miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY943294.1/62260-62364 112509:Hordeum vulgare
           subsp. vulgare (domesticated barley)
          Length = 105

 Score =  135 bits (68), Expect = 1e-31
 Identities = 86/92 (93%)
 Strand = Plus / Plus

                                                                       
Query: 12  tactccctccgtctcaaaataagtgtcttaagcttactacaattttgtactatctctaat 71
           ||||||||||||  |||||||||||||||||||||| |||||||||||||||  ||||||
Sbjct: 5   tactccctccgttccaaaataagtgtcttaagcttaatacaattttgtactaaatctaat 64

                                           
Query: 72  acaaagttgagacagttattttgagacggagg 103
           ||||||||||||||||||||||| ||||||||
Sbjct: 65  acaaagttgagacagttattttgggacggagg 96




>RF00906;MIR1122;AJ234485.1/114-218 4513:Hordeum vulgare
          Length = 105

 Score =  123 bits (62), Expect = 5e-28
 Identities = 86/94 (91%)
 Strand = Plus / Plus

                                                                       
Query: 12  tactccctccgtctcaaaataagtgtcttaagcttactacaattttgtactatctctaat 71
           ||||||||||||||||||||||||||||||| |||| |||||||||||||||   ||| |
Sbjct: 5   tactccctccgtctcaaaataagtgtcttaatcttagtacaattttgtactagagctagt 64

                                             
Query: 72  acaaagttgagacagttattttgagacggaggga 105
           |||| |||||||||||||||||||||| ||||||
Sbjct: 65  acaatgttgagacagttattttgagacagaggga 98




>RF00906;MIR1122;AJ249141.1/1014-910 4513:Hordeum vulgare
          Length = 105

 Score =  119 bits (60), Expect = 9e-27
 Identities = 87/96 (90%)
 Strand = Plus / Plus

                                                                       
Query: 10  tatactccctccgtctcaaaataagtgtcttaagcttactacaattttgtactatctcta 69
           |||| |||||| |||  ||||||||||||||||||||| ||||| |||||||||   |||
Sbjct: 3   tatattccctcggtcctaaaataagtgtcttaagcttagtacaactttgtactagagcta 62

                                               
Query: 70  atacaaagttgagacagttattttgagacggaggga 105
           ||||||||||||||||||||||||||||||||||||
Sbjct: 63  atacaaagttgagacagttattttgagacggaggga 98



 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                          
Query: 9   ttatactccctccgtctcaaaataagtgtct 39
           ||||||||||||||||||||||||| |||||
Sbjct: 104 ttatactccctccgtctcaaaataactgtct 74




>RF00906;MIR1122;AY133251.1/901-1005 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score =  115 bits (58), Expect = 1e-25
 Identities = 88/98 (89%)
 Strand = Plus / Plus

                                                                       
Query: 8   attatactccctccgtctcaaaataagtgtcttaagcttactacaattttgtactatctc 67
           ||||||||||||||||  ||||||||||||||| ||| || |||||||||||||||   |
Sbjct: 1   attatactccctccgttccaaaataagtgtcttgagcgtagtacaattttgtactagagc 60

                                                 
Query: 68  taatacaaagttgagacagttattttgagacggaggga 105
           || |||||||||||||||||||||||| ||||||||||
Sbjct: 61  tagtacaaagttgagacagttattttgggacggaggga 98




>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
          Length = 105

 Score =  115 bits (58), Expect = 1e-25
 Identities = 88/98 (89%)
 Strand = Plus / Plus

                                                                       
Query: 8   attatactccctccgtctcaaaataagtgtcttaagcttactacaattttgtactatctc 67
           ||||||||||||||||| |||||||||||||| ||||||| ||||| |||||||||    
Sbjct: 1   attatactccctccgtcccaaaataagtgtctcaagcttagtacaactttgtactaaagt 60

                                                 
Query: 68  taatacaaagttgagacagttattttgagacggaggga 105
           |||||||||||||||||| |||||||| ||||||||||
Sbjct: 61  taatacaaagttgagacatttattttgggacggaggga 98




>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
          Length = 105

 Score =  107 bits (54), Expect = 3e-23
 Identities = 87/98 (88%)
 Strand = Plus / Plus

                                                                       
Query: 8   attatactccctccgtctcaaaataagtgtcttaagcttactacaattttgtactatctc 67
           ||||||||||||||||| |||||||||||||| ||||||| |||||  ||||||||    
Sbjct: 1   attatactccctccgtcccaaaataagtgtctcaagcttagtacaaccttgtactaaagt 60

                                                 
Query: 68  taatacaaagttgagacagttattttgagacggaggga 105
           |||||||||||||||||| |||||||| ||||||||||
Sbjct: 61  taatacaaagttgagacatttattttgggacggaggga 98




>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score = 99.6 bits (50), Expect = 8e-21
 Identities = 83/94 (88%)
 Strand = Plus / Plus

                                                                       
Query: 12  tactccctccgtctcaaaataagtgtcttaagcttactacaattttgtactatctctaat 71
           ||||||||||||| |||||||||||||| ||||||| |  ||||||||||||   ||| |
Sbjct: 5   tactccctccgtcccaaaataagtgtctcaagcttagtgtaattttgtactacagctagt 64

                                             
Query: 72  acaaagttgagacagttattttgagacggaggga 105
           |||||||||||||| |||||||| ||||||||||
Sbjct: 65  acaaagttgagacacttattttgggacggaggga 98



 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                         
Query: 10  tatactccctccgtctcaaaataagtgtct 39
           ||||||||||||||| ||||||||||||||
Sbjct: 103 tatactccctccgtcccaaaataagtgtct 74




>RF00906;MIR1122;EU593539.1/914-1018 4513:Hordeum vulgare
          Length = 105

 Score = 99.6 bits (50), Expect = 8e-21
 Identities = 83/94 (88%)
 Strand = Plus / Plus

                                                                       
Query: 12  tactccctccgtctcaaaataagtgtcttaagcttactacaattttgtactatctctaat 71
           ||||||||||||| |||||||| ||||||||||||| || || ||| |||||  |||| |
Sbjct: 5   tactccctccgtcccaaaataactgtcttaagcttagtataaatttatactagatctagt 64

                                             
Query: 72  acaaagttgagacagttattttgagacggaggga 105
           | ||||||||||||||||||||| ||||||||||
Sbjct: 65  ataaagttgagacagttattttgggacggaggga 98




>RF00906;MIR1122;DQ445238.1/5626-5730 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score = 91.7 bits (46), Expect = 2e-18
 Identities = 82/94 (87%)
 Strand = Plus / Plus

                                                                       
Query: 12  tactccctccgtctcaaaataagtgtcttaagcttactacaattttgtactatctctaat 71
           ||||||||||||| |||||||| ||||||||||||| || || ||| || ||  |||| |
Sbjct: 5   tactccctccgtcccaaaataactgtcttaagcttagtataaatttatattagatctagt 64

                                             
Query: 72  acaaagttgagacagttattttgagacggaggga 105
           | ||||||||||||||||||||| ||||||||||
Sbjct: 65  ataaagttgagacagttattttgggacggaggga 98




>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
          Length = 105

 Score = 91.7 bits (46), Expect = 2e-18
 Identities = 82/94 (87%)
 Strand = Plus / Plus

                                                                       
Query: 12  tactccctccgtctcaaaataagtgtcttaagcttactacaattttgtactatctctaat 71
           |||||||||||||||||||||||||||| |||| || ||||| |||||||||    || |
Sbjct: 5   tactccctccgtctcaaaataagtgtctcaagcctagtacaactttgtactaaagttagt 64

                                             
Query: 72  acaaagttgagacagttattttgagacggaggga 105
           |||||||| ||||| |||||||| ||||||||||
Sbjct: 65  acaaagttaagacacttattttgggacggaggga 98



 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                          
Query: 12  tactccctccgtctcaaaataagtgtcttaa 42
           ||||||||||||| |||||||||||||||||
Sbjct: 101 tactccctccgtcccaaaataagtgtcttaa 71



 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 78  ttgagacagttattttgagacggaggga 105
           |||||||| |||||||||||||||||||
Sbjct: 35  ttgagacacttattttgagacggaggga 8




>RF00906;MIR1122;AK252392.1/1279-1175 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score = 89.7 bits (45), Expect = 8e-18
 Identities = 84/97 (86%)
 Strand = Plus / Plus

                                                                       
Query: 9   ttatactccctccgtctcaaaataagtgtcttaagcttactacaattttgtactatctct 68
           |||||| ||||||||| |||||||||||||||||||||| ||||||||| |||     ||
Sbjct: 2   ttataccccctccgtcccaaaataagtgtcttaagcttagtacaattttatacatgagct 61

                                                
Query: 69  aatacaaagttgagacagttattttgagacggaggga 105
           | ||||||||| |||||| ||||||| ||||||||||
Sbjct: 62  agtacaaagttaagacagatattttgggacggaggga 98




>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
           subsp. dicoccoides
          Length = 105

 Score = 85.7 bits (43), Expect = 1e-16
 Identities = 82/95 (86%)
 Strand = Plus / Plus

                                                                       
Query: 11  atactccctccgtctcaaaataagtgtcttaagcttactacaattttgtactatctctaa 70
           |||||||||||||| ||||||||||||||| |||||| || || |||||||||    || 
Sbjct: 4   atactccctccgtcccaaaataagtgtcttgagcttagtaaaaatttgtactagagatag 63

                                              
Query: 71  tacaaagttgagacagttattttgagacggaggga 105
           ||||||||||||||| |||||||| || |||||||
Sbjct: 64  tacaaagttgagacacttattttgggatggaggga 98




>RF00906;MIR1122;AK249560.1/988-1092 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score = 85.7 bits (43), Expect = 1e-16
 Identities = 85/99 (85%)
 Strand = Plus / Minus

                                                                       
Query: 12  tactccctccgtctcaaaataagtgtcttaagcttactacaattttgtactatctctaat 71
           ||||||||||||| |||||||| ||||| || |||| ||||| ||||||||||  ||| |
Sbjct: 101 tactccctccgtcccaaaataactgtctcaaacttaatacaagtttgtactatagctagt 42

                                                  
Query: 72  acaaagttgagacagttattttgagacggagggactatc 110
           | |||||||||||| |||||||| |||||| ||| ||||
Sbjct: 41  ataaagttgagacacttattttgggacggatggagtatc 3



 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 78  ttgagacagttattttgagacggaggga 105
           ||||||||||||||||| ||||||||||
Sbjct: 71  ttgagacagttattttgggacggaggga 98




>RF00906;MIR1122;DQ995510.1/1615-1718 4513:Hordeum vulgare
          Length = 104

 Score = 85.7 bits (43), Expect = 1e-16
 Identities = 83/95 (87%), Gaps = 1/95 (1%)
 Strand = Plus / Plus

                                                                       
Query: 11  atactccctccgtctcaaaataagtgtcttaagcttactacaattttgtactatctctaa 70
           ||||||||||||||||||||||| ||||| || |||  ||||| |||||||||   ||| 
Sbjct: 4   atactccctccgtctcaaaataactgtctcaa-ctttgtacaactttgtactagagctag 62

                                              
Query: 71  tacaaagttgagacagttattttgagacggaggga 105
           |||||||||||||||||||||||| || |||||||
Sbjct: 63  tacaaagttgagacagttattttgggatggaggga 97



 Score = 69.9 bits (35), Expect = 7e-12
 Identities = 35/35 (100%)
 Strand = Plus / Minus

                                              
Query: 71  tacaaagttgagacagttattttgagacggaggga 105
           |||||||||||||||||||||||||||||||||||
Sbjct: 42  tacaaagttgagacagttattttgagacggaggga 8




>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum (bread
           wheat)
          Length = 104

 Score = 81.8 bits (41), Expect = 2e-15
 Identities = 84/97 (86%), Gaps = 1/97 (1%)
 Strand = Plus / Plus

                                                                       
Query: 9   ttatactccctccgtctcaaaataagtgtcttaagcttactacaattttgtactatctct 68
           |||||||||||||||| |||||||||||||| || |||| ||||||||| |||||    |
Sbjct: 2   ttatactccctccgtcccaaaataagtgtctcaaccttagtacaattttatactagagtt 61

                                                
Query: 69  aatacaaagttgagacagttattttgagacggaggga 105
           | ||||||| ||||||| |||||||| ||||||||||
Sbjct: 62  agtacaaag-tgagacacttattttgggacggaggga 97



 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 11  atactccctccgtctcaaaataagtgtct 39
           |||||||||||||| ||||||||||||||
Sbjct: 101 atactccctccgtcccaaaataagtgtct 73




>RF00906;MIR1122;DQ175992.1/50-154 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score = 81.8 bits (41), Expect = 2e-15
 Identities = 83/97 (85%)
 Strand = Plus / Plus

                                                                       
Query: 9   ttatactccctccgtctcaaaataagtgtcttaagcttactacaattttgtactatctct 68
           |||||||| |||||| | ||||||||||||||||||||| || |||||| |||||   ||
Sbjct: 2   ttatactctctccgttttaaaataagtgtcttaagcttagtataattttatactagagct 61

                                                
Query: 69  aatacaaagttgagacagttattttgagacggaggga 105
           |  |||||||| ||||| |||||||| ||||||||||
Sbjct: 62  agaacaaagttaagacaattattttgggacggaggga 98



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 12  tactccctccgtctcaaaataagtgtcttaa 42
           ||||||||||||| |||||||| ||||||||
Sbjct: 101 tactccctccgtcccaaaataattgtcttaa 71




>RF00906;MIR1122;X83518.1/7301-7197 4513:Hordeum vulgare
          Length = 105

 Score = 81.8 bits (41), Expect = 2e-15
 Identities = 74/85 (87%)
 Strand = Plus / Plus

                                                                      
Query: 10 tatactccctccgtctcaaaataagtgtcttaagcttactacaattttgtactatctcta 69
          |||||||||||| ||||||||||| ||||| ||||||| ||||| |||||| ||   |||
Sbjct: 3  tatactccctccatctcaaaataactgtctcaagcttagtacaactttgtagtagagcta 62

                                   
Query: 70 atacaaagttgagacagttattttg 94
           ||||||||||||||| ||||||||
Sbjct: 63 gtacaaagttgagacacttattttg 87



 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 78  ttgagacagttattttgagacggaggga 105
           |||||||||||||||||||| |||||||
Sbjct: 35  ttgagacagttattttgagatggaggga 8




>RF00906;MIR1122;AF521177.1/206122-206018 4513:Hordeum vulgare
          Length = 105

 Score = 77.8 bits (39), Expect = 3e-14
 Identities = 81/95 (85%)
 Strand = Plus / Plus

                                                                       
Query: 11  atactccctccgtctcaaaataagtgtcttaagcttactacaattttgtactatctctaa 70
           ||||||||||| | ||||||||| ||| | | ||||| ||||| |||||||||   ||| 
Sbjct: 4   atactccctccatttcaaaataattgtttcatgcttagtacaactttgtactagagctag 63

                                              
Query: 71  tacaaagttgagacagttattttgagacggaggga 105
           ||||||||||||||| ||||||||| |||||||||
Sbjct: 64  tacaaagttgagacatttattttgaaacggaggga 98




>RF00906;MIR1122;AF474373.1/50497-50394 112509:Hordeum vulgare
          subsp. vulgare (domesticated barley)
          Length = 104

 Score = 71.9 bits (36), Expect = 2e-12
 Identities = 72/84 (85%)
 Strand = Plus / Plus

                                                                      
Query: 11 atactccctccgtctcaaaataagtgtcttaagcttactacaattttgtactatctctaa 70
          |||||| ||||||| |||||||| ||||| |||| || ||||| |||||||||   ||| 
Sbjct: 4  atactcactccgtcccaaaataactgtctcaagcctagtacaactttgtactagaactag 63

                                  
Query: 71 tacaaagttgagacagttattttg 94
          ||||||||||||||| ||||||||
Sbjct: 64 tacaaagttgagacacttattttg 87




>RF00906;MIR1122;AY268139.1/69673-69778 4513:Hordeum vulgare
          Length = 106

 Score = 69.9 bits (35), Expect = 7e-12
 Identities = 81/95 (85%), Gaps = 1/95 (1%)
 Strand = Plus / Plus

                                                                       
Query: 10  tatactccctccgtctcaaaataagtgtcttaagcttac-tacaattttgtactatctct 68
           |||||||||||||| ||||||||| ||| |||| ||||  ||||||||| ||||     |
Sbjct: 3   tatactccctccgtttcaaaataactgttttaaacttaaatacaattttatactgaaatt 62

                                              
Query: 69  aatacaaagttgagacagttattttgagacggagg 103
           |||| |||||| |||||||||||||||||||||||
Sbjct: 63  aatataaagttaagacagttattttgagacggagg 97



 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                             
Query: 9   ttatactccctccgtctcaaaataagtgtcttaa 42
           ||||||| ||||||||||||||||| ||||||||
Sbjct: 105 ttatacttcctccgtctcaaaataactgtcttaa 72




>RF00906;MIR1122;DQ445236.1/13423-13319 112509:Hordeum vulgare
           subsp. vulgare (domesticated barley)
          Length = 105

 Score = 69.9 bits (35), Expect = 7e-12
 Identities = 80/95 (84%)
 Strand = Plus / Minus

                                                                       
Query: 11  atactccctccgtctcaaaataagtgtcttaagcttactacaattttgtactatctctaa 70
           |||||||||||||  |||||||| | ||| ||||||| ||||| |||||||||   ||| 
Sbjct: 102 atactccctccgttccaaaataactatctcaagcttagtacaactttgtactagagctag 43

                                              
Query: 71  tacaaagttgagacagttattttgagacggaggga 105
           |||||| |||||||| ||||||||  |||||||||
Sbjct: 42  tacaaatttgagacacttattttggaacggaggga 8



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 9  ttatactccctccgtctcaaaataagtgtct 39
          |||||||||||||||  ||||||||||||||
Sbjct: 2  ttatactccctccgttccaaaataagtgtct 32




>RF00906;MIR1122;DQ901436.1/1229-1333 4565:Triticum aestivum (bread
           wheat)
          Length = 105

 Score = 67.9 bits (34), Expect = 3e-11
 Identities = 79/94 (84%)
 Strand = Plus / Minus

                                                                       
Query: 12  tactccctccgtctcaaaataagtgtcttaagcttactacaattttgtactatctctaat 71
           ||||| |||| ||||||||||||||||| ||   || ||||| |||||| ||   ||| |
Sbjct: 101 tactcactccatctcaaaataagtgtctcaactctagtacaactttgtattaaagctagt 42

                                             
Query: 72  acaaagttgagacagttattttgagacggaggga 105
           |||||||||||||| |||||||| ||||||||||
Sbjct: 41  acaaagttgagacacttattttgggacggaggga 8



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 14 ctccctccgtctcaaaataagtgtct 39
          ||||||||||| ||||||||||||||
Sbjct: 7  ctccctccgtcccaaaataagtgtct 32




>RF00906;MIR1122;AJ400714.1/3663-3767 4565:Triticum aestivum (bread
           wheat)
          Length = 105

 Score = 67.9 bits (34), Expect = 3e-11
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                 
Query: 10  tatactccctccgtctcaaaataagtgtcttaagcttactacaattttgtacta 63
           ||||||||||||||| |||||||||||||| || |||| ||||| |||||||||
Sbjct: 103 tatactccctccgtcccaaaataagtgtctcaaccttagtacaactttgtacta 50




>RF00906;MIR1122;AK249748.1/2677-2573 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 70/83 (84%)
 Strand = Plus / Minus

                                                                       
Query: 12  tactccctccgtctcaaaataagtgtcttaagcttactacaattttgtactatctctaat 71
           ||||||||||||| |||||||| |||||||| |||| || || ||| || ||   ||| |
Sbjct: 101 tactccctccgtcgcaaaataaatgtcttaaacttagtataaatttatagtaaagctagt 42

                                  
Query: 72  acaaagttgagacagttattttg 94
           |||||||| ||||||||||||||
Sbjct: 41  acaaagttaagacagttattttg 19




>RF00906;MIR1122;AJ234583.1/157-260 4513:Hordeum vulgare
          Length = 104

 Score = 60.0 bits (30), Expect = 7e-09
 Identities = 79/94 (84%), Gaps = 1/94 (1%)
 Strand = Plus / Minus

                                                                       
Query: 12  tactccctccgtctcaaaataagtgtcttaagcttactacaattttgtactatctctaat 71
           |||||||||||||||||||||| ||||| ||||||| || || |||| ||||   ||| |
Sbjct: 100 tactccctccgtctcaaaataattgtctcaagcttagtataactttgcacta-agctagt 42

                                             
Query: 72  acaaagttgagacagttattttgagacggaggga 105
           | ||| || ||| | |||||||||||||||||||
Sbjct: 41  ataaaattaagaaacttattttgagacggaggga 8



 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 11 atactccctccgtctcaaaataagtgtcttaa 42
          ||||||||||||||||||||||||| ||||||
Sbjct: 4  atactccctccgtctcaaaataagtttcttaa 35



 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 78  ttgagacagttattttgagacggaggga 105
           |||||||| |||||||||||||||||||
Sbjct: 70  ttgagacaattattttgagacggaggga 97




>RF00906;MIR1122;EU282771.1/632-528 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score = 60.0 bits (30), Expect = 7e-09
 Identities = 78/94 (82%)
 Strand = Plus / Plus

                                                                       
Query: 12  tactccctccgtctcaaaataagtgtcttaagcttactacaattttgtactatctctaat 71
           ||||||||||||| |||||||| | ||| || |||| ||||| ||| |||||   ||| |
Sbjct: 5   tactccctccgtcccaaaataactttctcaaacttagtacaactttatactagagctagt 64

                                             
Query: 72  acaaagttgagacagttattttgagacggaggga 105
             |||||||||| | |||||||||||||||||||
Sbjct: 65  gtaaagttgagatacttattttgagacggaggga 98



 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 12  tactccctccgtctcaaaataagt 35
           ||||||||||||||||||||||||
Sbjct: 101 tactccctccgtctcaaaataagt 78




>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
          Length = 112

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 61/72 (84%)
 Strand = Plus / Plus

                                                                       
Query: 34  gtgtcttaagcttactacaattttgtactatctctaatacaaagttgagacagttatttt 93
           ||||||| |||||| ||||| |||||||||    || ||||||||||||||| |||||||
Sbjct: 34  gtgtcttgagcttagtacaactttgtactaaagttagtacaaagttgagacacttatttt 93

                       
Query: 94  gagacggaggga 105
           | || |||||||
Sbjct: 94  gggatggaggga 105




>RF00906;MIR1122;AF488415.1/78603-78755 4568:Triticum monococcum
          Length = 153

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 60/71 (84%)
 Strand = Plus / Plus

                                                                      
Query: 14 ctccctccgtctcaaaataagtgtcttaagcttactacaattttgtactatctctaatac 73
          |||||| |||| |||||||||||||| || |||| ||||| |||| ||||  | || |||
Sbjct: 7  ctcccttcgtcccaaaataagtgtctcaaccttagtacaactttgcactaaatttagtac 66

                     
Query: 74 aaagttgagac 84
          |||||||||||
Sbjct: 67 aaagttgagac 77



 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 71  tacaaagttgagacagttattttgagacggaggga 105
           |||||| ||||||||||||||||| ||||||||||
Sbjct: 112 tacaaacttgagacagttattttgggacggaggga 146



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 9   ttatactccctccgtctcaaaataagtgtct 39
           |||||||||||||||| |||||||| |||||
Sbjct: 152 ttatactccctccgtcccaaaataactgtct 122




>RF00906;MIR1122;EU282251.1/1314-1209 52152:Elymus repens
          Length = 106

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                          
Query: 8   attatactccctccgtctcaaaataagtgtc 38
           ||||||||||||||||| |||||||||||||
Sbjct: 106 attatactccctccgtcccaaaataagtgtc 76



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 12 tactccctccgtctcaaaataagtgtc 38
          ||||||||||||| |||||||||||||
Sbjct: 5  tactccctccgtcccaaaataagtgtc 31




>RF00906;MIR1122;EU282768.1/632-528 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 77/94 (81%)
 Strand = Plus / Plus

                                                                       
Query: 12  tactccctccgtctcaaaataagtgtcttaagcttactacaattttgtactatctctaat 71
           ||||||||||||| |||||||| | ||| || |||| ||||| ||| |||||   ||| |
Sbjct: 5   tactccctccgtcccaaaataactttctcaaacttagtacaactttatactagagctagt 64

                                             
Query: 72  acaaagttgagacagttattttgagacggaggga 105
             |||| ||||| | |||||||||||||||||||
Sbjct: 65  gtaaagctgagatacttattttgagacggaggga 98



 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 12  tactccctccgtctcaaaataagt 35
           ||||||||||||||||||||||||
Sbjct: 101 tactccctccgtctcaaaataagt 78




>RF00906;MIR1122;FJ581044.1/175385-175266 4538:Oryza glaberrima
           (African rice)
          Length = 120

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 10  tatactccctccgtctcaaaataagt 35
           ||||||||||||||||||||||||||
Sbjct: 118 tatactccctccgtctcaaaataagt 93




>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
          Length = 104

 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 8   attatactccctccgtctcaaaataagtg 36
           ||||||||||||||||| |||||||||||
Sbjct: 104 attatactccctccgtcccaaaataagtg 76



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 71  tacaaagttgagacagttattttgagacggaggga 105
           |||||||||||| || |||||||| ||||||||||
Sbjct: 63  tacaaagttgagtcacttattttgggacggaggga 97




>RF00906;MIR1122;AK249769.1/2180-2285 112509:Hordeum vulgare
          subsp. vulgare (domesticated barley)
          Length = 106

 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 10 tatactccctccgtctcaaaataagtgtc 38
          |||||||||||||||| ||||||||||||
Sbjct: 3  tatactccctccgtcttaaaataagtgtc 31




>RF01058;MIR806;AAAA02021561.1/35714-35484 39946:Oryza sativa
          Indica Group
          Length = 231

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 11 atactccctccgtctcaaaataag 34
          ||||||||||||||||||||||||
Sbjct: 1  atactccctccgtctcaaaataag 24




>RF00906;MIR1122;AB183299.1/312-404 4565:Triticum aestivum (bread
           wheat)
          Length = 93

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 74  aaagttgagacagttattttgagacggaggga 105
           |||||||||||| |||||||| ||||||||||
Sbjct: 39  aaagttgagacacttattttgggacggaggga 8



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 14 ctccctccgtctcaaaataagtgtct 39
          ||||||||||| ||||||||||||||
Sbjct: 7  ctccctccgtcccaaaataagtgtct 32



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                        
Query: 10 tatactccctccgtctcaaaataagtgtct 39
          |||||| |||||||| ||||||||||||||
Sbjct: 91 tatacttcctccgtcccaaaataagtgtct 62




>RF00906;MIR1122;FJ491378.1/4581-4466 4550:Secale cereale (rye)
          Length = 116

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 9   ttatactccctccgtctcaaaataagtg 36
           |||||||||||||||| |||||||||||
Sbjct: 115 ttatactccctccgtcccaaaataagtg 88




>RF00906;MIR1122;EU282770.1/593-711 112509:Hordeum vulgare subsp.
          vulgare (domesticated barley)
          Length = 119

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 12 tactccctccgtctcaaaataagtgtct 39
          ||||||||||||||||||||| ||||||
Sbjct: 5  tactccctccgtctcaaaataggtgtct 32



 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 74  aaagttgagacagttattttgagacggaggga 105
           ||||||||||||  ||||||||||||||||||
Sbjct: 39  aaagttgagacacctattttgagacggaggga 8




>RF00906;MIR1122;AK250735.1/291-376 112509:Hordeum vulgare subsp.
          vulgare (domesticated barley)
          Length = 86

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 12 tactccctccgtctcaaaataagtgtct 39
          ||||||||||||| ||||||||||||||
Sbjct: 5  tactccctccgtcccaaaataagtgtct 32




>RF00906;MIR1122;AAAA02019740.1/10862-10702 39946:Oryza sativa
           Indica Group
          Length = 161

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 9   ttatactccctccgtctcaaaata 32
           ||||||||||||||||||||||||
Sbjct: 160 ttatactccctccgtctcaaaata 137




>RF00906;MIR1122;U29095.1/333-439 4565:Triticum aestivum (bread
          wheat)
          Length = 107

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 10 tatactccctccgtctcaaaataagtg 36
          ||||||||||||||| |||||||||||
Sbjct: 3  tatactccctccgtcccaaaataagtg 29




>RF00906;MIR1122;DQ267106.1/62901-62968 4572:Triticum urartu
          Length = 68

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 10 tatactccctccgtctcaaaataagtg 36
          ||||||||||||||| |||||||||||
Sbjct: 3  tatactccctccgtcccaaaataagtg 29




>RF00906;MIR1122;AK252095.1/1820-1925 112509:Hordeum vulgare
          subsp. vulgare (domesticated barley)
          Length = 106

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 12 tactccctccgtctcaaaataagtgtc 38
          |||||||||||| ||||||||||||||
Sbjct: 5  tactccctccgtatcaaaataagtgtc 31




>RF00906;MIR1122;AF427791.1/40179-40064 4513:Hordeum vulgare
          Length = 116

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 10 tatactccctccgtctcaaaataagtg 36
          ||||||| |||||||||||||||||||
Sbjct: 3  tatactctctccgtctcaaaataagtg 29




>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
          Length = 132

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 71  tacaaagttgagacagttattttgagacggaggga 105
           |||||||||||| || |||||||| ||||||||||
Sbjct: 42  tacaaagttgagtcacttattttgggacggaggga 8



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 11 atactccctccgtctcaaaataagtg 36
          |||||||||||||| |||||||||||
Sbjct: 4  atactccctccgtcccaaaataagtg 29




>RF00906;MIR1122;AAAA02022195.1/27114-27226 39946:Oryza sativa
          Indica Group
          Length = 113

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 11 atactccctccgtctcaaaataa 33
          |||||||||||||||||||||||
Sbjct: 4  atactccctccgtctcaaaataa 26




>RF00906;MIR1122;AAAA02000585.1/2941-3070 39946:Oryza sativa Indica
           Group
          Length = 130

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 10  tatactccctccgtctcaaaata 32
           |||||||||||||||||||||||
Sbjct: 128 tatactccctccgtctcaaaata 106




>RF01058;MIR806;AP008208.1/6823788-6823544 39947:Oryza sativa
           Japonica Group
          Length = 245

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 11  atactccctccgtctcaaaataagtg 36
           |||||||||||||| |||||||||||
Sbjct: 245 atactccctccgtcccaaaataagtg 220




>RF01058;MIR806;AL731615.4/103346-103100 39947:Oryza sativa
          Japonica Group
          Length = 247

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 12 tactccctccgtctcaaaataagtgt 37
          ||||||||||||| ||||||||||||
Sbjct: 2  tactccctccgtcccaaaataagtgt 27




>RF01058;MIR806;AACV01025022.1/35011-35254 39947:Oryza sativa
          Japonica Group
          Length = 244

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 11 atactccctccgtctcaaaataagtg 36
          |||||||||||||| |||||||||||
Sbjct: 1  atactccctccgtcccaaaataagtg 26




>RF01058;MIR806;AAAA02004537.1/25464-25706 39946:Oryza sativa
          Indica Group
          Length = 243

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 11 atactccctccgtctcaaaataagtg 36
          |||||||||||||| |||||||||||
Sbjct: 1  atactccctccgtcccaaaataagtg 26




>RF01058;MIR806;AAAA02009876.1/3121-2881 39946:Oryza sativa Indica
           Group
          Length = 241

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 11  atactccctccgtctcaaaataagtg 36
           |||||||||||||| |||||||||||
Sbjct: 241 atactccctccgtcccaaaataagtg 216




>RF00906;MIR1122;AC174352.7/5727-5571 3880:Medicago truncatula
           (barrel medic)
          Length = 157

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 11  atactccctccgtctcaaaata 32
           ||||||||||||||||||||||
Sbjct: 154 atactccctccgtctcaaaata 133




>RF00906;MIR1122;D30809.1/4836-4921 4565:Triticum aestivum (bread
          wheat)
          Length = 86

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                        
Query: 9  ttatactccctccgtctcaaaataagtgtc 38
          |||||||||| ||||| |||||||||||||
Sbjct: 85 ttatactcccaccgtcccaaaataagtgtc 56




>RF00906;MIR1122;AP008214.1/14410723-14410632 39947:Oryza sativa
          Japonica Group
          Length = 92

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 11 atactccctccgtctcaaaataagtg 36
          |||||||||||||| |||||||||||
Sbjct: 4  atactccctccgtcccaaaataagtg 29




>RF00906;MIR1122;AC130607.2/121928-122037 39947:Oryza sativa
          Japonica Group
          Length = 110

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 10 tatactccctccgtctcaaaat 31
          ||||||||||||||||||||||
Sbjct: 3  tatactccctccgtctcaaaat 24




>RF00906;MIR1122;AAAA02026943.1/18413-18317 39946:Oryza sativa
          Indica Group
          Length = 97

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 12 tactccctccgtctcaaaataa 33
          ||||||||||||||||||||||
Sbjct: 93 tactccctccgtctcaaaataa 72