miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|P16180|RR17_ARATH 30S ribosomal protein S17, chloroplastic
OS=Arabidopsis thaliana GN=RPS17 PE=2 SV=1
Length = 149
Score = 63.2 bits (152), Expect = 5e-10
Identities = 28/37 (75%), Positives = 35/37 (94%)
Frame = +2
Query: 119 PSFLPPIRAMRSMRGRVVCSTNDKTVAVEVVRLAPHP 229
P+ +P IRAM++M+GRVVC+T+DKTVAVEVVRLAPHP
Sbjct: 41 PALVPVIRAMKTMQGRVVCATSDKTVAVEVVRLAPHP 77
>sp|P82137|RR17_SPIOL 30S ribosomal protein S17, chloroplastic
(Fragment) OS=Spinacia oleracea GN=RPS17 PE=1 SV=1
Length = 34
Score = 53.1 bits (126), Expect = 5e-07
Identities = 23/28 (82%), Positives = 27/28 (96%)
Frame = +2
Query: 146 MRSMRGRVVCSTNDKTVAVEVVRLAPHP 229
MRSM+G+V+C+TNDKTV VEVVRLAPHP
Sbjct: 1 MRSMQGKVICATNDKTVNVEVVRLAPHP 28
>sp|P17092|RR17_PEA 30S ribosomal protein S17, chloroplastic
(Fragment) OS=Pisum sativum GN=RPS17 PE=2 SV=1
Length = 134
Score = 52.0 bits (123), Expect = 1e-06
Identities = 22/33 (66%), Positives = 29/33 (87%)
Frame = +2
Query: 131 PPIRAMRSMRGRVVCSTNDKTVAVEVVRLAPHP 229
P I+AM++M G+VVC++ +KTVAVEV RLAPHP
Sbjct: 33 PAIKAMKTMEGKVVCASGNKTVAVEVTRLAPHP 65
>sp|Q9TJN6|RR17_MAIZE 30S ribosomal protein S17, chloroplastic
OS=Zea mays GN=RPS17 PE=2 SV=1
Length = 132
Score = 43.5 bits (101), Expect = 4e-04
Identities = 21/31 (67%), Positives = 23/31 (74%)
Frame = +2
Query: 137 IRAMRSMRGRVVCSTNDKTVAVEVVRLAPHP 229
I A R + GRVV + DKTV VEVVRLAPHP
Sbjct: 29 IEAARQLTGRVVTTKADKTVGVEVVRLAPHP 59
>sp|Q9ZST1|RR17_ORYSJ 30S ribosomal protein S17, chloroplastic
OS=Oryza sativa subsp. japonica GN=RPS17 PE=2 SV=1
Length = 145
Score = 42.7 bits (99), Expect = 7e-04
Identities = 20/31 (64%), Positives = 24/31 (77%)
Frame = +2
Query: 137 IRAMRSMRGRVVCSTNDKTVAVEVVRLAPHP 229
I+A + + GRVV + DKTV VEVVRLAPHP
Sbjct: 34 IQAAKQLTGRVVTTKADKTVGVEVVRLAPHP 64
