactccctccgtctcaaaata 112
>RF00906;MIR1122;AL732333.2/10670-10758 4530:Oryza sativa (rice)
Length = 89
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 93 tatttttggacggagggagtact 115
|||||||||||||||||||||||
Sbjct: 65 tatttttggacggagggagtact 87
>RF00906;MIR1122;AACV01001520.1/25871-25960 39947:Oryza sativa
Japonica Group
Length = 90
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 89 cagttatttttggacggagggagtact 115
|||||||||| ||||||||||||||||
Sbjct: 29 cagttattttgggacggagggagtact 3
>RF01058;MIR806;AACV01000175.1/175-418 39947:Oryza sativa Japonica
Group
Length = 244
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 ctactccctccgtctcaaaataagtg 41
|||||||||||||| |||||||||||
Sbjct: 1 ctactccctccgtcccaaaataagtg 26
>RF01058;MIR806;AAAA02015465.1/824-1069 39946:Oryza sativa Indica
Group
Length = 246
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 16 ctactccctccgtctcaaaataagtg 41
|||||||||||||| |||||||||||
Sbjct: 246 ctactccctccgtcccaaaataagtg 221
>RF01058;MIR806;AAAA02001819.1/3379-3140 39946:Oryza sativa Indica
Group
Length = 240
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 ctactccctccgtctcaaaataagtg 41
||||| ||||||||||||||||||||
Sbjct: 1 ctactacctccgtctcaaaataagtg 26
>RF01058;MIR806;AP004279.1/119207-118967 39947:Oryza sativa Japonica
Group
Length = 241
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 16 ctactccctccgtctcaaaataagtg 41
|||||||||||||| |||||||||||
Sbjct: 241 ctactccctccgtcccaaaataagtg 216
>RF01058;MIR806;AAAA02012959.1/2038-1794 39946:Oryza sativa Indica
Group
Length = 245
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 ctactccctccgtctcaaaataagtg 41
|||||||||||||| |||||||||||
Sbjct: 1 ctactccctccgtcccaaaataagtg 26
>RF01058;MIR806;AAAA02009876.1/3121-2881 39946:Oryza sativa Indica
Group
Length = 241
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 ctactccctccgtctcaaaataagtg 41
||||| ||||||||||||||||||||
Sbjct: 1 ctactacctccgtctcaaaataagtg 26
>RF01058;MIR806;AAAA02007955.1/54103-53859 39946:Oryza sativa
Indica Group
Length = 245
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 ctactccctccgtctcaaaataagtg 41
|||||||||||||| |||||||||||
Sbjct: 1 ctactccctccgtcccaaaataagtg 26
>RF00906;MIR1122;U29095.1/333-439 4565:Triticum aestivum (bread
wheat)
Length = 107
Score = 44.1 bits (22), Expect = 4e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 76 tacaaagttgagacagttatttttggacggagggagta 113
|||||||||||| || |||||| ||||||||||||||
Sbjct: 66 tacaaagttgagtcacttatttcgggacggagggagta 103
>RF00906;MIR1122;AB239678.1/2131-2247 52163:Triticum monococcum
subsp. aegilopoides
Length = 117
Score = 44.1 bits (22), Expect = 4e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 76 tacaaagttgagacagttatttttggacggagggagta 113
|||||||||||| || ||| ||| ||||||||||||||
Sbjct: 42 tacaaagttgagtcacttaatttgggacggagggagta 5
>RF00906;MIR1122;FJ477093.1/40908-41001 4513:Hordeum vulgare
Length = 94
Score = 44.1 bits (22), Expect = 4e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 76 tacaaagttgagacagttatttttggacggagggagta 113
|||||||||||| || ||||||| |||| |||||||||
Sbjct: 42 tacaaagttgagtcacttattttgggacagagggagta 5
>RF00906;MIR1122;AAAA02022195.1/27114-27226 39946:Oryza sativa
Indica Group
Length = 113
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tactccctccgtctcaaaataa 38
||||||||||||||||||||||
Sbjct: 5 tactccctccgtctcaaaataa 26
>RF00906;MIR1122;AAAA02001100.1/45089-44935 39946:Oryza sativa
Indica Group
Length = 155
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 90 agttatttttggacggagggagtact 115
|||| |||||||||||||||||||||
Sbjct: 128 agttttttttggacggagggagtact 153
>RF00906;MIR1122;AACV01008275.1/11041-11180 39947:Oryza sativa
Japonica Group
Length = 140
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 16 ctactccctccgtctcaaaata 37
||||||||||||||||||||||
Sbjct: 137 ctactccctccgtctcaaaata 116
>RF00906;MIR1122;AAAA02004858.1/41238-41369 39946:Oryza sativa
Indica Group
Length = 132
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 tactactccctccgtctcaaaa 35
||||||||||||||||||||||
Sbjct: 2 tactactccctccgtctcaaaa 23
>RF00906;MIR1122;AP008213.1/24848104-24848218 39947:Oryza sativa
Japonica Group
Length = 115
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 93 tatttttggacggagggagtac 114
||||||||||||||||||||||
Sbjct: 91 tatttttggacggagggagtac 112
>RF00906;MIR1122;AAAA02026943.1/18413-18317 39946:Oryza sativa
Indica Group
Length = 97
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 17 tactccctccgtctcaaaataa 38
||||||||||||||||||||||
Sbjct: 93 tactccctccgtctcaaaataa 72
