miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU282251.1/1314-1209 52152:Elymus repens
Length = 106
Score = 87.7 bits (44), Expect = 3e-17
Identities = 86/99 (86%), Gaps = 2/99 (2%)
Strand = Plus / Plus
Query: 10 tactccctccgttctaaaataagtgacacaaatttagtactaagttaatacaaatataac 69
|||||||||||| | |||||||||| | ||||||||||||||||||| |||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtcgcaaatttagtactaagttagtacaaatataat 64
Query: 70 actaaa--aacaacacttatattgggacggatggagtat 106
|||| | | | |||||||| |||||||||| |||||||
Sbjct: 65 actagagcagcgacacttattttgggacggagggagtat 103
>RF00906;MIR1122;AK249769.1/2180-2285 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 106
Score = 63.9 bits (32), Expect = 4e-10
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 9 atactccctccgttctaaaataagtgacacaaatttagtactaagtta 56
||||||||||||| ||||||||||| ||||||||||||| |||||||
Sbjct: 4 atactccctccgtcttaaaataagtgtcacaaatttagtattaagtta 51
>RF00906;MIR1122;AACV01007827.1/8284-8145 39947:Oryza sativa
Japonica Group
Length = 140
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 7 aaatactccctccgttctaaaataa 31
|||||||||||||||||||||||||
Sbjct: 2 aaatactccctccgttctaaaataa 26
>RF00906;MIR1122;DQ900687.1/24296-24401 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 106
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 7 aaatactccctccgttctaaaataagtg 34
||||||||||||||| ||||||||||||
Sbjct: 105 aaatactccctccgtcctaaaataagtg 78
>RF00906;MIR1122;DQ445236.1/13423-13319 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 9 atactccctccgttctaaaataagtgacacaaattt 44
||||||||||||||| |||||||||| | |||||||
Sbjct: 4 atactccctccgttccaaaataagtgtctcaaattt 39
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 6 taaatactccctccgttctaaaataa 31
|||||||||||||||||| |||||||
Sbjct: 105 taaatactccctccgttccaaaataa 80
>RF00906;MIR1122;AB182945.1/6773-6906 4565:Triticum aestivum (bread
wheat)
Length = 134
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 8 aatactccctccgttctaaaataagtg 34
|||||||||||||||| ||||||||||
Sbjct: 132 aatactccctccgttccaaaataagtg 106
>RF00906;MIR1122;AK249560.1/988-1092 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 80 acacttatattgggacggatggagtat 106
|||||||| ||||||||||||||||||
Sbjct: 30 acacttattttgggacggatggagtat 4
>RF01058;MIR806;AAAA02002634.1/48844-49087 39946:Oryza sativa Indica
Group
Length = 244
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 81 cacttatattgggacggatggagtat 106
||||||| ||||||||||||||||||
Sbjct: 26 cacttattttgggacggatggagtat 1
>RF00906;MIR1122;AY663392.1/117099-117203 4565:Triticum aestivum
(bread wheat)
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 atactccctccgttctaaaataagtg 34
||||||| ||||||||||||||||||
Sbjct: 4 atactccttccgttctaaaataagtg 29
>RF00906;MIR1122;AY133251.1/901-1005 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 atactccctccgttctaaaataagtg 34
||||||||||||||| ||||||||||
Sbjct: 4 atactccctccgttccaaaataagtg 29
>RF00906;MIR1122;AAAA02003301.1/35949-35819 39946:Oryza sativa
Indica Group
Length = 131
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 atactccctccgttctaaaata 30
||||||||||||||||||||||
Sbjct: 4 atactccctccgttctaaaata 25
>RF00906;MIR1122;AP005399.3/486-590 39947:Oryza sativa Japonica
Group
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 atactccctccgttctaaaata 30
||||||||||||||||||||||
Sbjct: 4 atactccctccgttctaaaata 25
>RF00906;MIR1122;AP005676.3/140751-140855 39947:Oryza sativa
Japonica Group
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 atactccctccgttctaaaata 30
||||||||||||||||||||||
Sbjct: 4 atactccctccgttctaaaata 25
>RF00906;MIR1122;AL713909.5/104301-104440 4530:Oryza sativa (rice)
Length = 140
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 9 atactccctccgttctaaaata 30
||||||||||||||||||||||
Sbjct: 137 atactccctccgttctaaaata 116
