miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;X80068.1/1038-939 4513:Hordeum vulgare
Length = 100
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 36 gatcttatattatgggacggag 57
||||||||||||||||||||||
Sbjct: 32 gatcttatattatgggacggag 11
>RF00906;MIR1122;EU626553.1/26077-25985 4572:Triticum urartu
Length = 93
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 33 aacgatcttatattatgggacggag 57
|||| ||||||||||||||||||||
Sbjct: 59 aacgttcttatattatgggacggag 83
>RF00906;MIR1122;CT009735.1/55205-55297 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 33 aacgatcttatattatgggacggag 57
|||| ||||||||||||||||||||
Sbjct: 35 aacgctcttatattatgggacggag 11
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 33 aacgatcttatattatgggacggag 57
|||| ||||||||||||||||||||
Sbjct: 59 aacgctcttatattatgggacggag 83
>RF00906;MIR1122;AJ234502.1/104-174 4513:Hordeum vulgare
Length = 71
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 33 aacgatcttatattatgggacggag 57
|||| ||||||||||||||||||||
Sbjct: 37 aacgctcttatattatgggacggag 61
>RF00906;MIR1122;CT009625.1/19364-19456 37682:Aegilops tauschii
Length = 93
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 33 aacgatcttatattatgggacggag 57
|||| ||||||||||||||||||||
Sbjct: 59 aacgttcttatattatgggacggag 83
>RF00906;MIR1122;FJ374604.1/80-162 4573:Aegilops speltoides
Length = 83
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 33 aacgatcttatattatgggacggag 57
|||| ||||||||||||||||||||
Sbjct: 35 aacgctcttatattatgggacggag 11
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 33 aacgatcttatattatgggacggag 57
|||| ||||||||||||||||||||
Sbjct: 49 aacgctcttatattatgggacggag 73
>RF00906;MIR1122;AF343492.1/1298-1206 58531:Aegilops speltoides
subsp. speltoides
Length = 93
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 33 aacgatcttatattatgggacggag 57
|||| ||||||||||||||||||||
Sbjct: 35 aacgttcttatattatgggacggag 11
>RF00906;MIR1122;AP005383.3/77876-77739 39947:Oryza sativa
Japonica Group
Length = 138
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 4 ctactactccctccgtctcat 24
|||||||||||||||||||||
Sbjct: 1 ctactactccctccgtctcat 21
>RF00906;MIR1122;AACV01015661.1/3431-3301 39947:Oryza sativa
Japonica Group
Length = 131
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 37 atcttatattatgggacggag 57
|||||||||||||||||||||
Sbjct: 31 atcttatattatgggacggag 11
