miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AK250831.1/1328-1188 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 141
Score = 280 bits (141), Expect = 6e-75
Identities = 141/141 (100%)
Strand = Plus / Minus
Query: 13 atagtactccctccgtccggaaatacttgttctagaaatgtttgttctagaaatgtacaa 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 atagtactccctccgtccggaaatacttgttctagaaatgtttgttctagaaatgtacaa 82
Query: 73 aatggacgtatctccataactaaaataaatctagatacatctatttctaggacaagtatt 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 aatggacgtatctccataactaaaataaatctagatacatctatttctaggacaagtatt 22
Query: 133 tatgaacagagggagtattac 153
|||||||||||||||||||||
Sbjct: 21 tatgaacagagggagtattac 1
>RF00906;MIR1122;DQ445241.1/4641-4518 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 124
Score = 71.9 bits (36), Expect = 3e-12
Identities = 63/71 (88%), Gaps = 2/71 (2%)
Strand = Plus / Minus
Query: 63 aaatgtacaaaatggacgtatctccataactaaaataaatctagatacatctatttctag 122
||||||| |||||||| |||||| |||| |||||||| |||||||||||||| || |||
Sbjct: 89 aaatgtataaaatggatgtatct--ataagtaaaataagtctagatacatctacttttag 32
Query: 123 gacaagtattt 133
|||||||||||
Sbjct: 31 gacaagtattt 21
Score = 60.0 bits (30), Expect = 1e-08
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 13 atagtactccctccgtccggaaatacttgt 42
||||||||||||||||||||||||||||||
Sbjct: 124 atagtactccctccgtccggaaatacttgt 95
>RF00906;MIR1122;AY643843.1/31186-31309 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 67.9 bits (34), Expect = 4e-11
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 88 ataactaaaataaatctagatacatctatttctaggacaagtatttatgaacagagggag 147
||||||||||||| ||||||||||| |||| |||||||||||||| |||| |||||||
Sbjct: 59 ataactaaaataagtctagatacattcatttttaggacaagtatttccgaacggagggag 118
Query: 148 ta 149
||
Sbjct: 119 ta 120
Score = 56.0 bits (28), Expect = 2e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 17 tactccctccgtccggaaatacttgttctagaaatg 52
|||||||||||||| ||||||||||| |||||||||
Sbjct: 5 tactccctccgtccagaaatacttgtcctagaaatg 40
Score = 50.1 bits (25), Expect = 1e-05
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 115 atttctaggacaagtatttatgaacagagggagtatt 151
||||||||||||||||||| || || |||||||||||
Sbjct: 39 atttctaggacaagtatttctggacggagggagtatt 3
Score = 48.1 bits (24), Expect = 4e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 17 tactccctccgtccggaaatacttgttctagaaatg 52
|||||||||||| ||||||||||||| ||| |||||
Sbjct: 120 tactccctccgttcggaaatacttgtcctaaaaatg 85
>RF00906;MIR1122;DQ445236.1/8526-8403 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 124
Score = 65.9 bits (33), Expect = 2e-10
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 14 tagtactccctccgtccggaaatacttgttcta 46
|||||||||||||||||||||||||||||||||
Sbjct: 123 tagtactccctccgtccggaaatacttgttcta 91
Score = 60.0 bits (30), Expect = 1e-08
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 15 agtactccctccgtccggaaatacttgttctagaaatg 52
|||||||||||||||||||||||||||| | |||||||
Sbjct: 3 agtactccctccgtccggaaatacttgtcccagaaatg 40
>RF00906;MIR1122;CT009625.1/8885-8999 37682:Aegilops tauschii
Length = 115
Score = 63.9 bits (32), Expect = 6e-10
Identities = 68/79 (86%), Gaps = 2/79 (2%)
Strand = Plus / Plus
Query: 71 aaaatggacgtatctccataactaaaataaatctagatacatctatttctaggacaagta 130
|||||||| |||||| |||||||||||| |||||||||||| |||||| |||| ||||
Sbjct: 35 aaaatggatgtatct--ataactaaaatacatctagatacattcatttcttggacgagta 92
Query: 131 tttatgaacagagggagta 149
|| ||||||||||||||
Sbjct: 93 atttcgaacagagggagta 111
>RF00906;MIR1122;AF474373.1/14703-14580 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 61.9 bits (31), Expect = 3e-09
Identities = 73/86 (84%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 48 aaatgtttgttctagaaatgtacaaaatggacgtatctccataactaaaataaatctaga 107
|||| ||||| ||||||||| | | |||||| ||||| |||||||||||||||| ||||
Sbjct: 21 aaatatttgtcctagaaatggatataatggatgtatc--cataactaaaataaatttaga 78
Query: 108 tacatctatttctaggacaagtattt 133
||||| || | ||||||||||||||
Sbjct: 79 tacattcatctttaggacaagtattt 104
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 17 tactccctccgtccggaaatacttgt 42
||||||| ||||||||||||||||||
Sbjct: 120 tactccccccgtccggaaatacttgt 95
>RF00906;MIR1122;EU096089.1/6299-6422 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 124
Score = 60.0 bits (30), Expect = 1e-08
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 88 ataactaaaataaatctagatacatctatttctaggacaagtattt 133
||||||||||||| ||||||||||| || ||||||||||||||||
Sbjct: 59 ataactaaaataagtctagatacattcatctctaggacaagtattt 104
Score = 58.0 bits (29), Expect = 4e-08
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 16 gtactccctccgtccggaaatacttgttctaga 48
||||||||||||||||||||||||||| |||||
Sbjct: 121 gtactccctccgtccggaaatacttgtcctaga 89
Score = 56.0 bits (28), Expect = 2e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 17 tactccctccgtccggaaatacttgttctagaaatg 52
|||||||||||||||||||||||||| ||| |||||
Sbjct: 5 tactccctccgtccggaaatacttgtcctaaaaatg 40
>RF00906;MIR1122;AK249975.1/2279-2156 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 124
Score = 60.0 bits (30), Expect = 1e-08
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 88 ataactaaaataaatctagatacatctatttctaggacaagtattt 133
||||||||||||| |||| |||||||||||| || |||||||||||
Sbjct: 66 ataactaaaataattctacatacatctatttttaagacaagtattt 21
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 17 tactccctccgtccggaaatacttgt 42
|||||||||| |||||||||||||||
Sbjct: 5 tactccctccatccggaaatacttgt 30
>RF00906;MIR1122;AY853252.1/156228-156351 4513:Hordeum vulgare
Length = 124
Score = 60.0 bits (30), Expect = 1e-08
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 88 ataactaaaataaatctagatacatctatttctaggacaagtattt 133
||||||||||||| ||||||| |||| |||| ||||||||||||||
Sbjct: 66 ataactaaaataagtctagattcatccatttttaggacaagtattt 21
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 16 gtactccctccgtccggaaatacttg 41
||||||||||||||||||||||||||
Sbjct: 121 gtactccctccgtccggaaatacttg 96
>RF00906;MIR1122;AY951945.1/93583-93458 4568:Triticum monococcum
Length = 126
Score = 58.0 bits (29), Expect = 4e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 14 tagtactccctccgtccggaaatacttgt 42
|||||||||||||||||||||||||||||
Sbjct: 2 tagtactccctccgtccggaaatacttgt 30
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 13 atagtactccctccgtccggaaatacttgt 42
||||||||||||||||||| ||||||||||
Sbjct: 126 atagtactccctccgtccgaaaatacttgt 97
>RF00906;MIR1122;AY235466.1/780-656 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 58.0 bits (29), Expect = 4e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 14 tagtactccctccgtccggaaatacttgt 42
|||||||||||||||||||||||||||||
Sbjct: 2 tagtactccctccgtccggaaatacttgt 30
>RF00906;MIR1122;EU835980.1/752-629 4565:Triticum aestivum (bread
wheat)
Length = 124
Score = 58.0 bits (29), Expect = 4e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 16 gtactccctccgtccggaaatacttgttctagaaatg 52
|||||||||||||||| |||||||||| |||||||||
Sbjct: 4 gtactccctccgtccgcaaatacttgtcctagaaatg 40
Score = 58.0 bits (29), Expect = 4e-08
Identities = 68/80 (85%), Gaps = 2/80 (2%)
Strand = Plus / Plus
Query: 54 ttgttctagaaatgtacaaaatggacgtatctccataactaaaataaatctagatacatc 113
|||| ||||||||| | ||||| || |||||| ||||||||||||| |||| ||||| |
Sbjct: 27 ttgtcctagaaatgaataaaattgatgtatct--ataactaaaataagtctacatacaac 84
Query: 114 tatttctaggacaagtattt 133
||||||||| |||||||||
Sbjct: 85 catttctagggcaagtattt 104
>RF00906;MIR1122;AF474373.1/52258-52134 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 58.0 bits (29), Expect = 4e-08
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 90 aactaaaataaatctagatacatctatttctaggacaagtatttatgaacagagggagta 149
|||||||||| ||||||||||||| ||| ||| ||||| ||||| | ||||||||||||
Sbjct: 64 aactaaaatacatctagatacatccattcctatgacaaatatttccggacagagggagta 5
Query: 150 t 150
|
Sbjct: 4 t 4
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 17 tactccctccgtccggaaatacttgt 42
|||||||||||||||||| |||||||
Sbjct: 121 tactccctccgtccggaattacttgt 96
>RF00906;MIR1122;EU282650.1/1397-1273 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 125
Score = 56.0 bits (28), Expect = 2e-07
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 90 aactaaaataaatctagatacatctatttctaggacaagtattt 133
|||||||||| ||||||||||||| ||| ||| |||||||||||
Sbjct: 64 aactaaaatacatctagatacatccattcctatgacaagtattt 21
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 17 tactccctccgtccggaaatacttgt 42
||||||| ||||||||||||||||||
Sbjct: 5 tactcccgccgtccggaaatacttgt 30
>RF00906;MIR1122;AB238931.1/2749-2883 4568:Triticum monococcum
Length = 135
Score = 54.0 bits (27), Expect = 6e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 16 gtactccctccgtccggaaatacttgt 42
|||||||||||||||||||||||||||
Sbjct: 132 gtactccctccgtccggaaatacttgt 106
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 14 tagtactccctccgtccggaaatacttgt 42
|||||||||||||||||| ||||||||||
Sbjct: 2 tagtactccctccgtccgaaaatacttgt 30
>RF00906;MIR1122;L41869.1/3010-3134 4513:Hordeum vulgare
Length = 125
Score = 54.0 bits (27), Expect = 6e-07
Identities = 54/62 (87%), Gaps = 2/62 (3%)
Strand = Plus / Minus
Query: 72 aaatggacgtatctccataactaaaataaatctagatacatctatttctaggacaagtat 131
||||||| |||||| |||||||||||| ||||||||||||| ||| | ||||||||||
Sbjct: 80 aaatggatgtatct--ataactaaaatacatctagatacatccattctttggacaagtat 23
Query: 132 tt 133
||
Sbjct: 22 tt 21
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 17 tactccctccgtccggaaatacttgt 42
|||||||| |||||||||||||||||
Sbjct: 5 tactcccttcgtccggaaatacttgt 30
>RF00906;MIR1122;AY485644.1/203741-203618 4568:Triticum monococcum
Length = 124
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 17 tactccctccgtccggaaatacttgt 42
||||||||||||||||||||||||||
Sbjct: 120 tactccctccgtccggaaatacttgt 95
>RF00906;MIR1122;AB298185.1/18759-18893 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 17 tactccctccgtccggaaatacttgt 42
||||||||||||||||||||||||||
Sbjct: 131 tactccctccgtccggaaatacttgt 106
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 17 tactccctccgtccggaaatacttgt 42
||||||||||||||||||||| ||||
Sbjct: 5 tactccctccgtccggaaatatttgt 30
>RF00906;MIR1122;AF325196.1/33744-33620 4565:Triticum aestivum
(bread wheat)
Length = 125
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 17 tactccctccgtccggaaatacttgt 42
||||||||||||||||||||||||||
Sbjct: 121 tactccctccgtccggaaatacttgt 96
>RF00906;MIR1122;AY235464.1/714-838 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 17 tactccctccgtccggaaatacttgt 42
||||||||||||||||||||||||||
Sbjct: 121 tactccctccgtccggaaatacttgt 96
Score = 48.1 bits (24), Expect = 4e-05
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 90 aactaaaataaatctagatacatctatttctaggacaagtatttatgaacagagggagta 149
|||||||||| ||||||||||||| ||| | ||||||||||| | || |||||||||
Sbjct: 62 aactaaaatacatctagatacatccattcccccgacaagtatttccggacggagggagta 121
Query: 150 ttac 153
||||
Sbjct: 122 ttac 125
>RF00906;MIR1122;AY963808.1/10854-10720 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 17 tactccctccgtccggaaatacttgt 42
||||||||||||||||||||||||||
Sbjct: 5 tactccctccgtccggaaatacttgt 30
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 17 tactccctccgtccggaaatacttgt 42
||||||||||||||| ||||||||||
Sbjct: 131 tactccctccgtccgaaaatacttgt 106
>RF00906;MIR1122;DQ145552.1/668-803 4573:Aegilops speltoides
Length = 136
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 17 tactccctccgtccggaaatacttgt 42
||||||||||||||||||||||||||
Sbjct: 132 tactccctccgtccggaaatacttgt 107
>RF00906;MIR1122;BT009606.1/1324-1200 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 50.1 bits (25), Expect = 1e-05
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 93 taaaataaatctagatacatctatttctaggacaagtatttatgaacagagggagta 149
||||||| |||||||||||| |||||| |||| |||| || ||||| |||||||||
Sbjct: 65 taaaatacatctagatacattcatttcttggacgagtaattctgaacggagggagta 121
>RF00906;MIR1122;FJ427399.1/11963-11864 4571:Triticum turgidum
Length = 100
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 15 agtactccctccgtccggaaatacttgt 42
||||||||||||||||| ||||||||||
Sbjct: 3 agtactccctccgtccgaaaatacttgt 30
>RF00906;MIR1122;EF540321.1/236564-236678 4571:Triticum turgidum
Length = 115
Score = 48.1 bits (24), Expect = 4e-05
Identities = 42/47 (89%), Gaps = 2/47 (4%)
Strand = Plus / Minus
Query: 72 aaatggacgtatctccataactaaaataaatctagatacatctattt 118
||||||| |||||| |||||||||||| ||||||||||||| ||||
Sbjct: 80 aaatggatgtatct--ataactaaaatacatctagatacatccattt 36
>RF00906;MIR1122;CT009585.1/3980-4094 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 48.1 bits (24), Expect = 4e-05
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 90 aactaaaataaatctagatacatctatttctaggacaagtattt 133
|||||||||| ||||||||| ||| ||||| | |||||||||||
Sbjct: 52 aactaaaatacatctagatatatccatttcaatgacaagtattt 95
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 17 tactccctccgtccggaaatacttgt 42
||||||||||||||| ||||||||||
Sbjct: 111 tactccctccgtccgaaaatacttgt 86
>RF00906;MIR1122;EF028786.1/1091-968 4565:Triticum aestivum (bread
wheat)
Length = 124
Score = 48.1 bits (24), Expect = 4e-05
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 90 aactaaaataaatctagatacatctatttctaggacaagtattt 133
|||||||||| |||||||||||| |||||| |||||||||||
Sbjct: 64 aactaaaatacgtctagatacatcaatttctcagacaagtattt 21
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 16 gtactccctccgtccggaaatacttgt 42
|||||||||||||||| ||||||||||
Sbjct: 4 gtactccctccgtccgaaaatacttgt 30
>RF00906;MIR1122;EU117148.1/1866-1980 4571:Triticum turgidum
Length = 115
Score = 48.1 bits (24), Expect = 4e-05
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 90 aactaaaataaatctagatacatctatttctaggacaagtatttatgaacagagggagta 149
|||||||||| ||||||||||||| |||||| ||| |||| || |||| |||||||||
Sbjct: 64 aactaaaatacatctagatacatccatttctgcgacgagtaattcagaacggagggagta 5
>RF00906;MIR1122;AY951945.1/36609-36485 4568:Triticum monococcum
Length = 125
Score = 48.1 bits (24), Expect = 4e-05
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 90 aactaaaataaatctagatacatctatttctaggacaagtatttatgaacagagggagta 149
|||||||||| ||||||||||| | || || | ||||||||||| | ||||||||||||
Sbjct: 64 aactaaaatacatctagatacacccatctcaatgacaagtattttcggacagagggagta 5
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 13 atagtactccctccgtccggaaatacttgt 42
||||||||||||| ||||| ||||||||||
Sbjct: 125 atagtactccctctgtccgaaaatacttgt 96
>RF00906;MIR1122;EU399684.1/4485-4371 4550:Secale cereale (rye)
Length = 115
Score = 48.1 bits (24), Expect = 4e-05
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 90 aactaaaataaatctagatacatctatttctaggacaagtatttatgaacagagggagta 149
|||||||||| |||||||||||| |||||| |||||||| || |||| |||||||||
Sbjct: 52 aactaaaatacgtctagatacatccatttctgagacaagtaattccgaacggagggagta 111
>RF00906;MIR1122;EU282564.1/350-463 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 114
Score = 48.1 bits (24), Expect = 4e-05
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 90 aactaaaataaatctagatacatctatttctaggacaagtatttatgaacagagggagta 149
|||| ||||| ||||||||||||| ||||| ||||||||||| | ||||||||||||
Sbjct: 64 aactgaaatacatctagatacatccatttccgcgacaagtatttcgggacagagggagta 5
>RF00906;MIR1122;AF521177.1/27342-27466 4513:Hordeum vulgare
Length = 125
Score = 48.1 bits (24), Expect = 4e-05
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 88 ataactaaaataaatctagatacatctatttctaggacaagtatttatgaacagagggag 147
|||| |||||||||||||||||||| || |||| |||||||||| |||| |||| ||
Sbjct: 66 ataattaaaataaatctagatacattcatctctaaaacaagtatttccgaacggaggtag 7
Query: 148 tatt 151
||||
Sbjct: 6 tatt 3
>RF00906;MIR1122;AF548379.1/5968-6092 37682:Aegilops tauschii
Length = 125
Score = 48.1 bits (24), Expect = 4e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 17 tactccctccgtccggaaatacttgttctagaaatg 52
|||||||||||||||||| |||||||| |||||||
Sbjct: 121 tactccctccgtccggaactacttgttgcagaaatg 86
>RF00906;MIR1122;X13580.1/135-24 4565:Triticum aestivum (bread
wheat)
Length = 112
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 90 aactaaaataaatctagatacatctatttct 120
|||||||||| | ||||||||||||||||||
Sbjct: 64 aactaaaatacaactagatacatctatttct 34
>RF00906;MIR1122;AY533103.1/332-199 4565:Triticum aestivum (bread
wheat)
Length = 134
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 16 gtactccctccgtccggaaatacttgt 42
|||||||||||||||| ||||||||||
Sbjct: 131 gtactccctccgtccgaaaatacttgt 105
>RF00906;MIR1122;AY368673.1/196592-196716 4571:Triticum turgidum
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 16 gtactccctccgtccggaaatacttgt 42
|||||||||| ||||||||||||||||
Sbjct: 122 gtactccctctgtccggaaatacttgt 96
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 17 tactccctccgtccggaaatacttgt 42
|||||||||||||| |||||||||||
Sbjct: 5 tactccctccgtcctgaaatacttgt 30
>RF00906;MIR1122;AJ300144.1/1569-1477 4513:Hordeum vulgare
Length = 93
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 124 acaagtatttatgaacagagggagtat 150
||||||||||| |||||||||||||||
Sbjct: 64 acaagtatttaggaacagagggagtat 90
>RF00906;MIR1122;DQ537336.1/120340-120474 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 17 tactccctccgtccggaaatacttgt 42
|||| |||||||||||||||||||||
Sbjct: 5 tacttcctccgtccggaaatacttgt 30
>RF00906;MIR1122;AM932683.1/23310-23434 4565:Triticum aestivum
(bread wheat)
Length = 125
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 17 tactccctccgtccggaaatacttgt 42
|||||| |||||||||||||||||||
Sbjct: 5 tactccttccgtccggaaatacttgt 30
>RF00906;MIR1122;DQ904440.1/75385-75530 52163:Triticum monococcum
subsp. aegilopoides
Length = 146
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 17 tactccctccgtccggaaatacttgt 42
||||||||||||||| ||||||||||
Sbjct: 142 tactccctccgtccgaaaatacttgt 117
>RF00906;MIR1122;AY951945.1/37511-37377 4568:Triticum monococcum
Length = 135
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 17 tactccctccgtccggaaatacttgt 42
||||||||||||||| ||||||||||
Sbjct: 131 tactccctccgtccgaaaatacttgt 106
>RF00906;MIR1122;CT009586.1/21808-21942 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 17 tactccctccgtccggaaatacttgt 42
||||||||||||||| ||||||||||
Sbjct: 131 tactccctccgtccgaaaatacttgt 106
>RF00906;MIR1122;EF104384.1/242-122 4567:Triticum turgidum subsp.
durum (durum wheat)
Length = 121
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 17 tactccctccgtccggaaatacttgt 42
||||||||||||||||||| ||||||
Sbjct: 118 tactccctccgtccggaaaaacttgt 93
>RF00906;MIR1122;AY137517.1/112-234 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 123
Score = 44.1 bits (22), Expect = 6e-04
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 88 ataactaaaataaatctagatacatctatttctaggacaagtattt 133
||||||||||||| ||||||||||| ||||| | |||| ||||||
Sbjct: 58 ataactaaaataagtctagatacattcatttcgaagacaggtattt 103
>RF00906;MIR1122;EU282260.1/1308-1219 97361:Hordeum murinum
Length = 90
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 124 acaagtatttatgaacagagggagta 149
||||||||||| ||||||||||||||
Sbjct: 30 acaagtatttaggaacagagggagta 5
>RF00906;MIR1122;EU282737.1/1022-902 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 121
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 17 tactccctccgtccggaaatacttgt 42
|||||||||||||||||| |||||||
Sbjct: 121 tactccctccgtccggaattacttgt 96
>RF00906;MIR1122;AF459085.1/1867-1743 4513:Hordeum vulgare
Length = 125
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 17 tactccctccgtccggaaatacttgt 42
|||||||||||||||||| |||||||
Sbjct: 5 tactccctccgtccggaagtacttgt 30
Score = 44.1 bits (22), Expect = 6e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 90 aactaaaataaatctagatacatctatttctaggacaa 127
|||||||||| |||||||||||| ||||||| |||||
Sbjct: 62 aactaaaatacgtctagatacatccatttctatgacaa 99
>RF00906;MIR1122;AF022725.1/11631-11507 4513:Hordeum vulgare
Length = 125
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 17 tactccctccgtccggaaatacttgt 42
|||||||||||||||||| |||||||
Sbjct: 5 tactccctccgtccggaattacttgt 30
>RF00906;MIR1122;AF521177.1/9890-9767 4513:Hordeum vulgare
Length = 124
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 17 tactccctccgtccggaaatacttgt 42
|||| |||||||||||||||||||||
Sbjct: 120 tactacctccgtccggaaatacttgt 95
