miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;AASG02007590.1/3624-3708 3988:Ricinus communis
(castor bean)
Length = 85
Score = 75.8 bits (38), Expect = 1e-13
Identities = 75/86 (87%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 11 ttgacagaagagagagagcacaacccgagaaatggtcaaagaatcttttacctttgttgg 70
||||||||||||||||||||||||||| | || ||||| ||||| ||||||||||
Sbjct: 1 ttgacagaagagagagagcacaacccggcattaggctaaagagtctttg-cctttgttgg 59
Query: 71 gagtgtgctctctactcttctgtcat 96
||||||||||||| ||||||||||||
Sbjct: 60 gagtgtgctctctcctcttctgtcat 85
>RF00073;mir-156;AP008215.1/18234552-18234465 39947:Oryza sativa
Japonica Group
Length = 88
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagagagagagcacaacccg 37
||||||||||||||||||||||||||
Sbjct: 2 tgacagaagagagagagcacaacccg 27
>RF00073;mir-156;ABXC01001444.1/103334-103247 4558:Sorghum bicolor
(sorghum)
Length = 88
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagagagagagcacaaccc 36
|||||||||||||||||||||||||
Sbjct: 2 tgacagaagagagagagcacaaccc 26
