miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;DQ175992.1/50-154 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 85.7 bits (43), Expect = 2e-16
Identities = 70/79 (88%)
Strand = Plus / Plus
Query: 37 tactccctccgttctaaaataagtgtctcaagcttgatacaattttatactagagatagc 96
||||| ||||||| |||||||||||||| |||||| || ||||||||||||||| |||
Sbjct: 5 tactctctccgttttaaaataagtgtcttaagcttagtataattttatactagagctaga 64
Query: 97 acaaagttgagacaattat 115
|||||||| ||||||||||
Sbjct: 65 acaaagttaagacaattat 83
>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum (bread
wheat)
Length = 104
Score = 77.8 bits (39), Expect = 4e-14
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 37 tactccctccgttctaaaataagtgtctcaagcttgatacaattttatactagagatagc 96
|||||||||||| | |||||||||||||||| ||| |||||||||||||||||| |||
Sbjct: 5 tactccctccgtcccaaaataagtgtctcaaccttagtacaattttatactagagttagt 64
Query: 97 acaaagt 103
|||||||
Sbjct: 65 acaaagt 71
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 37 tactccctccgttctaaaataagtgtctca 66
|||||||||||| | |||||||||||||||
Sbjct: 100 tactccctccgtcccaaaataagtgtctca 71
>RF00906;MIR1122;AY943294.1/62260-62364 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 77.8 bits (39), Expect = 4e-14
Identities = 69/79 (87%)
Strand = Plus / Plus
Query: 37 tactccctccgttctaaaataagtgtctcaagcttgatacaattttatactagagatagc 96
|||||||||||||| ||||||||||||| |||||| |||||||||| ||||| | ||
Sbjct: 5 tactccctccgttccaaaataagtgtcttaagcttaatacaattttgtactaaatctaat 64
Query: 97 acaaagttgagacaattat 115
|||||||||||||| ||||
Sbjct: 65 acaaagttgagacagttat 83
>RF00906;MIR1122;AY133251.1/901-1005 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 77.8 bits (39), Expect = 4e-14
Identities = 69/79 (87%)
Strand = Plus / Plus
Query: 37 tactccctccgttctaaaataagtgtctcaagcttgatacaattttatactagagatagc 96
|||||||||||||| ||||||||||||| ||| | ||||||||| |||||||| |||
Sbjct: 5 tactccctccgttccaaaataagtgtcttgagcgtagtacaattttgtactagagctagt 64
Query: 97 acaaagttgagacaattat 115
|||||||||||||| ||||
Sbjct: 65 acaaagttgagacagttat 83
>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 71.9 bits (36), Expect = 3e-12
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 36 ttactccctccgttctaaaataagtgtctcaagcttgatacaattttatactagagatag 95
||||||||||||| | |||||||||||||||||||| | |||||| ||||| || |||
Sbjct: 4 ttactccctccgtcccaaaataagtgtctcaagcttagtgtaattttgtactacagctag 63
Query: 96 cacaaagttgagacaattat 115
|||||||||||||| ||||
Sbjct: 64 tacaaagttgagacacttat 83
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 37 tactccctccgttctaaaataagtgtctcaa 67
|||||||||||| | ||||||||||||||||
Sbjct: 101 tactccctccgtcccaaaataagtgtctcaa 71
>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
subsp. dicoccoides
Length = 105
Score = 69.9 bits (35), Expect = 1e-11
Identities = 68/79 (86%)
Strand = Plus / Plus
Query: 37 tactccctccgttctaaaataagtgtctcaagcttgatacaattttatactagagatagc 96
|||||||||||| | ||||||||||||| ||||| || || ||| ||||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtcttgagcttagtaaaaatttgtactagagatagt 64
Query: 97 acaaagttgagacaattat 115
|||||||||||||| ||||
Sbjct: 65 acaaagttgagacacttat 83
>RF00906;MIR1122;DQ445236.1/13423-13319 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 69.9 bits (35), Expect = 1e-11
Identities = 68/79 (86%)
Strand = Plus / Minus
Query: 37 tactccctccgttctaaaataagtgtctcaagcttgatacaattttatactagagatagc 96
|||||||||||||| ||||||| | |||||||||| ||||| ||| |||||||| |||
Sbjct: 101 tactccctccgttccaaaataactatctcaagcttagtacaactttgtactagagctagt 42
Query: 97 acaaagttgagacaattat 115
||||| |||||||| ||||
Sbjct: 41 acaaatttgagacacttat 23
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 37 tactccctccgttctaaaataagtgtctcaa 67
|||||||||||||| ||||||||||||||||
Sbjct: 5 tactccctccgttccaaaataagtgtctcaa 35
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 69.9 bits (35), Expect = 1e-11
Identities = 68/79 (86%)
Strand = Plus / Plus
Query: 37 tactccctccgttctaaaataagtgtctcaagcttgatacaattttatactagagatagc 96
|||||||||||| | |||||||||||||||||||| ||||| ||| ||||| || ||
Sbjct: 5 tactccctccgtcccaaaataagtgtctcaagcttagtacaactttgtactaaagttaat 64
Query: 97 acaaagttgagacaattat 115
|||||||||||||| ||||
Sbjct: 65 acaaagttgagacatttat 83
>RF00906;MIR1122;AJ249141.1/1014-910 4513:Hordeum vulgare
Length = 105
Score = 63.9 bits (32), Expect = 7e-10
Identities = 65/76 (85%)
Strand = Plus / Plus
Query: 40 tccctccgttctaaaataagtgtctcaagcttgatacaattttatactagagatagcaca 99
|||||| || ||||||||||||||| |||||| ||||| ||| |||||||| || |||
Sbjct: 8 tccctcggtcctaaaataagtgtcttaagcttagtacaactttgtactagagctaataca 67
Query: 100 aagttgagacaattat 115
||||||||||| ||||
Sbjct: 68 aagttgagacagttat 83
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 115 tattttaggaccgagggaatatata 139
|||||||||||||||||||||||||
Sbjct: 25 tattttaggaccgagggaatatata 1
>RF00906;MIR1122;AK249560.1/988-1092 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 61.9 bits (31), Expect = 3e-09
Identities = 67/79 (84%)
Strand = Plus / Minus
Query: 37 tactccctccgttctaaaataagtgtctcaagcttgatacaattttatactagagatagc 96
|||||||||||| | ||||||| |||||||| ||| |||||| ||| ||||| || |||
Sbjct: 101 tactccctccgtcccaaaataactgtctcaaacttaatacaagtttgtactatagctagt 42
Query: 97 acaaagttgagacaattat 115
| |||||||||||| ||||
Sbjct: 41 ataaagttgagacacttat 23
>RF00906;MIR1122;AJ234485.1/114-218 4513:Hordeum vulgare
Length = 105
Score = 61.9 bits (31), Expect = 3e-09
Identities = 67/79 (84%)
Strand = Plus / Plus
Query: 37 tactccctccgttctaaaataagtgtctcaagcttgatacaattttatactagagatagc 96
|||||||||||| ||||||||||||| || ||| ||||||||| |||||||| |||
Sbjct: 5 tactccctccgtctcaaaataagtgtcttaatcttagtacaattttgtactagagctagt 64
Query: 97 acaaagttgagacaattat 115
|||| ||||||||| ||||
Sbjct: 65 acaatgttgagacagttat 83
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 61.9 bits (31), Expect = 3e-09
Identities = 67/79 (84%)
Strand = Plus / Plus
Query: 37 tactccctccgttctaaaataagtgtctcaagcttgatacaattttatactagagatagc 96
|||||||||||| | |||||||||||||||||||| ||||| || ||||| || ||
Sbjct: 5 tactccctccgtcccaaaataagtgtctcaagcttagtacaaccttgtactaaagttaat 64
Query: 97 acaaagttgagacaattat 115
|||||||||||||| ||||
Sbjct: 65 acaaagttgagacatttat 83
>RF00906;MIR1122;AK252392.1/1279-1175 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 60.0 bits (30), Expect = 1e-08
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 41 ccctccgttctaaaataagtgtctcaagcttgatacaattttatactagagatagcacaa 100
|||||||| | ||||||||||||| |||||| ||||||||||||| ||| ||| ||||
Sbjct: 9 ccctccgtcccaaaataagtgtcttaagcttagtacaattttatacatgagctagtacaa 68
Query: 101 agttgagaca 110
|||| |||||
Sbjct: 69 agttaagaca 78
>RF00906;MIR1122;AY663392.1/117099-117203 4565:Triticum aestivum
(bread wheat)
Length = 105
Score = 56.0 bits (28), Expect = 2e-07
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 37 tactccctccgttctaaaataagtgtctcaagcttgatacaattttatacta 88
|||||| |||||||||||||||||||||||| ||| || || |||||||||
Sbjct: 5 tactccttccgttctaaaataagtgtctcaatcttagtataactttatacta 56
>RF00906;MIR1122;X83518.1/7301-7197 4513:Hordeum vulgare
Length = 105
Score = 56.0 bits (28), Expect = 2e-07
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 52 aaaataagtgtctcaagcttgatacaattttatactagagatagcacaaagttgagacaa 111
||||||| |||||||||||| ||||| ||| || ||||| ||| ||||||||||||||
Sbjct: 20 aaaataactgtctcaagcttagtacaactttgtagtagagctagtacaaagttgagacac 79
Query: 112 ttat 115
||||
Sbjct: 80 ttat 83
>RF00906;MIR1122;EU593539.1/914-1018 4513:Hordeum vulgare
Length = 105
Score = 56.0 bits (28), Expect = 2e-07
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 36 ttactccctccgttctaaaataagtgtctcaagcttgatacaattttatactagagatag 95
||||||||||||| | ||||||| ||||| |||||| || || ||||||||||| |||
Sbjct: 4 ttactccctccgtcccaaaataactgtcttaagcttagtataaatttatactagatctag 63
Query: 96 cacaaagttgagacaattat 115
| |||||||||||| ||||
Sbjct: 64 tataaagttgagacagttat 83
>RF00906;MIR1122;AJ400714.1/3663-3767 4565:Triticum aestivum (bread
wheat)
Length = 105
Score = 54.0 bits (27), Expect = 6e-07
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 37 tactccctccgttctaaaataagtgtctcaagcttgatacaattttatactagag 91
|||||||||||| | |||||||||||||||| ||| ||||| ||| ||||||||
Sbjct: 101 tactccctccgtcccaaaataagtgtctcaaccttagtacaactttgtactagag 47
>RF00906;MIR1122;AF474373.1/50497-50394 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 104
Score = 54.0 bits (27), Expect = 6e-07
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 37 tactccctccgttctaaaataagtgtctcaagcttgatacaattttatactagagatagc 96
||||| |||||| | ||||||| |||||||||| | ||||| ||| ||||||| |||
Sbjct: 5 tactcactccgtcccaaaataactgtctcaagcctagtacaactttgtactagaactagt 64
Query: 97 acaaagttgagacaattat 115
|||||||||||||| ||||
Sbjct: 65 acaaagttgagacacttat 83
>RF00906;MIR1122;AF521177.1/206122-206018 4513:Hordeum vulgare
Length = 105
Score = 54.0 bits (27), Expect = 6e-07
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 37 tactccctccgttctaaaataagtgtctcaagcttgatacaattttatactagagatagc 96
|||||||||| || ||||||| ||| ||| |||| ||||| ||| |||||||| |||
Sbjct: 5 tactccctccatttcaaaataattgtttcatgcttagtacaactttgtactagagctagt 64
Query: 97 acaaagttgagacaattat 115
|||||||||||||| ||||
Sbjct: 65 acaaagttgagacatttat 83
>RF00906;MIR1122;DQ995510.1/1615-1718 4513:Hordeum vulgare
Length = 104
Score = 54.0 bits (27), Expect = 6e-07
Identities = 67/79 (84%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 37 tactccctccgttctaaaataagtgtctcaagcttgatacaattttatactagagatagc 96
|||||||||||| ||||||| |||||||| ||| ||||| ||| |||||||| |||
Sbjct: 5 tactccctccgtctcaaaataactgtctcaactttg-tacaactttgtactagagctagt 63
Query: 97 acaaagttgagacaattat 115
|||||||||||||| ||||
Sbjct: 64 acaaagttgagacagttat 82
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 54.0 bits (27), Expect = 6e-07
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 37 tactccctccgttctaaaataagtgtctcaagcttgatacaattttatactagagatagc 96
|||||||||||| |||||||||||||||||| | ||||| ||| ||||| || |||
Sbjct: 5 tactccctccgtctcaaaataagtgtctcaagcctagtacaactttgtactaaagttagt 64
Query: 97 acaaagttgagacaattat 115
|||||||| ||||| ||||
Sbjct: 65 acaaagttaagacacttat 83
>RF00906;MIR1122;AB182945.1/6773-6906 4565:Triticum aestivum (bread
wheat)
Length = 134
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 37 tactccctccgttctaaaataagtgtctca 66
|||||||||||||| |||||||||||||||
Sbjct: 130 tactccctccgttccaaaataagtgtctca 101
>RF00906;MIR1122;DQ445238.1/5626-5730 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 48.1 bits (24), Expect = 4e-05
Identities = 66/80 (82%)
Strand = Plus / Plus
Query: 36 ttactccctccgttctaaaataagtgtctcaagcttgatacaattttatactagagatag 95
||||||||||||| | ||||||| ||||| |||||| || || |||||| |||| |||
Sbjct: 4 ttactccctccgtcccaaaataactgtcttaagcttagtataaatttatattagatctag 63
Query: 96 cacaaagttgagacaattat 115
| |||||||||||| ||||
Sbjct: 64 tataaagttgagacagttat 83
>RF00906;MIR1122;EU282771.1/632-528 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 48.1 bits (24), Expect = 4e-05
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 37 tactccctccgttctaaaataagtgtctcaagcttgatacaattttatactagagatagc 96
|||||||||||| | ||||||| | |||||| ||| ||||| |||||||||||| |||
Sbjct: 5 tactccctccgtcccaaaataactttctcaaacttagtacaactttatactagagctagt 64
Query: 97 acaaagttgaga 108
||||||||||
Sbjct: 65 gtaaagttgaga 76
>RF00906;MIR1122;DQ900687.1/24296-24401 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 106
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 37 tactccctccgttctaaaataagtgtc 63
|||||||||||| ||||||||||||||
Sbjct: 102 tactccctccgtcctaaaataagtgtc 76
>RF00906;MIR1122;EU282768.1/632-528 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 46.1 bits (23), Expect = 2e-04
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 37 tactccctccgttctaaaataagtgtctcaagcttgatacaattttatactagag 91
|||||||||||| | ||||||| | |||||| ||| ||||| ||||||||||||
Sbjct: 5 tactccctccgtcccaaaataactttctcaaacttagtacaactttatactagag 59
>RF00906;MIR1122;AAAA02026408.1/56455-56566 39946:Oryza sativa
Indica Group
Length = 112
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 35 tttactccctccgttctaaaata 57
|||||||||||||||||||||||
Sbjct: 3 tttactccctccgttctaaaata 25
>RF00906;MIR1122;DQ871219.1/88217-88124 85692:Triticum turgidum
subsp. dicoccoides
Length = 94
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 36 ttactccctccgttctaaaata 57
||||||||||||||||||||||
Sbjct: 91 ttactccctccgttctaaaata 70
>RF00906;MIR1122;AACV01007827.1/8284-8145 39947:Oryza sativa
Japonica Group
Length = 140
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 37 tactccctccgttctaaaataa 58
||||||||||||||||||||||
Sbjct: 5 tactccctccgttctaaaataa 26
>RF00906;MIR1122;AC079888.10/111519-111651 39947:Oryza sativa
Japonica Group
Length = 133
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 36 ttactccctccgttctaaaata 57
||||||||||||||||||||||
Sbjct: 4 ttactccctccgttctaaaata 25
