miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;AASG02005785.1/15088-15180 3988:Ricinus communis
(castor bean)
Length = 93
Score = 123 bits (62), Expect = 4e-28
Identities = 80/86 (93%)
Strand = Plus / Plus
Query: 3 cactatcagttgaagctgccagcatgatcttaaccttcctccatagttgaggaaagatca 62
|||||||||||||||||||||||||||||| || |||||||| | |||||||| ||||||
Sbjct: 4 cactatcagttgaagctgccagcatgatctaaatcttcctccctcgttgaggagagatca 63
Query: 63 gatcatgtggcagcttcacccgttgt 88
||||||||||||| ||||||||||||
Sbjct: 64 gatcatgtggcagtttcacccgttgt 89
>RF00640;MIR167_1;AARH01004314.1/38692-38599 3694:Populus
trichocarpa
Length = 94
Score = 105 bits (53), Expect = 1e-22
Identities = 78/85 (91%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 5 ctatcagttgaagctgccagcatgatcttaaccttcctccatagttgaggaaag-atcag 63
|||||||||||||||||||||||||||||| ||||||||| | ||||||||||| | |||
Sbjct: 6 ctatcagttgaagctgccagcatgatcttagccttcctcctttgttgaggaaagaaacag 65
Query: 64 atcatgtggcagcttcacccgttgt 88
|||||||||||| |||||| |||||
Sbjct: 66 atcatgtggcagtttcacctgttgt 90
>RF00640;MIR167_1;BABK01022869.1/1081-990 34305:Lotus japonicus
Length = 92
Score = 95.6 bits (48), Expect = 9e-20
Identities = 73/80 (91%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 3 cactatcagttgaagctgccagcatgatcttaaccttcctccatagttgaggaaagatca 62
||||| |||||||||||||||||||||||||||| | ||||||| | || ||||||||||
Sbjct: 4 cactaccagttgaagctgccagcatgatcttaacttccctccat-ggtggggaaagatca 62
Query: 63 gatcatgtggcagcttcacc 82
||||||||||||| ||||||
Sbjct: 63 gatcatgtggcagtttcacc 82
>RF00640;MIR167_1;CAAP02000793.1/41456-41548 29760:Vitis vinifera
Length = 93
Score = 67.9 bits (34), Expect = 2e-11
Identities = 73/86 (84%)
Strand = Plus / Plus
Query: 3 cactatcagttgaagctgccagcatgatcttaaccttcctccatagttgaggaaagatca 62
|||||||||||||||||||||||||||||| ||| | | ||| | ||| | ||||||
Sbjct: 4 cactatcagttgaagctgccagcatgatctaaacttgcttccctttgtgaacagagatca 63
Query: 63 gatcatgtggcagcttcacccgttgt 88
||||||||||||| |||||| |||||
Sbjct: 64 gatcatgtggcagtttcacctgttgt 89
>RF00640;MIR167_1;AC225328.1/13792-13888 4081:Solanum lycopersicum
Length = 97
Score = 58.0 bits (29), Expect = 2e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 51 gaggaaagatcagatcatgtggcagcttcacccgttg 87
|||||||||||||||||||||||||| ||||| ||||
Sbjct: 56 gaggaaagatcagatcatgtggcagcatcacctgttg 92
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 3 cactatcagttgaagctgccagcatgatct 32
||||| ||||||||||||||||||||||||
Sbjct: 4 cactagcagttgaagctgccagcatgatct 33
>RF00640;MIR167_1;ABIM01011014.1/4156-4251 3649:Carica papaya
(papaya)
Length = 96
Score = 56.0 bits (28), Expect = 8e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 7 atcagttgaagctgccagcatgatcttaacct 38
||||| ||||||||||||||||||||||||||
Sbjct: 8 atcagatgaagctgccagcatgatcttaacct 39
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 56 aagatcagatcatgtggcagcttcacccgttg 87
||||||||||||| |||||| |||||||||||
Sbjct: 60 aagatcagatcatatggcagtttcacccgttg 91
>RF00640;MIR167_1;AC209507.1/126147-126250 4081:Solanum
lycopersicum
Length = 104
Score = 56.0 bits (28), Expect = 8e-08
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 3 cactatcagttgaagctgccagcatgatcttaaccttcct 42
||||| |||||||||||||||||||||||| ||| |||||
Sbjct: 4 cactagcagttgaagctgccagcatgatctaaactttcct 43
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 51 gaggaaagatcagatcatgtggcagc 76
||||||||||||||||||||||||||
Sbjct: 63 gaggaaagatcagatcatgtggcagc 88
>RF00640;MIR167_1;CAAP02000379.1/24621-24714 29760:Vitis vinifera
Length = 94
Score = 56.0 bits (28), Expect = 8e-08
Identities = 68/80 (85%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 9 cagttgaagctgccagcatgatcttaaccttcctcca-tagttgaggaaagatcagatca 67
|||||||||||||||||||||||| ||| | ||| | ||| ||||||||||||||||
Sbjct: 10 cagttgaagctgccagcatgatctcaacttccctatacaagtcaaggaaagatcagatca 69
Query: 68 tgtggcagcttcacccgttg 87
||||| ||| ||||| ||||
Sbjct: 70 tgtggtagcctcacctgttg 89
>RF00640;MIR167_1;ABIM01012099.1/6617-6710 3649:Carica papaya
(papaya)
Length = 94
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 9 cagttgaagctgccagcatgatcttaaccttcct 42
|||||||||||||||||||||||| ||| |||||
Sbjct: 10 cagttgaagctgccagcatgatctaaactttcct 43
>RF00640;MIR167_1;AARH01002853.1/45908-46003 3694:Populus
trichocarpa
Length = 96
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 3 cactatcagttgaagctgccagcatgatct 32
||||| ||||||||||||||||||||||||
Sbjct: 4 cactagcagttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AARH01001059.1/157614-157519 3694:Populus
trichocarpa
Length = 96
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 3 cactatcagttgaagctgccagcatgatct 32
||||| ||||||||||||||||||||||||
Sbjct: 4 cactagcagttgaagctgccagcatgatct 33
>RF00640;MIR167_1;EU532400.1/147-239 3634:Gossypium barbadense
(sea-island cotton)
Length = 93
Score = 50.1 bits (25), Expect = 5e-06
Identities = 69/81 (85%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 9 cagttgaagctgccagcatgatcttaaccttcctccatagttga-ggaaagatcagatca 67
||||||||||||||||||||||| ||| |||||| | ||||| ||| |||| |||||
Sbjct: 10 cagttgaagctgccagcatgatc-taaacttccttctctgttgagggatagatgggatca 68
Query: 68 tgtggcagcttcacccgttgt 88
||||| ||||||||| |||||
Sbjct: 69 tgtggtagcttcacctgttgt 89
>RF00640;MIR167_1;AARH01008931.1/3492-3395 3694:Populus
trichocarpa
Length = 98
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 10 agttgaagctgccagcatgatcttaaccttcct 42
||||||||||||||||||||||| ||| |||||
Sbjct: 11 agttgaagctgccagcatgatctgaactttcct 43
>RF00640;MIR167_1;ABIM01018604.1/478-580 3649:Carica papaya
(papaya)
Length = 103
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 cagttgaagctgccagcatgatct 32
||||||||||||||||||||||||
Sbjct: 10 cagttgaagctgccagcatgatct 33
>RF00640;MIR167_1;CAAP02001791.1/44208-44309 29760:Vitis vinifera
Length = 102
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 cagttgaagctgccagcatgatct 32
||||||||||||||||||||||||
Sbjct: 10 cagttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AASG02001065.1/6152-6064 3988:Ricinus communis
(castor bean)
Length = 89
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 agttgaagctgccagcatgatct 32
|||||||||||||||||||||||
Sbjct: 11 agttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AARH01012195.1/26948-26514 3694:Populus
trichocarpa
Length = 435
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 gttgaagctgccagcatgatct 32
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AC212802.1/77650-78085 3694:Populus trichocarpa
Length = 436
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 gttgaagctgccagcatgatct 32
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AASG02013390.1/4624-4525 3988:Ricinus communis
(castor bean)
Length = 100
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 3 cactatcagttgaagctgccagcatgatct 32
||||| ||||| ||||||||||||||||||
Sbjct: 4 cactagcagttaaagctgccagcatgatct 33
>RF00640;MIR167_1;BABK01002345.1/2496-2649 34305:Lotus japonicus
Length = 154
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 gttgaagctgccagcatgatct 32
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;CAAP02000801.1/49293-49646 29760:Vitis vinifera
Length = 354
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 gttgaagctgccagcatgatct 32
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;ABXC01002438.1/140052-139788 4558:Sorghum
bicolor (sorghum)
Length = 265
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 gttgaagctgccagcatgatct 32
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;ABXC01006864.1/41201-41318 4558:Sorghum bicolor
(sorghum)
Length = 118
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 gttgaagctgccagcatgatct 32
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
